Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p32020 Brassica napus HOM05D003134 ORTHO05D003500 4.2e-72 274.6 142 100.0
BraA07t30832Z Brassica rapa HOM05D003134 ORTHO05D003500 4.2e-72 274.6 142 100.0
BcaC08g45971 Brassica carinata HOM05D003134 ORTHO05D003500 2.6e-66 255.4 144 93.8
C06p37610 Brassica napus HOM05D003134 ORTHO05D003500 2.6e-66 255.4 144 93.8
BolC6t38864H Brassica oleracea HOM05D003134 ORTHO05D003500 2.6e-66 255.4 144 93.8
BcaB03g15416 Brassica carinata HOM05D003134 ORTHO05D003500 2.1e-63 245.7 142 92.3
BolC2t08556H Brassica oleracea HOM05D003134 ORTHO05D003500 1.4e-59 233.0 148 85.8
BcaB05g24377 Brassica carinata HOM05D003134 ORTHO05D003500 7.6e-58 227.3 148 83.1
C02p24530 Brassica napus HOM05D003134 ORTHO05D003500 8.5e-57 223.8 148 84.5
A02p14980 Brassica napus HOM05D003134 ORTHO05D003500 1.1e-56 223.4 148 83.1
BraA02t06565Z Brassica rapa HOM05D003134 ORTHO05D003500 1.1e-56 223.4 148 83.1
Sp5g23500 Schrenkiella parvula HOM05D003134 ORTHO05D003500 5.5e-56 221.1 149 83.2
Thhalv10019521m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 4.1e-51 204.9 150 80.7
BcaC08g46286 Brassica carinata HOM05D003134 ORTHO05D003500 1.7e-49 199.5 145 78.6
BcaB03g15807 Brassica carinata HOM05D003134 ORTHO05D003500 2.5e-48 195.7 148 77.0
C06p41530 Brassica napus HOM05D003134 ORTHO05D003500 3.0e-46 188.7 147 76.2
BolC6t39271H Brassica oleracea HOM05D003134 ORTHO05D003500 3.0e-46 188.7 147 76.2
BcaC08g46282 Brassica carinata HOM05D003134 ORTHO05D003500 1.5e-45 186.4 147 75.5
A07p34840 Brassica napus HOM05D003134 ORTHO05D003500 1.5e-45 186.4 147 76.2
BraA07t31102Z Brassica rapa HOM05D003134 ORTHO05D003500 1.5e-45 186.4 147 76.2
AL2G27290 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 3.8e-41 171.8 151 69.5
Carub.0002s1492 Capsella rubella HOM05D003134 ORTHO05D003500 1.9e-40 169.5 157 68.2
CARHR061210 Cardamine hirsuta HOM05D003134 ORTHO05D003500 7.2e-40 167.5 155 66.5
Aa31LG4G14620 Aethionema arabicum HOM05D003134 ORTHO05D003500 3.7e-36 155.2 153 65.4
AT1G68430 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 9.4e-32 140.6 151 60.9
THA.LOC104808293 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 1.4e-30 136.7 164 54.9
Thecc.02G223300 Theobroma cacao HOM05D003134 ORTHO05D003500 3.7e-20 102.1 164 47.0
Ciclev10016989m.g Citrus clementina HOM05D003134 ORTHO05D003500 1.4e-19 100.1 170 44.7
Manes.06G065600 Manihot esculenta HOM05D003134 ORTHO05D003500 3.1e-19 99.0 154 44.8
Prupe.1G315800 Prunus persica HOM05D003134 ORTHO05D003500 4.1e-19 98.6 147 47.6
COL.COLO4_32156 Corchorus olitorius HOM05D003134 ORTHO05D003500 5.4e-19 98.2 164 45.1
TWI31G0745 Tripterygium wilfordii HOM05D003134 ORTHO05D003500 1.6e-18 96.7 165 44.2
Duzib251G0591 Durio zibethinus HOM05D003134 ORTHO05D003500 3.5e-18 95.5 161 46.0
Sabra10G0091400 Salix brachista HOM05D003134 ORTHO05D003500 5.9e-18 94.7 156 43.6
Cfa015853 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.0e-17 94.0 149 49.7
Gohir.D02G171600 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.7e-17 93.2 160 45.6
Gorai.005G193000 Gossypium raimondii HOM05D003134 ORTHO05D003500 1.7e-17 93.2 160 45.6
Cpa.g.sc65.57 Carica papaya HOM05D003134 ORTHO05D003500 3.8e-17 92.0 166 42.8
Potri.010G121300 Populus trichocarpa HOM05D003134 ORTHO05D003500 3.8e-17 92.0 154 39.6
Cfa015852 Carpinus fangiana HOM05D003134 ORTHO05D003500 5.0e-17 91.7 149 49.0
Cfa015849 Carpinus fangiana HOM05D003134 ORTHO05D003500 6.5e-17 91.3 153 47.1
QL01p040313 Quercus lobata HOM05D003134 ORTHO05D003500 6.5e-17 91.3 164 42.7
FvH4_4g26860 Fragaria vesca HOM05D003134 ORTHO05D003500 1.9e-16 89.7 144 45.1
CiPaw.05G241000 Carya illinoinensis HOM05D003134 ORTHO05D003500 3.3e-16 89.0 156 44.2
FAN12G3405 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.5e-16 88.2 143 44.1
Glyma.20G119200 Glycine max HOM05D003134 ORTHO05D003500 5.5e-16 88.2 144 43.8
MD16G1038900 Malus domestica HOM05D003134 ORTHO05D003500 5.5e-16 88.2 148 42.6
Gohir.A03G148500 Gossypium hirsutum HOM05D003134 ORTHO05D003500 7.2e-16 87.8 160 44.4
FAN22G0900 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.2e-15 87.0 146 45.9
RcHm_v2.0_Chr4g0434621 Rosa chinensis HOM05D003134 ORTHO05D003500 1.2e-15 87.0 147 46.3
Sabra04G0066000 Salix brachista HOM05D003134 ORTHO05D003500 1.6e-15 86.7 149 42.3
Cpa.g.sc170.42 Carica papaya HOM05D003134 ORTHO05D003500 5.2e-14 81.6 169 37.9
Oeu012575.1 Olea europaea HOM05D003134 ORTHO05D003500 5.2e-14 81.6 160 41.9
Lalb_Chr02g0145791 Lupinus albus HOM05D003134 ORTHO05D003500 6.8e-14 81.3 146 44.5
Lsat_1_v5_gn_3_80541 Lactuca sativa HOM05D003134 ORTHO05D003500 8.9e-14 80.9 148 41.9
MD13G1036300 Malus domestica HOM05D003134 ORTHO05D003500 1.2e-13 80.5 148 39.9
CSS0042149 Camellia sinensis var. sinensis HOM05D003134 ORTHO05D003500 2.0e-13 79.7 162 39.5
Duzib268G0372 Durio zibethinus HOM05D003134 ORTHO05D003500 2.0e-13 79.7 162 43.8
TAR374G1690 Trochodendron aralioides HOM05D003134 ORTHO05D003500 2.0e-13 79.7 155 40.6
FAN07G2257 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.6e-13 79.3 140 44.3
Nn3g17932 Nelumbo nucifera HOM05D003134 ORTHO05D003500 2.6e-13 79.3 162 41.4
VMungo0720G1250 Vigna mungo HOM05D000260 ORTHO05D000318 2.6e-13 79.3 145 44.1
Hma1.2p1_1109F.1_g258190 Hydrangea macrophylla HOM05D003134 ORTHO05D003500 3.4e-13 79.0 158 40.5
ClCG01G005860 Citrullus lanatus HOM05D003134 ORTHO05D003500 4.4e-13 78.6 155 41.9
Phvul.007G030600 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 5.7e-13 78.2 145 44.1
Prupe.3G146400 Prunus persica HOM05D003134 ORTHO05D003500 7.5e-13 77.8 169 40.2
CANSAT78G1475 Cannabis sativa HOM05D003134 ORTHO05D003500 1.3e-12 77.0 172 39.5
DCAR_021449 Daucus carota HOM05D003134 ORTHO05D003500 1.3e-12 77.0 154 37.7
Lj4P188T25 Lonicera japonica HOM05D003134 ORTHO05D003500 1.3e-12 77.0 155 41.3
Oeu039736.1 Olea europaea HOM05D003134 ORTHO05D003500 1.3e-12 77.0 157 38.9
CANSAT01G0067 Cannabis sativa HOM05D003134 ORTHO05D003500 1.7e-12 76.6 175 38.9
PGR119G2525 Punica granatum HOM05D003134 ORTHO05D003500 1.7e-12 76.6 152 44.7
SGA_v2.0_scaffold49G18114 Striga asiatica HOM05D003134 ORTHO05D003500 1.7e-12 76.6 151 40.4
Oeu012577.1 Olea europaea HOM05D003134 ORTHO05D003500 2.2e-12 76.3 155 40.0
SalBow5G3107 Salvia bowleyana HOM05D003134 ORTHO05D003500 2.8e-12 75.9 147 39.5
SalBow5G4218 Salvia bowleyana HOM05D003134 ORTHO05D003500 2.8e-12 75.9 147 39.5
Ciclev10013038m.g Citrus clementina HOM05D003134 ORTHO05D003500 3.7e-12 75.5 151 40.4
CsaV3_5G028830 Cucumis sativus L. HOM05D003134 ORTHO05D003500 3.7e-12 75.5 161 42.2
MELO3C008147.2 Cucumis melo HOM05D003134 ORTHO05D003500 4.9e-12 75.1 167 39.5
MD17G1247700 Malus domestica HOM05D003134 ORTHO05D003500 6.3e-12 74.7 169 39.6
PGR042G1462 Punica granatum HOM05D003134 ORTHO05D003500 6.3e-12 74.7 164 38.4
Rhsim08G0083300 Rhododendron simsii HOM05D003134 ORTHO05D003500 6.3e-12 74.7 157 40.1
Dinv33962 Davidia involucrata HOM05D003134 ORTHO05D003500 8.3e-12 74.3 162 37.7
Sed0004988 Sechium edule HOM05D003134 ORTHO05D003500 8.3e-12 74.3 152 42.8
Atru.chr1.1630 Acer truncatum HOM05D003134 ORTHO05D003500 1.8e-11 73.2 154 35.1
Medtr1g110190 Medicago truncatula HOM05D003134 ORTHO05D003500 2.4e-11 72.8 147 42.2
Oeu036853.1 Olea europaea HOM05D003134 ORTHO05D003500 2.4e-11 72.8 158 36.7
TAR433G0003 Trochodendron aralioides HOM05D003134 ORTHO05D003500 2.4e-11 72.8 154 39.0
Migut.H00233 Erythranthe guttata HOM05D003134 ORTHO05D003500 4.1e-11 72.0 164 38.4
Sp5g21880 Schrenkiella parvula HOM05D003134 ORTHO05D003500 4.1e-11 72.0 165 38.2
Actinidia17642 Actinidia chinensis HOM05D003134 ORTHO05D003500 5.4e-11 71.6 147 39.5
Sp7g03820 Schrenkiella parvula HOM05D003134 ORTHO05D003500 7.0e-11 71.2 162 38.9
Dinv34801 Davidia involucrata HOM05D003134 ORTHO05D003500 9.2e-11 70.9 161 39.1
Sc10g0001080 Simmondsia chinensis HOM05D003134 ORTHO05D003500 9.2e-11 70.9 162 40.1
FAN17G2365 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.2e-10 70.5 145 39.3
SalBow3G2725 Salvia bowleyana HOM05D003134 ORTHO05D003500 1.2e-10 70.5 149 39.6
CsaV3_2G033780 Cucumis sativus L. HOM05D003134 ORTHO05D003500 1.6e-10 70.1 170 38.2
ClCG11G007810 Citrullus lanatus HOM05D003134 ORTHO05D003500 2.0e-10 69.7 166 38.6
Cc07_g08620 Coffea canephora HOM05D003134 ORTHO05D003500 2.7e-10 69.3 170 36.5
TPR.G36596 Trifolium pratense HOM05D003134 ORTHO05D003500 2.7e-10 69.3 162 37.0
MELO3C005343.2 Cucumis melo HOM05D003134 ORTHO05D003500 3.5e-10 68.9 162 41.4
Manes.02G070500 Manihot esculenta HOM05D003134 ORTHO05D003500 3.5e-10 68.9 156 36.5
Psat6g225360 Pisum sativum HOM05D003134 ORTHO05D003500 3.5e-10 68.9 146 41.1
Potri.017G117866 Populus trichocarpa HOM05D003134 ORTHO05D003500 3.5e-10 68.9 148 37.8
Solyc02g086260.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 3.5e-10 68.9 157 38.2
Oeu008433.1 Olea europaea HOM05D003134 ORTHO05D003500 4.5e-10 68.6 157 36.3
FAN03G2307 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.0e-09 67.4 163 37.4
Sed0003377 Sechium edule HOM05D003134 ORTHO05D003500 1.3e-09 67.0 153 36.6
Solyc03g034300.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 1.3e-09 67.0 151 38.4
PGSC0003DMG400002449 Solanum tuberosum HOM05D003134 ORTHO05D003500 1.7e-09 66.6 170 34.1
unitig_0.g841 Utricularia gibba HOM05D003134 ORTHO05D003500 1.7e-09 66.6 142 35.9
C06p43260 Brassica napus HOM05D003134 ORTHO05D003500 2.3e-09 66.2 165 36.4
FAN14G3652 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.9e-09 65.9 164 36.6
Manes.01G112200 Manihot esculenta HOM05D003134 ORTHO05D003500 2.9e-09 65.9 160 36.9
Potri.004G097200 Populus trichocarpa HOM05D003134 ORTHO05D003500 2.9e-09 65.9 151 37.7
THA.LOC104823851 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 2.9e-09 65.9 155 37.4
FAN12G3727 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.8e-09 65.5 96 46.9
Duzib248G0302 Durio zibethinus HOM05D003134 ORTHO05D003500 5.0e-09 65.1 82 50.0
PGSC0003DMG400024380 Solanum tuberosum HOM05D003134 ORTHO05D003500 5.0e-09 65.1 170 33.5
ATR1125G046 Amborella trichopoda HOM05D003134 ORTHO05D003500 6.6e-09 64.7 170 34.1
Ca_08085_v3 Cicer arietinum L. HOM05D003134 ORTHO05D003500 6.6e-09 64.7 160 33.8
MBI16_g37123_MAGBIO Magnolia biondii HOM05D003134 ORTHO05D003500 6.6e-09 64.7 155 34.8
Medtr7g082520 Medicago truncatula HOM05D003134 ORTHO05D003500 6.6e-09 64.7 161 34.2
Sed0007756 Sechium edule HOM05D003134 ORTHO05D003500 6.6e-09 64.7 160 36.9
BcaB03g15220 Brassica carinata HOM05D003134 ORTHO05D003500 8.6e-09 64.3 168 34.5
FAN02G1640 Fragaria x ananassa HOM05D003134 ORTHO05D003500 8.6e-09 64.3 163 37.4
Glyma.02G088600 Glycine max HOM05D003134 ORTHO05D003500 1.1e-08 63.9 161 37.3
Psat3g098080 Pisum sativum HOM05D003134 ORTHO05D003500 1.1e-08 63.9 164 34.8
AUR62009019 Chenopodium quinoa HOM05D003134 ORTHO05D003500 1.5e-08 63.5 172 37.2
Haze_14180 Corylus avellana HOM05D003134 ORTHO05D003500 1.5e-08 63.5 171 37.4
FAN01G0579 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.5e-08 63.5 164 36.0
Lalb_Chr10g0091341 Lupinus albus HOM05D003134 ORTHO05D003500 1.5e-08 63.5 155 38.7
TAR622G0779 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.5e-08 63.5 156 34.6
TAR622G1269 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.5e-08 63.5 156 34.6
Peaxi162Scf00104g00142 Petunia axillaris HOM05D003134 ORTHO05D003500 1.9e-08 63.2 148 39.2
Potri.008G123800 Populus trichocarpa HOM05D003134 ORTHO05D003500 1.9e-08 63.2 101 44.6
Migut.L00500 Erythranthe guttata HOM05D003134 ORTHO05D003500 2.5e-08 62.8 166 36.7
Oeu030792.1 Olea europaea HOM05D000260 ORTHO05D000318 2.5e-08 62.8 148 32.4
Sopen03g007090 Solanum pennellii HOM05D003134 ORTHO05D003500 3.3e-08 62.4 154 35.1
Cfa007900 Carpinus fangiana HOM05D003134 ORTHO05D003500 4.3e-08 62.0 174 35.1
AUR62023283 Chenopodium quinoa HOM05D003134 ORTHO05D003500 4.3e-08 62.0 172 36.0
Thhalv10019248m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 4.3e-08 62.0 167 35.3
Glyma.18G294900 Glycine max HOM05D003134 ORTHO05D003500 4.3e-08 62.0 160 35.6
PSO170G0811 Papaver somniferum HOM05D003134 ORTHO05D003500 4.3e-08 62.0 163 35.6
RcHm_v2.0_Chr1g0326241 Rosa chinensis HOM05D003134 ORTHO05D003500 4.3e-08 62.0 174 35.6
Nitab4.5_0015828g0010 Nicotiana tabacum HOM05D003134 ORTHO05D003500 5.6e-08 61.6 158 34.8
BraA07t30998Z Brassica rapa HOM05D003134 ORTHO05D003500 7.3e-08 61.2 166 36.1
FAN10G2348 Fragaria x ananassa HOM05D003134 ORTHO05D003500 7.3e-08 61.2 164 35.4
Gohir.D11G171400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 7.3e-08 61.2 166 33.1
Gorai.007G183800 Gossypium raimondii HOM05D003134 ORTHO05D003500 7.3e-08 61.2 166 33.1
BcaC08g46122 Brassica carinata HOM05D003134 ORTHO05D003500 9.5e-08 60.8 166 36.1
Nitab4.5_0000625g0110 Nicotiana tabacum HOM05D003134 ORTHO05D003500 9.5e-08 60.8 158 35.4
Gohir.A11G165400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.2e-07 60.5 166 33.1
Ah.16g101650 Amaranthus hybridus HOM05D003134 ORTHO05D003500 1.6e-07 60.1 164 35.4
Nitab4.5_0000753g0120 Nicotiana tabacum HOM05D003134 ORTHO05D003500 2.1e-07 59.7 112 41.1
A07p33710 Brassica napus HOM05D003134 ORTHO05D003500 2.8e-07 59.3 167 35.9
CiPaw.03G063500 Carya illinoinensis HOM05D003134 ORTHO05D003500 3.6e-07 58.9 185 33.0
FAN28G2684 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.6e-07 58.9 164 35.4
Phvul.008G007800 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 3.6e-07 58.9 158 34.8
Lj1g0014230 Lotus japonicus HOM05D003134 ORTHO05D003500 4.7e-07 58.5 171 32.7
THA.LOC104805579 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 4.7e-07 58.5 174 33.9
EL10Ac2g04546 Beta vulgaris HOM05D003134 ORTHO05D003500 8.0e-07 57.8 171 36.3
FAN23G1965 Fragaria x ananassa HOM05D003134 ORTHO05D003500 8.0e-07 57.8 164 33.5
HanXRQChr12g0375681 Helianthus annuus HOM05D003134 ORTHO05D003500 8.0e-07 57.8 161 35.4
AL2G25140 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 1.0e-06 57.4 164 34.8
FAN10G3294 Fragaria x ananassa HOM05D000266 ORTHO05D000765 1.0e-06 57.4 164 35.4
FAN16G3541 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.4e-06 57.0 164 35.4
ECA238G3055 Erigeron canadensis HOM05D003134 ORTHO05D003500 1.8e-06 56.6 159 35.2
Peaxi162Scf00394g00095 Petunia axillaris HOM05D003134 ORTHO05D003500 1.8e-06 56.6 109 41.3
PGR004G0132 Punica granatum HOM05D003134 ORTHO05D003500 1.8e-06 56.6 164 34.1
PSO017G0284 Papaver somniferum HOM05D003134 ORTHO05D003500 2.3e-06 56.2 163 35.0
VMungo1383G0351 Vigna mungo HOM05D003134 ORTHO05D003500 2.3e-06 56.2 167 32.9
Duzib138G0856 Durio zibethinus HOM05D003134 ORTHO05D003500 3.0e-06 55.8 168 31.0
Lsat_1_v5_gn_2_81120 Lactuca sativa HOM05D003134 ORTHO05D003500 3.0e-06 55.8 157 35.0
Aa31LG2G3400 Aethionema arabicum HOM05D003134 ORTHO05D003500 4.0e-06 55.5 179 30.7
Duzib133G1507 Durio zibethinus HOM05D003134 ORTHO05D003500 6.8e-06 54.7 173 30.6
FvH4_7g03610 Fragaria vesca HOM05D003134 ORTHO05D003500 6.8e-06 54.7 166 34.9
FAN06G4960 Fragaria x ananassa HOM05D003134 ORTHO05D003500 6.8e-06 54.7 166 34.9


User provided reference genes

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