Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 1.9e-110 402.5 202 100.0
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 7.2e-110 400.6 202 99.5
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 1.2e-91 340.1 206 86.4
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 2.6e-91 339.0 206 86.4
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 7.5e-83 310.8 216 78.7
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 9.8e-75 283.9 218 74.3
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 9.8e-75 283.9 222 71.6
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 1.4e-73 280.0 214 74.3
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 1.1e-70 270.4 222 69.4
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 1.5e-70 270.0 217 70.0
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 1.5e-70 270.0 217 70.0
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 1.5e-70 270.0 217 70.0
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.0e-68 263.8 227 67.0
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 5.2e-68 261.5 218 69.7
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 6.8e-68 261.2 217 68.2
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 2.0e-67 259.6 218 69.3
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 4.4e-67 258.5 225 65.3
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 4.4e-67 258.5 214 69.2
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 4.4e-67 258.5 214 69.2
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 2.4e-65 252.7 223 66.8
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 2.3e-63 246.1 206 68.9
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 8.6e-63 244.2 224 64.7
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 3.9e-47 192.2 175 64.6
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 4.0e-44 182.2 207 55.1
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.6e-43 179.5 225 51.6
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 2.9e-42 176.0 208 54.3
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 2.1e-40 169.9 209 55.0
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 4.6e-40 168.7 192 53.1
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 8.1e-37 157.9 210 51.0
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.2e-35 154.1 208 48.1
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.3e-34 150.6 203 46.3
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 2.4e-33 146.4 210 48.1
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 1.8e-28 130.2 220 46.4
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.4e-28 129.8 191 47.1
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.9e-27 124.4 186 46.8
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 3.8e-26 122.5 185 46.5
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.9e-26 122.1 184 46.2
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 4.9e-26 122.1 206 40.3
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 8.4e-26 121.3 202 44.1
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 1.1e-25 120.9 222 43.7
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.1e-24 116.7 172 48.8
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.3e-23 114.0 217 43.8
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 2.3e-23 113.2 177 44.6
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 3.9e-23 112.5 181 48.6
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 5.1e-23 112.1 214 40.7
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 1.5e-22 110.5 203 41.4
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 1.5e-22 110.5 188 42.0
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.5e-22 109.8 170 43.5
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 2.5e-22 109.8 199 42.2
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 3.3e-22 109.4 222 41.4
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 3.3e-22 109.4 182 45.6
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 7.4e-22 108.2 189 40.7
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 9.6e-22 107.8 205 41.0
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 9.6e-22 107.8 176 44.3
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 1.3e-21 107.5 207 36.7
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.6e-21 107.1 219 41.1
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 1.6e-21 107.1 182 44.0
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 2.1e-21 106.7 184 41.8
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 2.8e-21 106.3 178 42.7
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 4.8e-21 105.5 193 42.0
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 6.2e-21 105.1 168 42.9
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 2.4e-20 103.2 188 41.0
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.4e-20 103.2 196 39.8
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 2.4e-20 103.2 140 44.3
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 3.1e-20 102.8 162 41.4
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 5.3e-20 102.1 239 38.1
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 5.3e-20 102.1 211 38.9
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 6.9e-20 101.7 177 42.4
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 6.9e-20 101.7 163 42.9
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.6e-19 99.8 166 43.4
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 2.6e-19 99.8 180 39.4
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 3.4e-19 99.4 166 40.4
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 3.4e-19 99.4 216 38.4
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 3.4e-19 99.4 193 43.5
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 5.8e-19 98.6 190 41.1
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 5.8e-19 98.6 181 43.1
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 7.6e-19 98.2 164 43.9
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 1.0e-18 97.8 165 41.8
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 1.7e-18 97.1 132 43.2
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 1.7e-18 97.1 199 39.7
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.7e-18 97.1 174 41.4
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.2e-18 96.7 170 41.2
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 3.8e-18 95.9 154 39.0
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 6.5e-18 95.1 209 39.7
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 6.5e-18 95.1 186 43.0
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 8.4e-18 94.7 184 37.5
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 8.4e-18 94.7 198 38.4
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 8.4e-18 94.7 198 38.4
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 8.4e-18 94.7 158 41.8
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 8.4e-18 94.7 155 39.4
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 1.1e-17 94.4 198 38.4
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 1.4e-17 94.0 155 40.0
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 1.9e-17 93.6 176 42.6
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 1.9e-17 93.6 173 40.5
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.5e-17 93.2 192 41.1
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 7.1e-17 91.7 177 39.0
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 9.3e-17 91.3 180 37.2
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 1.6e-16 90.5 163 38.7
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 2.7e-16 89.7 203 36.5
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 4.6e-16 89.0 164 39.0
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 6.0e-16 88.6 179 38.0
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 6.0e-16 88.6 158 37.3
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 7.9e-16 88.2 137 40.1
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 7.9e-16 88.2 187 39.0
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 1.8e-15 87.0 158 37.3
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 2.3e-15 86.7 210 34.8
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 3.0e-15 86.3 192 43.2
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 3.0e-15 86.3 180 40.6
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 3.0e-15 86.3 147 38.8
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 3.9e-15 85.9 159 39.0
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.7e-15 85.1 184 37.0
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.1e-14 84.3 184 37.0
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 1.1e-14 84.3 162 37.7
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.5e-14 84.0 192 34.9
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 2.5e-14 83.2 149 38.9
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 4.3e-14 82.4 177 41.8
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 9.6e-14 81.3 229 37.6
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 9.6e-14 81.3 148 42.6
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.6e-13 80.5 184 36.4
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 3.7e-13 79.3 164 39.0
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 4.8e-13 79.0 190 40.0
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 6.2e-13 78.6 188 38.3
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 8.2e-13 78.2 169 39.1
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.1e-12 77.8 179 38.5
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.4e-12 77.4 216 31.5
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 2.6e-11 73.2 135 42.2
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.3e-10 70.9 157 37.6
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.3e-10 70.9 140 47.1
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.3e-10 70.9 195 32.8
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 5.0e-10 68.9 175 34.3
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 8.4e-10 68.2 144 41.7
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.1e-09 67.8 126 42.1
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.5e-09 66.6 144 41.7
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 4.2e-09 65.9 182 36.3
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 7.1e-09 65.1 179 34.1
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 6.1e-08 62.0 189 33.3
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 5.1e-07 58.9 179 29.6
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 7.4e-06 55.1 116 39.7


User provided reference genes

Program Settings