Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 1.3e-45 186.0 98 100.0
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 6.7e-45 183.7 98 99.0
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 4.3e-44 181.0 98 94.9
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 8.2e-43 176.8 98 95.9
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 1.8e-42 175.6 98 94.9
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 1.8e-42 175.6 98 92.9
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 1.8e-42 175.6 98 92.9
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 2.4e-42 175.3 98 92.9
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 2.4e-42 175.3 98 92.9
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 2.4e-42 175.3 98 92.9
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 2.4e-42 175.3 98 92.9
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 2.4e-42 175.3 98 92.9
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 4.1e-42 174.5 98 94.9
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 4.1e-42 174.5 98 92.9
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 9.0e-42 173.3 98 93.9
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 1.2e-41 172.9 98 92.9
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 1.5e-41 172.6 98 92.9
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 4.5e-41 171.0 98 92.9
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 5.9e-41 170.6 98 90.8
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 5.9e-41 170.6 98 90.8
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 5.9e-41 170.6 98 90.8
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 5.9e-41 170.6 98 90.8
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 5.9e-41 170.6 98 90.8
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 7.7e-41 170.2 98 89.8
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 2.2e-40 168.7 98 90.8
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 2.5e-39 165.2 98 87.8
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 2.5e-39 165.2 98 89.8
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 2.1e-38 162.2 98 86.7
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.4e-37 159.5 98 83.7
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 1.1e-36 156.4 98 80.6
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 1.3e-35 152.9 98 78.6
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 6.3e-35 150.6 98 78.6
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 1.1e-34 149.8 98 77.6
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.1e-34 149.8 98 77.6
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.1e-34 149.8 98 76.5
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.8e-34 149.1 98 79.6
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 2.4e-34 148.7 98 76.5
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 5.3e-34 147.5 98 77.6
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 9.1e-34 146.7 98 75.5
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 9.1e-34 146.7 98 75.5
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.6e-33 145.2 98 72.4
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 2.6e-33 145.2 98 77.6
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 75.5
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.9e-33 144.1 98 71.4
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.9e-33 144.1 98 71.4
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 7.7e-33 143.7 98 74.5
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 7.7e-33 143.7 100 74.0
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 1.0e-32 143.3 98 70.4
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.0e-32 143.3 98 70.4
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 1.7e-32 142.5 100 73.0
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 1.7e-32 142.5 100 73.0
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 72.4
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 6.5e-32 140.6 98 70.4
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 6.5e-32 140.6 99 76.8
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 8.5e-32 140.2 98 72.4
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 8.5e-32 140.2 98 69.4
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 8.5e-32 140.2 98 71.4
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 1.1e-31 139.8 99 71.7
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 1.1e-31 139.8 100 74.0
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 1.9e-31 139.0 98 71.4
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.9e-31 139.0 99 75.8
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 3.2e-31 138.3 100 73.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 4.2e-31 137.9 100 72.0
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 5.5e-31 137.5 104 71.2
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 7.2e-31 137.1 104 70.2
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 7.2e-31 137.1 98 69.4
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 7.2e-31 137.1 100 71.0
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.6e-30 136.0 101 75.2
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 1.6e-30 136.0 100 72.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 1.6e-30 136.0 100 72.0
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 69.7
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 3.6e-30 134.8 98 71.4
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 4.7e-30 134.4 98 71.4
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 4.7e-30 134.4 98 68.4
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 6.1e-30 134.0 100 70.0
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 7.9e-30 133.7 99 72.7
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 1.4e-29 132.9 99 72.7
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.4e-29 132.9 99 72.7
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.4e-29 132.9 99 72.7
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.3e-29 132.1 99 71.7
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.3e-29 132.1 98 72.4
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 2.3e-29 132.1 99 70.7
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.0e-29 131.7 100 69.0
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 3.9e-29 131.3 97 67.0
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 5.1e-29 131.0 98 67.3
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 8.8e-29 130.2 98 66.3
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.1e-28 129.8 99 70.7
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 1.1e-28 129.8 99 66.7
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 1.1e-28 129.8 100 71.0
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 1.5e-28 129.4 98 66.3
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.0e-28 129.0 98 68.4
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 2.0e-28 129.0 122 59.0
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 2.6e-28 128.6 98 66.3
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 3.3e-28 128.3 100 68.0
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 3.3e-28 128.3 100 68.0
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.3e-28 128.3 101 67.3
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.3e-28 128.3 99 68.7
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.3e-28 128.3 99 68.7
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 3.3e-28 128.3 98 66.3
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 4.4e-28 127.9 99 69.7
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 5.7e-28 127.5 100 69.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 5.7e-28 127.5 100 69.0
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 9.7e-28 126.7 98 70.4
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 2.2e-27 125.6 102 68.6
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 2.8e-27 125.2 99 66.7
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 3.7e-27 124.8 102 67.6
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 4.8e-27 124.4 99 66.7
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 8.2e-27 123.6 99 68.7
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 8.2e-27 123.6 98 68.4
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 8.2e-27 123.6 75 77.3
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 8.2e-27 123.6 99 65.7
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.4e-26 122.9 101 69.3
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.4e-26 122.9 97 68.0
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 1.4e-26 122.9 99 64.6
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 3.1e-26 121.7 96 63.5
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 4.1e-26 121.3 98 68.4
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 5.3e-26 120.9 98 66.3
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 7.0e-26 120.6 75 76.0
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 7.0e-26 120.6 75 76.0
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 7.0e-26 120.6 75 76.0
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 9.1e-26 120.2 98 67.3
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.2e-25 119.8 75 77.3
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 1.2e-25 119.8 98 65.3
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 1.5e-25 119.4 100 65.0
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.6e-25 118.6 95 67.4
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 3.5e-25 118.2 98 63.3
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 1.3e-24 116.3 98 65.3
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.3e-24 116.3 71 78.9
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 2.2e-24 115.5 98 61.2
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 2.2e-24 115.5 88 68.2
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 2.9e-24 115.2 109 61.5
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 3.8e-24 114.8 99 63.6
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.8e-24 114.8 98 65.3
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.8e-24 114.8 98 62.2
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.8e-24 114.8 98 62.2
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 3.8e-24 114.8 88 68.2
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 8.5e-24 113.6 78 73.1
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 1.1e-23 113.2 99 60.6
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 1.1e-23 113.2 96 59.4
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 1.9e-23 112.5 71 78.9
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 7.2e-23 110.5 98 60.2
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 7.2e-23 110.5 98 60.2
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 3.6e-22 108.2 83 71.1
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 3.6e-22 108.2 97 59.8
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 4.7e-22 107.8 107 57.0
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 1.0e-21 106.7 83 66.3
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 1.8e-21 105.9 97 55.7
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.3e-21 105.5 63 79.4
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 6.7e-21 104.0 60 76.7
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 1.8e-18 95.9 93 57.0
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 1.2e-17 93.2 64 67.2
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 1.4e-10 69.7 97 42.3
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 3.1e-10 68.6 75 46.7
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 4.1e-10 68.2 75 49.3
Mapoly0001s0236 Marchantia polymorpha HOM05D004752 ORTHO05D005523 7.0e-10 67.4 102 43.1
Psat2g095760 Pisum sativum HOM05D000552 ORTHO05D005523 2.1e-06 55.8 53 56.6


User provided reference genes

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