Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p29520 Brassica napus HOM05D000311 ORTHO05D000183 5.3e-53 211.5 173 100.0
BraA07t30592Z Brassica rapa HOM05D000311 ORTHO05D000183 3.7e-46 188.7 193 86.5
C06p33490 Brassica napus HOM05D000311 ORTHO05D000183 3.6e-41 172.2 192 53.1
BolC6t38467H Brassica oleracea HOM05D000311 ORTHO05D000183 3.6e-41 172.2 192 53.1
BcaC05g24569 Brassica carinata HOM05D000311 ORTHO05D000183 4.8e-38 161.8 187 83.4
AT1G74170 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 3.0e-32 142.5 192 66.7
C06p48340 Brassica napus HOM05D000311 ORTHO05D000183 4.4e-31 138.7 193 72.5
BolC6t39865H Brassica oleracea HOM05D000311 ORTHO05D000183 9.7e-31 137.5 191 72.8
Thhalv10018082m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 1.4e-29 133.7 193 69.4
C06p48370 Brassica napus HOM05D000311 ORTHO05D000183 2.4e-29 132.9 189 73.0
CARHR060140 Cardamine hirsuta HOM05D000311 ORTHO05D000183 3.1e-29 132.5 192 72.9
CARHR067360 Cardamine hirsuta HOM05D000311 ORTHO05D000183 2.0e-28 129.8 192 72.4
CARHR067550 Cardamine hirsuta HOM05D000311 ORTHO05D000183 2.0e-28 129.8 174 77.6
Thhalv10018093m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 2.0e-28 129.8 193 72.5
Thhalv10018158m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 3.5e-28 129.0 191 72.3
AL2G34080 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 4.5e-28 128.6 189 73.0
CARHR220400 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.0e-27 127.5 193 72.5
A07p40030 Brassica napus HOM05D000311 ORTHO05D000183 1.7e-27 126.7 191 71.7
AT1G74190 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 2.9e-27 125.9 191 73.3
BcaB05g24838 Brassica carinata HOM05D000311 ORTHO05D000183 2.9e-27 125.9 191 71.7
BcaB03g15370 Brassica carinata HOM05D000311 ORTHO05D000183 5.0e-27 125.2 193 70.5
Thhalv10018202m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 1.1e-26 124.0 191 71.7
Thhalv10018074m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 4.2e-26 122.1 193 71.5
Thhalv10018087m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 9.4e-26 120.9 194 65.5
BraA07t31544Z Brassica rapa HOM05D000311 ORTHO05D000183 2.7e-25 119.4 191 69.6
CARHR067350 Cardamine hirsuta HOM05D000311 ORTHO05D000183 3.6e-25 119.0 192 70.3
BcaC08g45607 Brassica carinata HOM05D000311 ORTHO05D000183 4.7e-25 118.6 194 70.1
BcaC08g46821 Brassica carinata HOM05D000311 ORTHO05D000183 4.7e-25 118.6 176 71.0
C06p48300 Brassica napus HOM05D000311 ORTHO05D000183 2.3e-24 116.3 186 71.0
CARHR067320 Cardamine hirsuta HOM05D000311 ORTHO05D000183 2.3e-24 116.3 191 70.7
BcaC05g24568 Brassica carinata HOM05D000311 ORTHO05D000183 5.2e-24 115.2 192 68.8
BcaB02g07056 Brassica carinata HOM05D000311 ORTHO05D000183 8.8e-24 114.4 186 67.7
A07p40040 Brassica napus HOM05D000311 ORTHO05D000183 8.8e-24 114.4 192 68.8
C02p31700 Brassica napus HOM05D000311 ORTHO05D000183 1.1e-23 114.0 187 56.7
Sp5g29380 Schrenkiella parvula HOM05D000311 ORTHO05D000183 3.3e-23 112.5 193 66.3
CARHR067420 Cardamine hirsuta HOM05D000311 ORTHO05D000183 4.4e-23 112.1 192 68.2
BcaC08g45603 Brassica carinata HOM05D000311 ORTHO05D000183 5.7e-23 111.7 186 70.4
BcaC08g46848 Brassica carinata HOM05D000311 ORTHO05D000183 7.5e-23 111.3 191 67.0
C02p31730 Brassica napus HOM05D000311 ORTHO05D000183 9.7e-23 110.9 192 62.0
BcaB05g24837 Brassica carinata HOM05D000311 ORTHO05D000183 3.7e-22 109.0 193 57.5
Carub.0002s1339 Capsella rubella HOM05D000311 ORTHO05D000183 3.7e-22 109.0 187 69.0
CARHR067390 Cardamine hirsuta HOM05D000311 ORTHO05D000183 3.7e-22 109.0 172 51.7
CARHR050360 Cardamine hirsuta HOM05D000311 ORTHO05D000183 6.3e-22 108.2 191 70.2
Aa31LG4G4490 Aethionema arabicum HOM05D000311 ORTHO05D000183 8.2e-22 107.8 185 69.2
A02p19140 Brassica napus HOM05D000311 ORTHO05D000183 1.4e-21 107.1 193 66.3
BraA07t30591Z Brassica rapa HOM05D000311 ORTHO05D000183 3.1e-21 105.9 193 67.9
A07p29500 Brassica napus HOM05D000311 ORTHO05D000183 4.1e-21 105.5 193 67.4
BolC2t09198H Brassica oleracea HOM05D000311 ORTHO05D000183 4.1e-21 105.5 194 66.0
BraA02t06964Z Brassica rapa HOM05D000311 ORTHO05D000183 9.1e-21 104.4 191 67.5
CARHR067410 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.2e-20 104.0 185 65.9
BcaC03g15487 Brassica carinata HOM05D000311 ORTHO05D000183 2.0e-20 103.2 187 65.8
BcaC08g45538 Brassica carinata HOM05D000311 ORTHO05D000183 4.5e-20 102.1 196 48.5
BcaB05g24841 Brassica carinata HOM05D000311 ORTHO05D000183 1.3e-19 100.5 189 66.1
CARHR067450 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.3e-19 100.5 190 65.8
BolC2t09200H Brassica oleracea HOM05D000311 ORTHO05D000183 6.5e-19 98.2 94 56.4
C06p33520 Brassica napus HOM05D000311 ORTHO05D000183 8.5e-19 97.8 184 66.3
BolC6t38465H Brassica oleracea HOM05D000311 ORTHO05D000183 8.5e-19 97.8 184 66.3
BcaB05g24842 Brassica carinata HOM05D000311 ORTHO05D000183 1.1e-18 97.4 99 51.5
BcaB07g31881 Brassica carinata HOM05D000311 ORTHO05D000183 1.1e-18 97.4 189 63.0
C06p33550 Brassica napus HOM05D000311 ORTHO05D000183 3.2e-18 95.9 183 66.1
CARHR019250 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.2e-17 94.0 190 63.2
BcaB07g31882 Brassica carinata HOM05D000311 ORTHO05D000183 2.1e-17 93.2 191 64.9
A06p14730 Brassica napus HOM05D000311 ORTHO05D000183 2.1e-17 93.2 191 65.4
A02p19170 Brassica napus HOM05D000311 ORTHO05D000183 2.7e-17 92.8 193 58.5
C06p34920 Brassica napus HOM05D000311 ORTHO05D000183 1.0e-16 90.9 74 58.1
C06p32140 Brassica napus HOM05D000311 ORTHO05D000183 1.4e-16 90.5 59 67.8
BolC6t39866H Brassica oleracea HOM05D000311 ORTHO05D000183 2.3e-16 89.7 186 66.1
A06p14740 Brassica napus HOM05D000311 ORTHO05D000183 5.2e-16 88.6 190 64.2
CARHR067560 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.3e-14 84.0 57 71.9
BcaC05g25757 Brassica carinata HOM05D000311 ORTHO05D000183 1.4e-13 80.5 75 57.3
AT2G25470 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 2.4e-13 79.7 189 64.0
C06p38520 Brassica napus HOM05D000311 ORTHO05D000183 1.0e-11 74.3 151 73.5
A04p19230 Brassica napus HOM05D000311 ORTHO05D000183 2.9e-11 72.8 194 61.3
BraA04t17523Z Brassica rapa HOM05D000022 ORTHO05D000183 2.9e-11 72.8 192 61.5
BcaC02g08634 Brassica carinata HOM05D000311 ORTHO05D000183 5.0e-11 72.0 190 59.5
BolC4t26761H Brassica oleracea HOM05D000311 ORTHO05D000183 5.0e-11 72.0 190 59.5
CARHR115420 Cardamine hirsuta HOM05D000311 ORTHO05D000183 8.5e-11 71.2 188 61.2
BcaC08g45602 Brassica carinata HOM05D000311 ORTHO05D000183 1.1e-10 70.9 109 92.7
BolC4t27017H Brassica oleracea HOM05D000311 ORTHO05D000183 1.1e-10 70.9 176 62.5
AT1G58190 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 1.5e-10 70.5 184 60.3
CARHR163040 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.5e-10 70.5 184 62.5
Thhalv10023329m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 1.9e-10 70.1 186 54.3
AT1G54475 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 3.2e-10 69.3 190 60.5
A07p21470 Brassica napus HOM05D000311 ORTHO05D000183 3.2e-10 69.3 186 61.3
BraA07t29834Z Brassica rapa HOM05D000311 ORTHO05D000183 3.2e-10 69.3 186 61.3
Carub.0004s0514 Capsella rubella HOM05D000311 ORTHO05D000183 4.2e-10 68.9 193 57.5
BcaC08g46822 Brassica carinata HOM05D000311 ORTHO05D000183 5.5e-10 68.6 186 61.3
CARHR218490 Cardamine hirsuta HOM05D000311 ORTHO05D000183 7.2e-10 68.2 150 68.0
C06p21070 Brassica napus HOM05D000311 ORTHO05D000183 9.4e-10 67.8 186 60.8
AT3G53240 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 1.2e-09 67.4 192 58.3
Ciclev10027313m.g Citrus clementina HOM05D000311 ORTHO05D000183 1.2e-09 67.4 185 59.5
BolC6t37292H Brassica oleracea HOM05D000311 ORTHO05D000183 1.6e-09 67.0 186 37.1
AL4G16880 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 2.1e-09 66.6 185 63.2
AL5G34150 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 2.1e-09 66.6 193 58.0
C06p33570 Brassica napus HOM05D000311 ORTHO05D000183 2.1e-09 66.6 157 69.4
Ciclev10024777m.g Citrus clementina HOM05D000311 ORTHO05D000183 2.1e-09 66.6 191 59.7
Ciclev10025151m.g Citrus clementina HOM05D000311 ORTHO05D000183 2.1e-09 66.6 186 57.5
AL1G64890 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 2.7e-09 66.2 191 60.2
Ciclev10027581m.g Citrus clementina HOM05D000311 ORTHO05D000183 2.7e-09 66.2 183 60.7
Carub.0007s3543 Capsella rubella HOM05D000311 ORTHO05D000183 4.7e-09 65.5 190 60.5
AT1G74180 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 6.1e-09 65.1 195 58.5
Manes.11G060231 Manihot esculenta HOM05D000311 ORTHO05D000183 8.0e-09 64.7 196 55.6
THA.LOC104800714 Tarenaya hassleriana HOM05D000311 ORTHO05D000183 8.0e-09 64.7 191 57.1
Thhalv10023377m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 1.0e-08 64.3 188 58.0
Carub.0002s0642 Capsella rubella HOM05D000311 ORTHO05D000183 1.4e-08 63.9 187 58.8
Carub.0004s0513 Capsella rubella HOM05D000311 ORTHO05D000183 1.4e-08 63.9 190 58.4
Ciclev10025042m.g Citrus clementina HOM05D000311 ORTHO05D000183 1.4e-08 63.9 194 54.6
BcaB01g03008 Brassica carinata HOM05D000311 ORTHO05D000183 2.3e-08 63.2 193 58.5
Manes.11G060055 Manihot esculenta HOM05D000311 ORTHO05D000183 2.3e-08 63.2 195 57.4
BcaB02g07799 Brassica carinata HOM05D000311 ORTHO05D000183 3.0e-08 62.8 194 57.2
Manes.11G055436 Manihot esculenta HOM05D000311 ORTHO05D000183 4.0e-08 62.4 195 57.4
Manes.11G060000 Manihot esculenta HOM05D000311 ORTHO05D000183 5.2e-08 62.0 194 57.2
Carub.0004s0512 Capsella rubella HOM05D000311 ORTHO05D000183 6.8e-08 61.6 189 60.3
CARHR061450 Cardamine hirsuta HOM05D000311 ORTHO05D000183 6.8e-08 61.6 163 37.4
Ciclev10024083m.g Citrus clementina HOM05D000311 ORTHO05D000183 6.8e-08 61.6 189 56.6
Manes.11G055428 Manihot esculenta HOM05D000311 ORTHO05D000183 6.8e-08 61.6 195 57.4
Manes.11G055420 Manihot esculenta HOM05D000311 ORTHO05D000183 8.8e-08 61.2 195 56.9
AL1G17540 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 1.2e-07 60.8 190 56.3
Carub.0002s0936 Capsella rubella HOM05D000311 ORTHO05D000183 1.2e-07 60.8 190 58.9
CARHR053860 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.2e-07 60.8 187 56.1
Manes.11G060061 Manihot esculenta HOM05D000311 ORTHO05D000183 1.2e-07 60.8 195 56.9
Carub.0004s0515 Capsella rubella HOM05D000311 ORTHO05D000183 1.5e-07 60.5 185 59.5
Thhalv10010101m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 1.5e-07 60.5 197 56.3
Carub.0002s2099 Capsella rubella HOM05D000094 ORTHO05D003883 2.0e-07 60.1 61 52.5
CARHR053840 Cardamine hirsuta HOM05D000311 ORTHO05D018764 2.0e-07 60.1 182 59.3
Manes.11G060255 Manihot esculenta HOM05D000311 ORTHO05D000183 2.0e-07 60.1 195 56.9
Ciclev10027124m.g Citrus clementina HOM05D000311 ORTHO05D000183 2.6e-07 59.7 184 57.6
Medtr2g016200 Medicago truncatula HOM05D000311 ORTHO05D000183 2.6e-07 59.7 183 57.9
TPR.G38647 Trifolium pratense HOM05D000311 ORTHO05D000183 3.4e-07 59.3 186 56.5
Sp6g07570 Schrenkiella parvula HOM05D000094 ORTHO05D003883 4.4e-07 58.9 54 53.7
TAR626G0484 Trochodendron aralioides HOM05D000311 ORTHO05D000183 4.4e-07 58.9 188 54.8
AT1G07390 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 5.7e-07 58.5 192 54.7
BcaB06g28018 Brassica carinata HOM05D000311 ORTHO05D000183 5.7e-07 58.5 192 58.3
C02p20740 Brassica napus HOM05D000094 ORTHO05D003883 5.7e-07 58.5 102 39.2
Ciclev10025139m.g Citrus clementina HOM05D000311 ORTHO05D000183 7.5e-07 58.2 195 54.9
BcaC01g01646 Brassica carinata HOM05D000311 ORTHO05D000183 9.8e-07 57.8 194 55.2
C02p31740 Brassica napus HOM05D000094 ORTHO05D003883 1.3e-06 57.4 63 47.6
Ciclev10025153m.g Citrus clementina HOM05D000311 ORTHO05D000183 1.3e-06 57.4 195 54.9
CARHR007110 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.7e-06 57.0 191 55.0
Ciclev10024794m.g Citrus clementina HOM05D000311 ORTHO05D000183 1.7e-06 57.0 195 54.4
Ciclev10027505m.g Citrus clementina HOM05D000311 ORTHO05D000183 1.7e-06 57.0 195 54.4
BolC3t13452H Brassica oleracea HOM05D000311 ORTHO05D000183 2.2e-06 56.6 189 58.7
Medtr8g077105 Medicago truncatula HOM05D000311 ORTHO05D000183 2.8e-06 56.2 183 56.8
TAR626G1657 Trochodendron aralioides HOM05D000311 ORTHO05D000183 2.8e-06 56.2 187 56.1
AL1G17310 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 3.7e-06 55.8 189 55.6
Sed0026723 Sechium edule HOM05D000311 ORTHO05D000183 3.7e-06 55.8 188 54.8
A08p26580 Brassica napus HOM05D000311 ORTHO05D000183 4.9e-06 55.5 193 56.0
BraA08t34610Z Brassica rapa HOM05D000311 ORTHO05D000183 4.9e-06 55.5 193 56.0
CARHR067430 Cardamine hirsuta HOM05D000311 ORTHO05D000183 4.9e-06 55.5 65 47.7
AL1G17550 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 6.3e-06 55.1 192 53.6
BcaC09g49504 Brassica carinata HOM05D000311 ORTHO05D000183 6.3e-06 55.1 186 56.5
Ciclev10025050m.g Citrus clementina HOM05D000311 ORTHO05D000183 6.3e-06 55.1 165 63.0
Nitab4.5_0007230g0030 Nicotiana tabacum HOM05D000311 ORTHO05D000183 6.3e-06 55.1 172 61.0


User provided reference genes

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