Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 2.2e-43 178.7 101 100.0
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 1.7e-27 125.9 67 98.5
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 3.8e-27 124.8 65 98.5
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 3.8e-27 124.8 65 98.5
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 3.8e-27 124.8 65 98.5
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 6.5e-27 124.0 69 92.8
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 1.4e-24 116.3 69 87.0
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 1.4e-24 116.3 65 93.8
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 1.4e-24 116.3 69 87.0
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 3.9e-24 114.8 69 85.5
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 1.5e-23 112.8 69 84.1
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 2.0e-23 112.5 76 78.9
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 2.0e-23 112.5 69 84.1
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 5.7e-23 110.9 69 84.1
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 1.1e-18 96.7 72 70.8
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 5.5e-18 94.4 70 74.3
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 7.2e-18 94.0 87 64.4
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 2.7e-17 92.0 71 69.0
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 3.6e-17 91.7 71 69.0
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 6.1e-17 90.9 84 64.3
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 6.1e-17 90.9 70 67.1
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 6.1e-17 90.9 71 69.0
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 1.0e-16 90.1 67 71.6
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 1.0e-16 90.1 71 67.6
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 1.4e-16 89.7 71 66.2
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 2.3e-16 89.0 71 64.8
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 3.0e-16 88.6 84 63.1
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 3.0e-16 88.6 71 67.6
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 3.9e-16 88.2 95 61.1
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 3.9e-16 88.2 76 63.2
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 3.9e-16 88.2 72 69.4
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 5.1e-16 87.8 67 70.1
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 8.8e-16 87.0 83 62.7
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 8.8e-16 87.0 72 63.9
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.1e-15 86.7 86 65.1
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 1.1e-15 86.7 74 63.5
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 1.1e-15 86.7 55 76.4
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 1.5e-15 86.3 71 64.8
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.5e-15 86.3 72 66.7
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.5e-15 86.3 86 65.1
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 1.5e-15 86.3 74 67.6
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 2.0e-15 85.9 67 65.7
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 2.0e-15 85.9 71 63.4
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 2.6e-15 85.5 73 63.0
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 3.3e-15 85.1 67 68.7
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 3.3e-15 85.1 71 64.8
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 4.4e-15 84.7 92 57.6
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 4.4e-15 84.7 67 62.7
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 4.4e-15 84.7 67 62.7
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 5.7e-15 84.3 59 71.2
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 5.7e-15 84.3 72 62.5
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 7.4e-15 84.0 65 66.2
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 9.7e-15 83.6 71 64.8
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 9.7e-15 83.6 71 63.4
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 1.3e-14 83.2 72 61.1
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 1.3e-14 83.2 77 66.2
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 2.2e-14 82.4 89 57.3
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 2.2e-14 82.4 71 66.2
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.2e-14 82.4 57 71.9
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 2.8e-14 82.0 70 62.9
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 2.8e-14 82.0 70 62.9
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 2.8e-14 82.0 55 70.9
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 2.8e-14 82.0 65 64.6
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 6.3e-14 80.9 66 65.2
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 6.3e-14 80.9 67 62.7
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 8.2e-14 80.5 62 69.4
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 8.2e-14 80.5 70 60.0
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 1.4e-13 79.7 69 60.9
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 1.8e-13 79.3 71 59.2
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 1.8e-13 79.3 66 65.2
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 3.1e-13 78.6 70 62.9
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 3.1e-13 78.6 71 62.0
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 4.1e-13 78.2 53 75.5
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 4.1e-13 78.2 85 61.2
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 4.1e-13 78.2 56 69.6
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 4.1e-13 78.2 57 70.2
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 4.1e-13 78.2 57 70.2
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 5.3e-13 77.8 66 63.6
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 7.0e-13 77.4 85 61.2
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 7.0e-13 77.4 85 61.2
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 7.0e-13 77.4 78 55.1
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 7.0e-13 77.4 70 60.0
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 7.0e-13 77.4 68 57.4
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 9.1e-13 77.0 67 61.2
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 1.2e-12 76.6 72 61.1
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.6e-12 76.3 70 60.0
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 2.0e-12 75.9 70 60.0
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 2.0e-12 75.9 66 62.1
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 2.6e-12 75.5 70 61.4
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 4.5e-12 74.7 88 59.1
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 7.7e-12 73.9 57 63.2
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 1.3e-11 73.2 54 64.8
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 2.2e-11 72.4 86 52.3
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 8.5e-11 70.5 61 60.7
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 1.9e-10 69.3 57 64.9
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 5.5e-10 67.8 52 67.3
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 9.4e-10 67.0 98 49.0
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 4.7e-09 64.7 71 52.1
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 1.8e-08 62.8 43 74.4
BcaB03g15444 Brassica carinata HOM05D007420 ORTHO05D009353 3.3e-07 58.5 33 93.9
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 3.3e-07 58.5 70 47.1


User provided reference genes

Program Settings