Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p31820 Brassica napus HOM05D012012 ORTHO05D013530 4.0e-37 157.5 77 100.0
BraA07t30809Z Brassica rapa HOM05D012012 ORTHO05D013530 4.0e-37 157.5 77 100.0
BcaC08g45942 Brassica carinata HOM05D012012 ORTHO05D013530 1.1e-34 149.4 76 94.7
C06p37370 Brassica napus HOM05D012012 ORTHO05D013530 1.1e-34 149.4 76 94.7
BolC6t38839H Brassica oleracea HOM05D012012 ORTHO05D013530 1.6e-33 145.6 76 93.4
A07p31830 Brassica napus HOM05D012012 ORTHO05D013530 3.2e-26 121.3 71 78.9
BraA07t30811Z Brassica rapa HOM05D012012 ORTHO05D013530 1.2e-25 119.4 71 77.5
BcaNung06173 Brassica carinata HOM05D012012 ORTHO05D013530 1.6e-25 119.0 74 79.7
BraA03t11947Z Brassica rapa HOM05D012012 ORTHO05D013530 5.1e-24 114.0 69 78.3
Sp4g00800 Schrenkiella parvula HOM05D003095 ORTHO05D003517 6.7e-24 113.6 74 75.7
C06p37390 Brassica napus HOM05D012012 ORTHO05D013530 3.7e-22 107.8 85 65.9
BolC6t38841H Brassica oleracea HOM05D012012 ORTHO05D013530 1.1e-21 106.3 85 64.7
BcaC08g45940 Brassica carinata HOM05D012012 ORTHO05D013530 5.3e-21 104.0 80 67.5
Thhalv10000397m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 1.2e-17 92.8 62 71.0
BcaB08g34990 Brassica carinata HOM05D003095 ORTHO05D003517 2.5e-15 85.1 57 71.9
AT2G21640 Arabidopsis thaliana HOM05D003095 ORTHO05D003517 4.3e-15 84.3 67 56.7
A09p58070 Brassica napus HOM05D003095 ORTHO05D003517 9.7e-15 83.2 58 69.0
BraA09t41195Z Brassica rapa HOM05D003095 ORTHO05D003517 9.7e-15 83.2 58 69.0
BcaC07g41130 Brassica carinata HOM05D001159 ORTHO05D001712 2.2e-14 82.0 57 68.4
BolC8t51695H Brassica oleracea HOM05D001159 ORTHO05D001712 2.2e-14 82.0 57 68.4
C08p41320 Brassica napus HOM05D003095 ORTHO05D003517 1.8e-13 79.0 58 63.8
AL4G10840 Arabidopsis lyrata HOM05D003095 ORTHO05D003517 4.1e-13 77.8 69 52.2
Carub.0004s0067 Capsella rubella HOM05D003095 ORTHO05D003517 6.9e-13 77.0 62 54.8
C03p32890 Brassica napus HOM05D012012 ORTHO05D013530 4.5e-12 74.3 45 75.6
CSS0033942 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 2.9e-11 71.6 66 56.1
CARHR112630 Cardamine hirsuta HOM05D003095 ORTHO05D003517 2.7e-09 65.1 44 59.1
arahy.Tifrunner.gnm1.ann1.86RK4S Arachis hypogaea HOM05D003095 ORTHO05D003517 7.9e-09 63.5 65 56.9
arahy.Tifrunner.gnm1.ann1.PX0JLD Arachis hypogaea HOM05D003095 ORTHO05D003517 7.9e-09 63.5 65 56.9
Glyma.06G309100 Glycine max HOM05D003095 ORTHO05D003517 1.0e-08 63.2 78 48.7
Psat5g223200 Pisum sativum HOM05D003095 ORTHO05D003517 1.4e-08 62.8 62 50.0
Ciclev10023076m.g Citrus clementina HOM05D003095 ORTHO05D003517 1.8e-08 62.4 67 46.3
Prupe.8G064900 Prunus persica HOM05D003095 ORTHO05D003517 2.3e-08 62.0 78 46.2
Gohir.A13G067200 Gossypium hirsutum HOM05D003095 ORTHO05D003517 3.0e-08 61.6 65 50.8
MD10G1075100 Malus domestica HOM05D003095 ORTHO05D003517 3.9e-08 61.2 75 49.3
Gohir.A13G009200 Gossypium hirsutum HOM05D003095 ORTHO05D003517 5.1e-08 60.8 62 54.8
Gorai.013G010600 Gossypium raimondii HOM05D003095 ORTHO05D003517 5.1e-08 60.8 62 54.8
Manes.17G101700 Manihot esculenta HOM05D003095 ORTHO05D003517 5.1e-08 60.8 62 50.0
Lj4g0025197 Lotus japonicus HOM05D003095 ORTHO05D003517 6.7e-08 60.5 62 48.4
Gohir.D13G009900 Gossypium hirsutum HOM05D003095 ORTHO05D003517 8.8e-08 60.1 62 54.8
Phvul.007G250700 Phaseolus vulgaris HOM05D003095 ORTHO05D003517 8.8e-08 60.1 62 50.0
Ca_14242_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 1.1e-07 59.7 64 48.4
Glyma.02G157900 Glycine max HOM05D003095 ORTHO05D003517 1.1e-07 59.7 62 51.6
Lalb_Chr25g0280921 Lupinus albus HOM05D003095 ORTHO05D003517 1.1e-07 59.7 77 46.8
Medtr3g013450 Medicago truncatula HOM05D003095 ORTHO05D003517 1.5e-07 59.3 62 48.4
THA.LOC104804132 Tarenaya hassleriana HOM05D003095 ORTHO05D003517 1.5e-07 59.3 62 51.6
Thecc.01G149400 Theobroma cacao HOM05D003095 ORTHO05D003517 1.5e-07 59.3 65 49.2
Atru.chr5.3024 Acer truncatum HOM05D003095 ORTHO05D003517 2.0e-07 58.9 65 47.7
Ca_09914_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 2.0e-07 58.9 62 48.4
Prupe.8G096200 Prunus persica HOM05D003095 ORTHO05D003517 2.0e-07 58.9 65 49.2
MBI05_g05282_MAGBIO Magnolia biondii HOM05D003095 ORTHO05D003517 2.6e-07 58.5 64 48.4
Duzib264G0230 Durio zibethinus HOM05D003095 ORTHO05D003517 3.3e-07 58.2 65 49.2
LjContig00049g0022514 Lotus japonicus HOM05D003095 ORTHO05D003517 3.3e-07 58.2 62 46.8
Nitab4.5_0011729g0020 Nicotiana tabacum HOM05D003095 ORTHO05D003517 3.3e-07 58.2 65 47.7
PSO700G0195 Papaver somniferum HOM05D003095 ORTHO05D003517 3.3e-07 58.2 45 60.0
Ciclev10029652m.g Citrus clementina HOM05D003095 ORTHO05D003517 4.4e-07 57.8 65 49.2
Cc02_g17490 Coffea canephora HOM05D003095 ORTHO05D003517 4.4e-07 57.8 71 46.5
QL09p041665 Quercus lobata HOM05D003095 ORTHO05D003517 4.4e-07 57.8 66 48.5
GSVIVG01031976001 Vitis vinifera HOM05D003095 ORTHO05D003517 5.7e-07 57.4 65 47.7
Aqoxy5G01623 Aquilegia oxysepala HOM05D003095 ORTHO05D003517 7.4e-07 57.0 65 49.2
CsaV3_2G014720 Cucumis sativus L. HOM05D003095 ORTHO05D003517 7.4e-07 57.0 58 51.7
FAN24G2144 Fragaria x ananassa HOM05D003095 ORTHO05D003517 7.4e-07 57.0 55 50.9
Nn5g29621 Nelumbo nucifera HOM05D003095 ORTHO05D003517 7.4e-07 57.0 64 46.9
arahy.Tifrunner.gnm1.ann1.7U3W9V Arachis hypogaea HOM05D003095 ORTHO05D003517 9.7e-07 56.6 65 49.2
Nn1g04978 Nelumbo nucifera HOM05D003095 ORTHO05D003517 9.7e-07 56.6 66 47.0
RcHm_v2.0_Chr6g0264531 Rosa chinensis HOM05D003095 ORTHO05D003517 9.7e-07 56.6 55 50.9
TAR381G1321 Trochodendron aralioides HOM05D003095 ORTHO05D003517 9.7e-07 56.6 70 45.7
arahy.Tifrunner.gnm1.ann1.RU14FQ Arachis hypogaea HOM05D003095 ORTHO05D003517 1.3e-06 56.2 62 48.4
Cpa.g.sc62.158 Carica papaya HOM05D003095 ORTHO05D003517 1.3e-06 56.2 65 47.7
Glyma.04G132300 Glycine max HOM05D003095 ORTHO05D003517 1.3e-06 56.2 78 43.6
Gohir.D13G054400 Gossypium hirsutum HOM05D003095 ORTHO05D003517 1.3e-06 56.2 45 57.8
Gorai.013G061200 Gossypium raimondii HOM05D003095 ORTHO05D003517 1.3e-06 56.2 45 57.8
MD05G1065400 Malus domestica HOM05D003095 ORTHO05D003517 1.3e-06 56.2 63 49.2
Peaxi162Scf00016g00073 Petunia axillaris HOM05D003095 ORTHO05D003517 1.3e-06 56.2 65 49.2
Lalb_Chr19g0128111 Lupinus albus HOM05D003095 ORTHO05D003517 1.7e-06 55.8 62 46.8
Lalb_Chr19g0128121 Lupinus albus HOM05D003095 ORTHO05D003517 1.7e-06 55.8 62 46.8
C05p61660 Brassica napus HOM05D003095 ORTHO05D003517 2.2e-06 55.5 62 46.8
FvH4_4g27401 Fragaria vesca HOM05D003095 ORTHO05D003517 2.2e-06 55.5 72 43.1
Medtr1g052680 Medicago truncatula HOM05D003095 ORTHO05D003517 2.2e-06 55.5 62 46.8
Actinidia24323 Actinidia chinensis HOM05D003095 ORTHO05D003517 2.8e-06 55.1 65 47.7
MELO3C023293.2 Cucumis melo HOM05D003095 ORTHO05D003517 2.8e-06 55.1 58 50.0
Thhalv10026620m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 2.8e-06 55.1 62 48.4
Lsat_1_v5_gn_5_117800 Lactuca sativa HOM05D003095 ORTHO05D003517 2.8e-06 55.1 56 50.0
THA.LOC104824821 Tarenaya hassleriana HOM05D003095 ORTHO05D003517 2.8e-06 55.1 62 50.0
EL10Ac2g03674 Beta vulgaris HOM05D003095 ORTHO05D003517 3.7e-06 54.7 62 45.2
Nitab4.5_0003811g0120 Nicotiana tabacum HOM05D003095 ORTHO05D003517 3.7e-06 54.7 62 45.2
Oeu055595.1 Olea europaea HOM05D003095 ORTHO05D003517 3.7e-06 54.7 65 47.7
BcaC05g30110 Brassica carinata HOM05D003095 ORTHO05D003517 4.8e-06 54.3 62 45.2
Migut.L00519 Erythranthe guttata HOM05D052693 ORTHO05D013530 4.8e-06 54.3 62 41.9
Nitab4.5_0000308g0180 Nicotiana tabacum HOM05D003095 ORTHO05D003517 4.8e-06 54.3 65 47.7
Oeu055590.1 Olea europaea HOM05D003095 ORTHO05D003517 4.8e-06 54.3 65 46.2
Rhsim11G0048900 Rhododendron simsii HOM05D003095 ORTHO05D003517 4.8e-06 54.3 62 43.5
Solyc01g109680.3 Solanum lycopersicum HOM05D003095 ORTHO05D003517 4.8e-06 54.3 61 45.9
Sopen01g051870 Solanum pennellii HOM05D003095 ORTHO05D003517 4.8e-06 54.3 61 45.9
Zm00001eb295790 Zea mays HOM05D003095 ORTHO05D003517 4.8e-06 54.3 82 41.5
Aqoxy1G01518 Aquilegia oxysepala HOM05D003095 ORTHO05D003517 6.3e-06 53.9 65 43.1
Nitab4.5_0002503g0080 Nicotiana tabacum HOM05D003095 ORTHO05D003517 6.3e-06 53.9 60 48.3
Sabra04G0103300 Salix brachista HOM05D003095 ORTHO05D003517 6.3e-06 53.9 65 47.7
TWI31G0443 Tripterygium wilfordii HOM05D003095 ORTHO05D003517 6.3e-06 53.9 65 43.1
BcaC05g30157 Brassica carinata HOM05D003095 ORTHO05D003517 8.2e-06 53.5 62 45.2
CAN.G1412.13 Capsicum annuum HOM05D003095 ORTHO05D003517 8.2e-06 53.5 65 44.6
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 8.2e-06 53.5 62 45.2
ClCG11G004390 Citrullus lanatus HOM05D003095 ORTHO05D003517 8.2e-06 53.5 58 48.3
PGR042G0984 Punica granatum HOM05D003095 ORTHO05D003517 8.2e-06 53.5 44 56.8
PGSC0003DMG400000729 Solanum tuberosum HOM05D003095 ORTHO05D003517 8.2e-06 53.5 65 46.2


User provided reference genes

Program Settings