Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 8.0e-109 397.1 204 100.0
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 1.0e-108 396.7 204 99.5
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-107 393.3 204 98.5
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 1.3e-106 389.8 204 97.1
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 5.8e-99 364.4 204 91.2
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.7e-98 362.8 201 89.1
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 3.7e-98 361.7 202 89.1
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.2e-96 356.7 202 87.1
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-96 356.7 202 87.1
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.2e-96 356.7 202 87.1
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.2e-96 356.7 202 87.1
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 4.6e-96 354.8 202 86.6
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 6.0e-96 354.4 202 86.6
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 7.8e-96 354.0 205 86.8
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 8.6e-95 350.5 202 85.6
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 3.3e-94 348.6 207 89.4
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 2.8e-93 345.5 202 85.6
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 4.7e-93 344.7 202 83.7
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 1.4e-92 343.2 202 84.7
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 4.4e-91 338.2 200 80.0
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 5.1e-87 324.7 201 78.1
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.1e-84 317.0 202 77.7
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 1.4e-84 316.6 201 77.6
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 2.0e-83 312.8 200 78.0
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 3.4e-83 312.0 183 85.2
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 7.6e-83 310.8 200 78.0
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 1.3e-82 310.1 202 76.2
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.7e-82 309.7 195 79.5
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 2.2e-82 309.3 196 80.6
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 8.4e-82 307.4 195 79.0
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 8.4e-82 307.4 201 75.6
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 1.9e-81 306.2 202 76.2
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 9.2e-81 303.9 196 78.1
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 1.2e-80 303.5 200 75.0
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.6e-80 303.1 197 75.1
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.6e-80 303.1 197 74.6
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.7e-80 302.4 179 81.6
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 2.7e-80 302.4 193 77.2
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.7e-80 302.4 193 77.2
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 2.7e-80 302.4 202 70.8
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 4.6e-80 301.6 202 75.7
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 4.6e-80 301.6 202 70.8
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 4.6e-80 301.6 195 74.9
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 6.0e-80 301.2 202 74.3
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 6.0e-80 301.2 202 75.2
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 1.0e-79 300.4 202 74.8
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.3e-79 300.1 202 70.3
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 2.3e-79 299.3 199 74.9
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.1e-79 298.1 200 74.0
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 8.6e-79 297.4 194 73.2
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 1.1e-78 297.0 196 74.0
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.5e-78 296.6 191 76.4
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.3e-78 294.3 193 75.1
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 7.3e-78 294.3 196 73.5
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 7.3e-78 294.3 200 71.5
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 7.3e-78 294.3 200 72.0
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 1.2e-77 293.5 199 72.4
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 1.6e-77 293.1 200 71.5
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.6e-77 293.1 196 71.9
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 6.2e-77 291.2 195 72.3
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 6.2e-77 291.2 189 75.1
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 6.2e-77 291.2 200 70.5
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 6.2e-77 291.2 195 71.3
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 6.2e-77 291.2 195 71.3
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 6.2e-77 291.2 199 72.9
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 3.1e-76 288.9 199 70.4
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 4.0e-76 288.5 195 71.8
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.2e-75 287.0 195 70.3
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.2e-75 287.0 197 70.6
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 2.0e-75 286.2 195 70.3
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 2.6e-75 285.8 195 71.3
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.4e-75 285.4 193 73.6
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 4.4e-75 285.0 197 69.0
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.6e-75 284.3 193 72.5
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 7.6e-75 284.3 201 67.2
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 1.3e-74 283.5 196 71.4
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.7e-74 283.1 202 70.8
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 1.7e-74 283.1 198 72.2
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.8e-74 282.0 219 65.8
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 3.8e-74 282.0 200 69.0
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.4e-74 281.2 194 73.2
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 1.4e-73 280.0 191 71.7
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 4.2e-73 278.5 195 70.3
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 1.6e-72 276.6 194 71.6
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 3.5e-72 275.4 195 69.2
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.0e-71 273.9 206 66.5
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 1.0e-71 273.9 195 68.2
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 1.7e-71 273.1 198 68.7
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 1.7e-71 273.1 197 68.5
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.3e-71 272.7 195 69.2
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 2.3e-71 272.7 202 69.3
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 3.9e-71 271.9 197 69.0
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 6.6e-71 271.2 195 66.7
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 1.9e-70 269.6 183 72.1
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 3.3e-70 268.9 197 67.0
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 1.3e-69 266.9 202 65.3
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.6e-69 266.5 198 67.2
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 1.6e-69 266.5 197 69.5
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 6.2e-69 264.6 195 66.2
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 8.1e-69 264.2 195 66.7
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 1.1e-68 263.8 202 65.3
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 6.9e-68 261.2 194 68.0
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.5e-67 260.0 181 69.6
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.0e-67 259.6 181 69.6
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 7.6e-67 257.7 178 69.7
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 1.7e-66 256.5 194 67.0
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 2.2e-66 256.1 195 64.1
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 2.9e-66 255.8 197 63.5
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.4e-65 252.7 188 68.1
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 4.2e-65 251.9 198 60.1
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 7.1e-65 251.1 326 47.2
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 6.0e-64 248.1 195 64.1
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 6.0e-64 248.1 198 65.2
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.3e-63 246.9 176 68.2
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 3.0e-63 245.7 202 62.9
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 3.6e-61 238.8 195 61.5
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 1.2e-59 233.8 168 70.8
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 7.6e-59 231.1 249 51.8
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 9.9e-59 230.7 239 54.0
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 6.0e-56 221.5 221 54.8
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.5e-54 216.9 228 53.9
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 4.0e-52 208.8 167 63.5
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 5.8e-51 204.9 198 51.5
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.3e-50 203.8 198 50.5
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 7.9e-48 194.5 225 49.8
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 5.9e-43 178.3 197 50.3
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 7.6e-43 177.9 128 70.3
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 2.2e-42 176.4 195 46.7
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 2.1e-40 169.9 120 66.7
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 3.6e-40 169.1 105 79.0
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 2.8e-37 159.5 109 70.6
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 4.8e-37 158.7 173 46.8
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.5e-35 153.7 115 67.0
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 6.5e-34 148.3 144 52.1
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 9.4e-33 144.4 111 64.9
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.2e-32 144.1 212 39.6
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 3.0e-31 139.4 91 71.4
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 9.7e-30 134.4 115 60.9
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 2.8e-29 132.9 77 80.5
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.9e-27 125.2 73 82.2
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.9e-27 125.2 73 82.2
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 2.2e-26 123.2 90 67.8
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 1.9e-25 120.2 200 37.0
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.5e-25 119.8 73 76.7
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 9.4e-25 117.9 131 48.1
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.7e-24 116.3 129 48.8
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 1.0e-23 114.4 102 60.8
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 8.8e-23 111.3 71 76.1
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 5.7e-22 108.6 102 55.9
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 1.7e-21 107.1 76 72.4
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 8.2e-21 104.8 72 69.4
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 3.5e-19 99.4 82 63.4
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 5.9e-19 98.6 77 64.9
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.7e-18 97.1 68 70.6
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 6.5e-18 95.1 195 32.8
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 4.0e-15 85.9 106 43.4
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 2.6e-14 83.2 193 30.1
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.8e-13 79.7 115 43.5
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 6.3e-13 78.6 45 80.0
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 9.1e-12 74.7 49 69.4
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 1.3e-10 70.9 71 50.7
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 4.7e-08 62.4 41 68.3
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 6.1e-08 62.0 44 63.6
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 5.2e-07 58.9 43 62.8
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 6.8e-07 58.5 48 58.3


User provided reference genes

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