Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p29490 Brassica napus HOM05D004083 ORTHO05D005029 1.4e-249 865.9 473 100.0
BraA07t30587Z Brassica rapa HOM05D004083 ORTHO05D005029 1.3e-234 816.2 473 95.1
C06p33480 Brassica napus HOM05D004083 ORTHO05D005029 4.1e-217 758.1 476 88.0
BolC6t38462H Brassica oleracea HOM05D004083 ORTHO05D005029 4.1e-217 758.1 476 88.0
BcaC08g45598 Brassica carinata HOM05D004083 ORTHO05D005029 9.0e-196 687.2 474 81.9
Sp5g29430 Schrenkiella parvula HOM05D004083 ORTHO05D005029 1.2e-134 484.2 551 58.4
AL2G34130 Arabidopsis lyrata HOM05D004083 ORTHO05D005029 2.0e-131 473.4 546 57.5
CARHR067510 Cardamine hirsuta HOM05D004083 ORTHO05D005029 7.5e-126 454.9 554 54.3
AT1G74250 Arabidopsis thaliana HOM05D004083 ORTHO05D005029 4.1e-124 449.1 547 55.0
Thhalv10018249m.g Eutrema salsugineum HOM05D004083 ORTHO05D005029 1.2e-123 447.6 555 55.3
BraA02t06969Z Brassica rapa HOM05D004083 ORTHO05D005029 3.6e-120 436.0 527 56.0
Carub.0002s2104 Capsella rubella HOM05D004083 ORTHO05D005029 5.2e-119 432.2 546 54.6
BcaB05g24846 Brassica carinata HOM05D004083 ORTHO05D005029 4.1e-116 422.5 542 55.9
BcaC08g46857 Brassica carinata HOM05D004083 ORTHO05D005029 5.0e-114 415.6 516 58.5
A02p19220 Brassica napus HOM05D004083 ORTHO05D005029 7.5e-110 401.7 532 54.5
C02p31810 Brassica napus HOM05D004083 ORTHO05D005029 1.1e-103 381.3 528 52.7
Aa31LG4G4540 Aethionema arabicum HOM05D004083 ORTHO05D005029 2.2e-101 373.6 555 49.5
BolC2t09208H Brassica oleracea HOM05D004083 ORTHO05D005029 9.2e-100 368.2 526 52.1
BcaC03g15492 Brassica carinata HOM05D004083 ORTHO05D005029 3.8e-93 346.3 516 49.6
BcaC03g15497 Brassica carinata HOM05D004083 ORTHO05D005029 3.9e-90 336.3 514 48.8
THA.LOC104812102 Tarenaya hassleriana HOM05D004083 ORTHO05D005029 2.9e-77 293.5 558 43.4
Atru.chr9.431 Acer truncatum HOM05D004083 ORTHO05D005029 8.4e-77 292.0 528 43.4
Manes.06G085000 Manihot esculenta HOM05D004083 ORTHO05D005029 3.2e-76 290.0 533 40.7
Ciclev10019373m.g Citrus clementina HOM05D004083 ORTHO05D005029 4.2e-76 289.7 535 40.6
Dinv22784 Davidia involucrata HOM05D004083 ORTHO05D005029 2.3e-74 283.9 522 41.0
Lalb_Chr13g0302881 Lupinus albus HOM05D004083 ORTHO05D005029 1.1e-73 281.6 546 40.5
Gorai.008G198800 Gossypium raimondii HOM05D004083 ORTHO05D005029 5.6e-73 279.3 511 41.9
Gohir.D12G185400 Gossypium hirsutum HOM05D004083 ORTHO05D005029 1.3e-72 278.1 511 41.3
Gohir.A12G182366 Gossypium hirsutum HOM05D004083 ORTHO05D005029 1.4e-71 274.6 506 40.9
Rhsim08G0146200 Rhododendron simsii HOM05D004083 ORTHO05D005029 2.4e-71 273.9 527 39.5
Prupe.5G204600 Prunus persica HOM05D004083 ORTHO05D005029 2.0e-70 270.8 513 40.4
Potri.009G018400 Populus trichocarpa HOM05D004083 ORTHO05D005029 2.6e-70 270.4 519 39.7
CsaV3_1G002890 Cucumis sativus L. HOM05D004083 ORTHO05D005029 3.4e-70 270.0 518 40.2
Solyc03g115140.4 Solanum lycopersicum HOM05D004083 ORTHO05D005029 5.8e-70 269.2 539 38.8
Duzib205G0149 Durio zibethinus HOM05D004083 ORTHO05D005029 1.0e-69 268.5 502 39.6
CDE04G1128 Ceratophyllum demersum HOM05D004083 ORTHO05D005029 2.9e-69 266.9 533 38.5
CiPaw.11G052900 Carya illinoinensis HOM05D004083 ORTHO05D005029 3.8e-69 266.5 525 37.7
TAR264G0004 Trochodendron aralioides HOM05D004083 ORTHO05D005029 3.8e-69 266.5 555 37.7
Phvul.003G185100 Phaseolus vulgaris HOM05D004083 ORTHO05D005029 4.9e-69 266.2 552 38.0
MD06G1202400 Malus domestica HOM05D004083 ORTHO05D005029 1.4e-68 264.6 522 40.2
PGSC0003DMG400024541 Solanum tuberosum HOM05D004083 ORTHO05D005029 4.2e-68 263.1 533 37.5
Sopen03g034200 Solanum pennellii HOM05D004083 ORTHO05D005029 5.5e-68 262.7 538 38.8
arahy.Tifrunner.gnm1.ann1.UN52J1 Arachis hypogaea HOM05D004083 ORTHO05D005029 9.3e-68 261.9 546 38.5
HPP92_009477 Vanilla planifolia HOM05D004083 ORTHO05D005029 4.6e-67 259.6 487 37.4
Lj5C102T12 Lonicera japonica HOM05D004083 ORTHO05D005029 6.0e-67 259.2 534 38.6
Eucgr.B00587 Eucalyptus grandis HOM05D004083 ORTHO05D005029 1.0e-66 258.5 534 39.1
Ca_21778_v3 Cicer arietinum L. HOM05D004083 ORTHO05D005029 1.3e-66 258.1 576 36.1
MELO3C017222.2 Cucumis melo HOM05D004083 ORTHO05D005029 6.7e-66 255.8 506 38.5
FAN08G2807 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.8e-64 250.4 537 37.8
Aqoxy3G03641 Aquilegia oxysepala HOM05D004083 ORTHO05D005029 3.7e-64 250.0 545 37.6
RcHm_v2.0_Chr7g0183041 Rosa chinensis HOM05D004083 ORTHO05D005029 4.8e-64 249.6 554 39.4
MD14G1211500 Malus domestica HOM05D004083 ORTHO05D005029 8.2e-64 248.8 520 39.4
Sabra09G0010400 Salix brachista HOM05D004083 ORTHO05D005029 1.1e-63 248.4 593 37.1
HanXRQChr16g0502431 Helianthus annuus HOM05D004083 ORTHO05D005029 5.3e-63 246.1 550 38.7
Oeu014402.1 Olea europaea HOM05D004083 ORTHO05D005029 5.3e-63 246.1 527 36.6
ClCG06G015670 Citrullus lanatus HOM05D004083 ORTHO05D005029 1.2e-62 245.0 521 38.2
ECA232G3573 Erigeron canadensis HOM05D004083 ORTHO05D005029 1.5e-62 244.6 532 36.7
Sed0001011 Sechium edule HOM05D004083 ORTHO05D005029 1.5e-62 244.6 550 37.6
Glyma.17G078100 Glycine max HOM05D004083 ORTHO05D005029 3.4e-62 243.4 558 36.9
Lsat_1_v5_gn_5_22480 Lactuca sativa HOM05D004083 ORTHO05D005029 7.7e-62 242.3 483 38.7
Oeu042728.1 Olea europaea HOM05D004083 ORTHO05D005029 7.7e-62 242.3 536 34.9
MSTRG.9600 Avicennia marina HOM05D004083 ORTHO05D005029 1.0e-61 241.9 521 37.6
Cpa.g.sc94.53 Carica papaya HOM05D004083 ORTHO05D005029 2.9e-61 240.4 271 50.9
CAN.G1228.28 Capsicum annuum HOM05D004083 ORTHO05D000105 5.0e-61 239.6 495 39.0
VMungo1215G1356 Vigna mungo HOM05D004083 ORTHO05D005029 4.2e-60 236.5 317 47.9
FvH4_5g13920 Fragaria vesca HOM05D004083 ORTHO05D005029 5.5e-60 236.1 558 37.6
Medtr4g109510 Medicago truncatula HOM05D004083 ORTHO05D005029 7.2e-60 235.7 560 36.1
FAN13G2878 Fragaria x ananassa HOM05D004083 ORTHO05D005029 9.4e-60 235.3 571 37.5
Sc04g0004330 Simmondsia chinensis HOM05D004083 ORTHO05D005029 1.2e-59 235.0 514 36.6
vmacro17608 Vaccinium macrocarpon HOM05D004083 ORTHO05D005029 1.2e-59 235.0 514 37.0
Hma1.2p1_0060F.1_g033140 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 2.1e-59 234.2 509 36.5
Ah.11g047840 Amaranthus hybridus HOM05D004083 ORTHO05D005029 2.7e-59 233.8 529 34.0
Haze_07719 Corylus avellana HOM05D004083 ORTHO05D005029 4.6e-59 233.0 499 39.5
TPR.G2055 Trifolium pratense HOM05D004083 ORTHO05D005029 7.9e-59 232.3 555 36.6
arahy.Tifrunner.gnm1.ann1.9WPU3R Arachis hypogaea HOM05D004083 ORTHO05D005029 1.0e-58 231.9 531 36.3
Cfa019327 Carpinus fangiana HOM05D004083 ORTHO05D005029 1.0e-58 231.9 429 43.1
Hma1.2p1_0060F.1_g033150 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 1.0e-58 231.9 511 36.4
MBI19_g37728_MAGBIO Magnolia biondii HOM05D004083 ORTHO05D005029 1.4e-58 231.5 536 37.3
Nn3g17443 Nelumbo nucifera HOM05D004083 ORTHO05D005029 3.0e-58 230.3 524 36.3
PGR083G0930 Punica granatum HOM05D004083 ORTHO05D005029 3.0e-58 230.3 537 35.6
Lsat_1_v5_gn_4_111021 Lactuca sativa HOM05D004083 ORTHO05D005029 1.1e-57 228.4 274 54.0
Lj4g0020958 Lotus japonicus HOM05D004083 ORTHO05D005029 3.3e-57 226.9 550 36.5
Glyma.05G021300 Glycine max HOM05D004083 ORTHO05D005029 7.4e-57 225.7 539 35.4
FAN18G2285 Fragaria x ananassa HOM05D004083 ORTHO05D005029 9.7e-57 225.3 511 37.2
QL10p019423 Quercus lobata HOM05D004083 ORTHO05D005029 9.7e-57 225.3 546 37.4
PSO478G3647 Papaver somniferum HOM05D004083 ORTHO05D005029 1.7e-56 224.6 523 35.2
SGA_v2.0_scaffold42G16038 Striga asiatica HOM05D004083 ORTHO05D005029 8.2e-56 222.2 550 34.9
EL10Ac5g11124 Beta vulgaris HOM05D004083 ORTHO05D005029 3.1e-55 220.3 565 35.4
Zm00001eb409280 Zea mays HOM05D004083 ORTHO05D005029 5.3e-55 219.5 341 41.3
DCAR_023173 Daucus carota HOM05D004083 ORTHO05D005029 1.2e-54 218.4 510 36.9
PSO017G0790 Papaver somniferum HOM05D004083 ORTHO05D005029 4.5e-54 216.5 523 35.4
TWI15G0273 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 5.9e-54 216.1 550 34.2
SHI27062 Sapria himalayana HOM05D004083 ORTHO05D005029 1.7e-53 214.5 418 37.3
AUR62008522 Chenopodium quinoa HOM05D004083 ORTHO05D005029 3.8e-53 213.4 510 34.1
Lalb_Chr12g0197191 Lupinus albus HOM05D004083 ORTHO05D005029 3.8e-53 213.4 232 50.4
Solyc03g115120.1 Solanum lycopersicum HOM05D004083 ORTHO05D005029 1.9e-52 211.1 230 52.6
Sopen03g034190 Solanum pennellii HOM05D004083 ORTHO05D005029 3.2e-52 210.3 230 53.0
Zm00001eb409390 Zea mays HOM05D004083 ORTHO05D005029 1.2e-51 208.4 289 44.3
SEGI_38744 Sequoiadendron giganteum HOM05D004083 ORTHO05D005029 2.1e-51 207.6 572 31.8
SalBow2G0571 Salvia bowleyana HOM05D004083 ORTHO05D005029 5.1e-50 203.0 504 35.9
Zm00001eb409300 Zea mays HOM05D004083 ORTHO05D005029 5.1e-50 203.0 289 43.3
Zm00001eb409350 Zea mays HOM05D004083 ORTHO05D005029 6.7e-50 202.6 289 43.6
Nitab4.5_0012564g0020 Nicotiana tabacum HOM05D004083 ORTHO05D005029 2.0e-49 201.1 541 35.1
Migut.D01668 Erythranthe guttata HOM05D004083 ORTHO05D005029 5.7e-49 199.5 531 33.9
CANSAT80G2443 Cannabis sativa HOM05D004083 ORTHO05D005029 8.2e-48 195.7 435 36.6
Hund02589 Selenicereus undatus HOM05D004083 ORTHO05D005029 1.1e-47 195.3 528 33.9
CBR_g40972 Chara braunii HOM05D004083 ORTHO05D005029 1.8e-47 194.5 270 43.3
SalBow7G3022 Salvia bowleyana HOM05D004083 ORTHO05D005029 1.8e-47 194.5 538 35.1
ATR0064G112 Amborella trichopoda HOM05D004083 ORTHO05D005029 3.5e-46 190.3 506 33.2
Os12g0502700 Oryza sativa ssp. japonica HOM05D004083 ORTHO05D005029 3.5e-46 190.3 511 32.9
SMO203G0173 Selaginella moellendorffii HOM05D004083 ORTHO05D005029 4.7e-43 179.9 268 40.7
Peaxi162Scf00201g00248 Petunia axillaris HOM05D004083 ORTHO05D005029 2.2e-40 171.0 540 31.5
Mapoly0088s0065 Marchantia polymorpha HOM05D004083 ORTHO05D005029 6.3e-40 169.5 318 35.5
Cc00_g07590 Coffea canephora HOM05D004083 ORTHO05D005029 5.0e-37 159.8 478 33.9
AagrBONN_evm.TU.Sc2ySwM_228.3286 Anthoceros agrestis HOM05D004083 ORTHO05D005029 6.5e-37 159.5 275 35.3
Nitab4.5_0001485g0130 Nicotiana tabacum HOM05D004083 ORTHO05D005029 6.5e-37 159.5 384 37.0
FvH4_4g18280 Fragaria vesca HOM05D004083 ORTHO05D005029 2.6e-33 147.5 401 34.9
RcHm_v2.0_Chr7g0183051 Rosa chinensis HOM05D004083 ORTHO05D005029 2.6e-33 147.5 396 36.4
FvH4_5g13880 Fragaria vesca HOM05D004083 ORTHO05D005029 4.4e-33 146.7 361 33.8
PGSC0003DMG400024540 Solanum tuberosum HOM05D004083 ORTHO05D005029 2.8e-32 144.1 166 47.0
MCO13G099 Micromonas commoda HOM05D004083 ORTHO05D005029 4.1e-31 140.2 248 34.3
Pp3c5_3270 Physcomitrium patens HOM05D004083 ORTHO05D005029 7.0e-31 139.4 610 28.2
RcHm_v2.0_Chr7g0200711 Rosa chinensis HOM05D004083 ORTHO05D005029 9.1e-31 139.0 436 33.0
AUR62021567 Chenopodium quinoa HOM05D004083 ORTHO05D005029 1.7e-29 134.8 518 30.7
FvH4_5g00881 Fragaria vesca HOM05D004083 ORTHO05D005029 2.1e-27 127.9 429 30.8
Psat0s3618g0080 Pisum sativum HOM05D004083 ORTHO05D005029 1.0e-26 125.6 527 28.1
FAN18G2457 Fragaria x ananassa HOM05D004083 ORTHO05D005029 1.8e-26 124.8 429 31.5
Actinidia00358 Actinidia chinensis HOM05D004083 ORTHO05D005029 1.5e-25 121.7 224 40.2
unitig_748.g8703 Utricularia gibba HOM05D004083 ORTHO05D005029 1.5e-25 121.7 512 30.7
FAN04G0828 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.6e-25 120.9 425 31.5
RcHm_v2.0_Chr7g0200511 Rosa chinensis HOM05D004083 ORTHO05D005029 4.4e-25 120.2 201 45.3
Cre05.g240650 Chlamydomonas reinhardtii HOM05D004083 ORTHO05D005029 6.3e-24 116.3 258 37.6
FAN12G2651 Fragaria x ananassa HOM05D004083 ORTHO05D005029 6.3e-24 116.3 368 33.7
Actinidia05940 Actinidia chinensis HOM05D004083 ORTHO05D005029 5.9e-22 109.8 80 63.8
FAN24G2149 Fragaria x ananassa HOM05D004083 ORTHO05D005029 1.0e-21 109.0 179 39.7
Thecc.03G101200 Theobroma cacao HOM05D004083 ORTHO05D005029 3.8e-21 107.1 336 33.0
TWI56G0106 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 1.5e-20 105.1 278 30.6
TWI12G1289 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 8.9e-18 95.9 149 39.6
TWI56G1375 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 2.0e-17 94.7 135 40.7
FAN13G1062 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.6e-17 94.4 368 29.1
RcHm_v2.0_Chr2g0129321 Rosa chinensis HOM05D004083 ORTHO05D005029 1.1e-15 89.0 90 43.3
Actinidia16125 Actinidia chinensis HOM05D004083 ORTHO05D005029 5.0e-13 80.1 69 58.0
PRCOL_00006068 Prasinoderma coloniale HOM05D004083 ORTHO05D005029 9.5e-12 75.9 501 25.3
Cfa025727 Carpinus fangiana HOM05D004083 ORTHO05D005029 8.9e-10 69.3 472 23.3
Hma1.2p1_0456F.1_g156540 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 1.5e-09 68.6 179 30.7
Zm00001eb409320 Zea mays HOM05D004083 ORTHO05D005029 1.5e-09 68.6 68 47.1
SHI32030 Sapria himalayana HOM05D004083 ORTHO05D005029 4.4e-09 67.0 392 27.3
FAN06G1810 Fragaria x ananassa HOM05D004083 ORTHO05D005029 4.9e-08 63.5 40 67.5
FAN17G1600 Fragaria x ananassa HOM05D004083 ORTHO05D005029 4.9e-08 63.5 40 67.5
FAN21G0677 Fragaria x ananassa HOM05D004083 ORTHO05D005029 4.9e-08 63.5 40 67.5
FAN02G1868 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.4e-07 61.2 40 65.0
GSVIVG01033228001 Vitis vinifera HOM05D004083 ORTHO05D005029 1.6e-06 58.5 254 28.7
ATR0064G035 Amborella trichopoda HOM05D004083 ORTHO05D005029 6.0e-06 56.6 129 31.8


User provided reference genes

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