Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 2.4e-60 235.3 119 100.0
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 2.4e-60 235.3 119 100.0
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 6.8e-60 233.8 119 99.2
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 6.8e-60 233.8 119 99.2
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 6.8e-60 233.8 119 99.2
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 3.3e-46 188.3 107 92.5
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 5.3e-36 154.5 112 72.3
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.7e-26 122.9 86 72.1
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 1.9e-25 119.4 78 73.1
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 1.2e-24 116.7 92 65.2
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 3.1e-20 102.1 95 63.2
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 4.5e-19 98.2 73 69.9
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 1.3e-18 96.7 73 68.5
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 2.9e-18 95.5 80 63.8
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 3.8e-18 95.1 73 68.5
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 3.8e-18 95.1 73 68.5
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 5.0e-18 94.7 73 67.1
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 1.1e-17 93.6 73 65.8
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 1.9e-17 92.8 65 72.3
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 2.5e-17 92.4 78 60.3
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 6.1e-16 87.8 79 57.0
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 6.1e-16 87.8 56 75.0
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 3.9e-15 85.1 77 57.1
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 5.1e-15 84.7 66 66.7
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 5.1e-15 84.7 66 66.7
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 5.1e-15 84.7 66 66.7
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 6.7e-15 84.3 84 56.0
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 8.8e-15 84.0 79 53.2
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 1.1e-14 83.6 96 49.0
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 1.5e-14 83.2 104 45.2
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 2.0e-14 82.8 71 60.6
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 2.5e-14 82.4 48 79.2
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 4.3e-14 81.6 76 55.3
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 4.3e-14 81.6 71 57.7
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 5.7e-14 81.3 70 58.6
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 7.4e-14 80.9 101 46.5
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 9.7e-14 80.5 56 66.1
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 9.7e-14 80.5 84 53.6
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 1.3e-13 80.1 48 75.0
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 1.3e-13 80.1 83 50.6
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 1.7e-13 79.7 85 49.4
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 1.7e-13 79.7 73 54.8
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 2.2e-13 79.3 57 66.7
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 2.8e-13 79.0 89 52.8
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 2.8e-13 79.0 96 49.0
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 2.8e-13 79.0 72 56.9
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 4.8e-13 78.2 85 50.6
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 4.8e-13 78.2 70 60.0
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 6.3e-13 77.8 91 50.5
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 6.3e-13 77.8 126 39.7
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 8.2e-13 77.4 57 63.2
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 8.2e-13 77.4 72 56.9
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 1.4e-12 76.6 42 83.3
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 1.8e-12 76.3 80 51.2
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 3.1e-12 75.5 64 60.9
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 4.1e-12 75.1 45 75.6
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 4.1e-12 75.1 45 75.6
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 5.3e-12 74.7 65 61.5
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 5.3e-12 74.7 76 55.3
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 9.1e-12 73.9 60 66.7
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 9.1e-12 73.9 94 42.6
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 1.2e-11 73.6 70 52.9
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 1.5e-11 73.2 91 47.3
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 1.5e-11 73.2 73 50.7
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 1.5e-11 73.2 75 49.3
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 2.0e-11 72.8 96 44.8
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 4.5e-11 71.6 69 52.2
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 4.5e-11 71.6 62 56.5
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 7.7e-11 70.9 66 53.0
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 7.7e-11 70.9 62 56.5
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 7.7e-11 70.9 66 57.6
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.0e-10 70.5 50 66.0
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 1.3e-10 70.1 84 51.2
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 1.3e-10 70.1 49 65.3
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 1.7e-10 69.7 95 41.1
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 1.7e-10 69.7 59 61.0
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 1.7e-10 69.7 73 54.8
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 2.2e-10 69.3 69 50.7
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 2.9e-10 68.9 53 66.0
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 3.8e-10 68.6 50 66.0
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 3.8e-10 68.6 65 56.9
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 5.0e-10 68.2 69 52.2
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 6.5e-10 67.8 73 53.4
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 8.5e-10 67.4 66 56.1
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 8.5e-10 67.4 77 50.6
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 8.5e-10 67.4 77 50.6
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 1.1e-09 67.0 78 51.3
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 1.1e-09 67.0 45 68.9
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 1.1e-09 67.0 68 57.4
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 1.4e-09 66.6 61 60.7
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 1.9e-09 66.2 40 77.5
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.9e-09 66.2 78 51.3
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 2.5e-09 65.9 81 49.4
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.2e-09 65.5 78 50.0
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 4.2e-09 65.1 65 55.4
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 4.2e-09 65.1 45 66.7
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 5.5e-09 64.7 86 46.5
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 9.4e-09 63.9 78 47.4
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 9.4e-09 63.9 50 62.0
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.6e-08 63.2 83 45.8
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 7.9e-08 60.8 78 46.2
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 1.8e-07 59.7 44 65.9
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 1.8e-07 59.7 44 65.9
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 6.7e-07 57.8 60 56.7
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 8.8e-07 57.4 59 52.5
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 8.8e-07 57.4 97 43.3
unitig_22.g5530 Utricularia gibba HOM05D007247 ORTHO05D009208 1.5e-06 56.6 69 44.9
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 2.0e-06 56.2 41 70.7
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 2.0e-06 56.2 59 52.5
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 2.6e-06 55.8 50 56.0
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 2.6e-06 55.8 59 54.2
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 3.3e-06 55.5 56 55.4
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 3.3e-06 55.5 60 46.7
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 3.3e-06 55.5 63 49.2
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 3.3e-06 55.5 100 34.0
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 4.4e-06 55.1 112 37.5
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 4.4e-06 55.1 102 37.3
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 5.7e-06 54.7 111 37.8
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 9.7e-06 53.9 72 38.9
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 9.7e-06 53.9 48 60.4
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 9.7e-06 53.9 100 37.0


User provided reference genes

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