Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 1.8e-187 659.1 331 100.0
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 1.9e-139 499.6 270 95.2
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 2.4e-110 402.9 218 95.0
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 5.8e-109 398.3 261 82.8
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 2.2e-92 343.2 197 92.4
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 2.5e-91 339.7 213 82.6
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 3.2e-91 339.3 170 100.0
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 7.2e-83 311.6 230 75.2
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 4.4e-80 302.4 216 75.5
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 9.1e-78 294.7 213 73.2
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 1.6e-77 293.9 213 73.7
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 4.5e-77 292.4 213 72.8
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 9.7e-72 274.6 214 66.8
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 6.3e-55 218.8 218 57.8
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 5.9e-53 212.2 217 55.3
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 6.1e-50 202.2 215 54.0
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 1.4e-49 201.1 213 56.3
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 1.8e-49 200.7 212 52.8
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 5.7e-48 195.7 220 52.3
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 1.3e-47 194.5 211 54.5
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 1.7e-47 194.1 221 50.7
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 1.7e-47 194.1 214 54.2
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 2.2e-47 193.7 228 52.2
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 1.4e-46 191.0 223 49.3
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 1.4e-46 191.0 215 55.3
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 1.8e-46 190.7 215 50.2
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 5.4e-46 189.1 213 52.1
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 9.2e-46 188.3 230 51.3
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 9.2e-46 188.3 228 50.0
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 1.2e-45 188.0 213 52.1
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 1.2e-45 188.0 213 52.1
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 1.6e-45 187.6 212 49.1
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 1.6e-45 187.6 219 48.4
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 2.0e-45 187.2 213 52.1
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 3.5e-45 186.4 225 49.8
BraA07t30840Z Brassica rapa HOM05D006456 ORTHO05D007588 4.6e-45 186.0 90 100.0
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 5.9e-45 185.7 213 50.7
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 1.3e-44 184.5 217 47.9
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 2.3e-44 183.7 230 50.9
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 3.0e-44 183.3 216 49.1
BolC6t38885H Brassica oleracea HOM05D006456 ORTHO05D007588 3.9e-44 183.0 96 92.7
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 6.6e-44 182.2 218 49.1
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 1.1e-43 181.4 232 47.0
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 1.1e-43 181.4 221 48.4
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 3.3e-43 179.9 227 48.0
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 4.3e-43 179.5 227 45.8
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 5.6e-43 179.1 218 47.7
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 7.3e-43 178.7 218 52.8
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 7.3e-43 178.7 213 51.2
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 1.2e-42 177.9 214 49.1
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 1.2e-42 177.9 223 49.8
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 1.6e-42 177.6 227 45.8
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 1.6e-42 177.6 214 47.7
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 3.6e-42 176.4 227 44.9
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 8.0e-42 175.3 222 48.2
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.0e-41 174.9 220 49.1
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 1.0e-41 174.9 218 46.8
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 1.4e-41 174.5 227 47.1
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.8e-41 174.1 221 48.9
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 2.3e-41 173.7 221 48.9
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 3.1e-41 173.3 218 49.5
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 3.1e-41 173.3 225 49.3
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 5.2e-41 172.6 227 47.1
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 6.8e-41 172.2 217 48.4
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 1.2e-40 171.4 217 47.9
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 1.5e-40 171.0 226 48.2
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 4.4e-40 169.5 223 48.9
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 3.7e-39 166.4 219 47.0
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 3.7e-39 166.4 226 43.8
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 3.7e-39 166.4 216 44.9
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 6.4e-39 165.6 214 48.6
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 6.4e-39 165.6 232 44.8
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 4.1e-38 162.9 217 48.4
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 2.7e-37 160.2 224 45.5
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 2.7e-37 160.2 223 43.5
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 3.5e-37 159.8 217 47.0
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 4.6e-37 159.5 177 48.0
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 4.6e-37 159.5 264 40.2
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 1.7e-36 157.5 220 43.2
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 2.3e-36 157.1 230 43.0
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 1.9e-35 154.1 197 47.2
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 7.3e-35 152.1 215 46.5
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 9.5e-35 151.8 209 43.1
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 6.2e-34 149.1 219 46.1
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 6.2e-34 149.1 220 42.3
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 1.8e-33 147.5 233 43.8
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 4.0e-33 146.4 173 49.1
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 9.8e-32 141.7 226 41.6
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 1.7e-31 141.0 225 41.8
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 1.7e-31 141.0 219 43.8
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 2.9e-31 140.2 227 40.1
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 8.3e-31 138.7 214 41.6
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 1.1e-30 138.3 218 40.8
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 5.4e-30 136.0 216 38.9
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 1.2e-29 134.8 159 49.1
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 2.7e-29 133.7 214 44.4
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 7.8e-29 132.1 226 39.8
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 1.2e-26 124.8 218 37.6
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 1.6e-26 124.4 220 37.7
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 2.8e-26 123.6 136 47.8
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 6.2e-26 122.5 125 52.8
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 3.1e-25 120.2 225 37.3
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 3.1e-25 120.2 229 37.1
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 5.2e-25 119.4 221 37.6
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 5.2e-25 119.4 227 36.6
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 1.5e-24 117.9 175 45.1
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 1.7e-23 114.4 228 33.8
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 5.4e-22 109.4 315 33.0
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 8.6e-20 102.1 136 43.4
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 6.4e-15 85.9 240 29.6
Pp3c2_12120 Physcomitrium patens HOM05D006456 ORTHO05D007588 1.3e-12 78.2 228 28.1
C04p24790 Brassica napus HOM05D011583 ORTHO05D041434 3.9e-12 76.6 72 65.3
BolC4t23983H Brassica oleracea HOM05D011583 ORTHO05D041434 3.9e-12 76.6 72 65.3
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 1.9e-11 74.3 238 28.6
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 4.3e-11 73.2 50 66.0
CDE06G0604 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 3.6e-10 70.1 109 43.1
A08p10170 Brassica napus HOM05D011583 ORTHO05D017584 1.5e-08 64.7 68 57.4
A09p42480 Brassica napus HOM05D011583 ORTHO05D017584 1.5e-08 64.7 68 57.4
BraA08t33016Z Brassica rapa HOM05D011583 ORTHO05D017584 1.5e-08 64.7 68 57.4
BraA09t39725Z Brassica rapa HOM05D011583 ORTHO05D017584 1.5e-08 64.7 68 57.4
Actinidia31998 Actinidia chinensis HOM05D006456 ORTHO05D007588 2.6e-08 63.9 93 46.2
BcaB06g26972 Brassica carinata HOM05D006456 ORTHO05D007588 2.6e-08 63.9 45 71.1
BcaB03g16564 Brassica carinata HOM05D011583 ORTHO05D007588 3.4e-08 63.5 44 75.0
BcaC01g03290 Brassica carinata HOM05D011583 ORTHO05D017584 7.6e-08 62.4 62 59.7
BolC3t17677H Brassica oleracea HOM05D011583 ORTHO05D017584 7.6e-08 62.4 62 59.7
SEGI_26799 Sequoiadendron giganteum HOM05D006456 ORTHO05D007588 9.9e-08 62.0 101 34.7
SHI16262 Sapria himalayana HOM05D006456 ORTHO05D007588 1.3e-07 61.6 230 30.0
BcaC07g37557 Brassica carinata HOM05D011583 ORTHO05D007588 2.9e-07 60.5 38 84.2
BcaB07g33544 Brassica carinata HOM05D011583 ORTHO05D007588 4.9e-07 59.7 45 68.9
BcaC03g13732 Brassica carinata HOM05D011583 ORTHO05D017584 6.4e-07 59.3 62 58.1
BcaC03g13733 Brassica carinata HOM05D011583 ORTHO05D017584 6.4e-07 59.3 62 58.1
BolC2t07015H Brassica oleracea HOM05D011583 ORTHO05D017584 6.4e-07 59.3 62 58.1
SHI16259 Sapria himalayana HOM05D006456 ORTHO05D007588 1.9e-06 57.8 49 57.1
MCO07G657 Micromonas commoda HOM05D000984 ORTHO05D001096 4.2e-06 56.6 68 38.2
Cre16.g675749 Chlamydomonas reinhardtii HOM05D000984 ORTHO05D001096 7.1e-06 55.8 83 31.3


User provided reference genes

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