Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 2.6e-49 198.4 97 100.0
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 2.6e-49 198.4 97 100.0
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 5.8e-41 170.6 85 94.1
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 1.3e-40 169.5 86 91.9
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 2.9e-40 168.3 86 90.7
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 3.8e-40 167.9 97 84.5
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 4.9e-40 167.5 86 90.7
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 4.9e-40 167.5 86 90.7
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 4.9e-40 167.5 85 91.8
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 4.9e-40 167.5 85 91.8
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 8.4e-40 166.8 97 83.5
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 1.9e-39 165.6 84 91.7
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.9e-39 165.6 84 91.7
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.9e-39 165.6 97 84.5
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 3.2e-39 164.9 84 91.7
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 2.5e-36 155.2 85 83.5
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 2.5e-36 155.2 85 83.5
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.3e-35 152.9 84 84.5
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 2.4e-34 148.7 84 78.6
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-33 145.6 92 75.0
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 7.6e-33 143.7 84 78.6
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.4e-31 139.4 96 66.7
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.4e-31 138.7 85 71.8
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 2.4e-31 138.7 85 71.8
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 2.4e-31 138.7 94 66.0
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 2.4e-31 138.7 97 62.9
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 4.2e-31 137.9 85 71.8
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 4.2e-31 137.9 84 72.6
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 5.4e-31 137.5 97 62.9
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 9.3e-31 136.7 96 64.6
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.2e-30 136.3 86 69.8
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 1.2e-30 136.3 97 61.9
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.6e-30 136.0 85 70.6
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 2.1e-30 135.6 84 71.4
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.7e-30 135.2 75 78.7
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 2.7e-30 135.2 94 64.9
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 3.5e-30 134.8 84 69.0
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 4.6e-30 134.4 84 69.0
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 4.6e-30 134.4 78 76.9
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 4.6e-30 134.4 85 68.2
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 4.6e-30 134.4 85 69.4
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 6.0e-30 134.0 86 67.4
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 6.0e-30 134.0 86 69.8
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 7.9e-30 133.7 84 70.2
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 7.9e-30 133.7 75 78.7
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 7.9e-30 133.7 75 78.7
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 7.9e-30 133.7 75 78.7
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 1.0e-29 133.3 81 69.1
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.3e-29 132.9 86 68.6
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 1.3e-29 132.9 81 69.1
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 1.3e-29 132.9 87 71.3
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.3e-29 132.9 75 78.7
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 3.0e-29 131.7 97 62.9
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 3.0e-29 131.7 86 67.4
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.0e-29 131.7 94 60.6
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 3.0e-29 131.7 81 71.6
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 3.9e-29 131.3 75 78.7
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 3.9e-29 131.3 86 67.4
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 3.9e-29 131.3 86 67.4
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 3.9e-29 131.3 86 67.4
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 5.1e-29 131.0 75 74.7
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 5.1e-29 131.0 79 72.2
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 6.7e-29 130.6 83 72.3
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 6.7e-29 130.6 75 77.3
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 6.7e-29 130.6 81 69.1
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 6.7e-29 130.6 86 67.4
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 8.7e-29 130.2 85 68.2
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.1e-28 129.8 84 73.8
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.5e-28 129.4 75 74.7
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.5e-28 129.4 75 74.7
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.5e-28 129.4 75 74.7
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 1.5e-28 129.4 84 70.2
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 1.5e-28 129.4 86 64.0
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.5e-28 129.4 85 64.7
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.9e-28 129.0 84 67.9
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 2.5e-28 128.6 86 67.4
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 3.3e-28 128.3 75 74.7
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 3.3e-28 128.3 75 74.7
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 3.3e-28 128.3 78 71.8
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 3.3e-28 128.3 78 71.8
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 3.3e-28 128.3 75 74.7
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 4.3e-28 127.9 86 64.0
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 7.4e-28 127.1 75 73.3
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 7.4e-28 127.1 75 73.3
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.3e-27 126.3 84 69.0
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 1.6e-27 125.9 75 73.3
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 1.6e-27 125.9 83 68.7
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.6e-27 125.9 83 68.7
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.6e-27 125.9 83 68.7
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 2.1e-27 125.6 85 64.7
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 2.8e-27 125.2 75 70.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 3.7e-27 124.8 86 64.0
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 4.8e-27 124.4 75 72.0
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 6.2e-27 124.0 75 72.0
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 6.2e-27 124.0 86 66.3
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 6.2e-27 124.0 75 70.7
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 1.4e-26 122.9 75 72.0
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 1.4e-26 122.9 75 70.7
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.4e-26 122.1 86 61.6
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.4e-26 122.1 86 61.6
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 4.0e-26 121.3 75 69.3
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 9.0e-26 120.2 81 66.7
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 2.0e-25 119.0 105 54.3
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 9.9e-25 116.7 68 76.5
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 1.3e-24 116.3 107 54.2
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 4.9e-24 114.4 75 68.0
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 8.4e-24 113.6 82 58.5
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 5.5e-23 110.9 63 77.8
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.6e-22 109.4 64 70.3
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 4.6e-22 107.8 63 76.2
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 1.3e-21 106.3 63 69.8
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.8e-21 105.9 77 59.7
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.8e-21 105.9 73 64.4
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.0e-21 105.1 67 82.1
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 3.9e-21 104.8 63 68.3
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 5.1e-21 104.4 69 68.1
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 6.7e-21 104.0 84 56.0
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.7e-19 98.2 66 66.7
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 2.4e-18 95.5 63 63.5
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 6.9e-18 94.0 63 58.7
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 1.5e-17 92.8 79 53.2
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.0e-17 92.4 52 69.2
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 1.0e-16 90.1 63 60.3
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 3.8e-16 88.2 57 66.7
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 3.8e-16 88.2 62 58.1
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 3.2e-15 85.1 80 50.0
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 4.2e-15 84.7 88 46.6
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 2.7e-14 82.0 92 41.3
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 1.3e-13 79.7 52 71.2
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 1.5e-12 76.3 70 48.6
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.6e-11 72.8 56 58.9
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 2.8e-11 72.0 55 54.5
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.2e-09 66.6 45 66.7
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 2.0e-09 65.9 76 44.7
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 1.7e-08 62.8 29 86.2


User provided reference genes

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