Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p29310 Brassica napus HOM05D006971 ORTHO05D041645 1.4e-30 135.6 64 100.0
BraA07t30570Z Brassica rapa HOM05D006971 ORTHO05D041645 1.4e-30 135.6 64 100.0
BcaB05g24862 Brassica carinata HOM05D006971 ORTHO05D009076 1.1e-11 72.8 56 73.2
CARHR067910 Cardamine hirsuta HOM05D006971 ORTHO05D009076 1.9e-11 72.0 56 71.4
BcaC03g15516 Brassica carinata HOM05D006971 ORTHO05D009076 5.4e-11 70.5 55 72.7
A02p19460 Brassica napus HOM05D006971 ORTHO05D009076 5.4e-11 70.5 55 72.7
C02p31990 Brassica napus HOM05D006971 ORTHO05D009076 5.4e-11 70.5 55 72.7
BraA02t06985Z Brassica rapa HOM05D006971 ORTHO05D009076 5.4e-11 70.5 55 72.7
Sp5g29760 Schrenkiella parvula HOM05D006971 ORTHO05D009076 5.4e-11 70.5 56 69.6
AL2G34520 Arabidopsis lyrata HOM05D006971 ORTHO05D009076 9.2e-11 69.7 55 70.9
AT1G74640 Arabidopsis thaliana HOM05D006971 ORTHO05D009076 1.2e-10 69.3 55 70.9
Carub.0002s2143 Capsella rubella HOM05D006971 ORTHO05D009076 1.2e-10 69.3 55 70.9
Aa31LG4G4870 Aethionema arabicum HOM05D006971 ORTHO05D009076 6.0e-10 67.0 48 72.9
Migut.D01821 Erythranthe guttata HOM05D006971 ORTHO05D009076 1.3e-09 65.9 48 68.8
MSTRG.4425 Avicennia marina HOM05D006971 ORTHO05D009076 1.7e-09 65.5 48 68.8
PGSC0003DMG400019536 Solanum tuberosum HOM05D006971 ORTHO05D009076 1.7e-09 65.5 48 66.7
THA.LOC104808268 Tarenaya hassleriana HOM05D006971 ORTHO05D009076 1.7e-09 65.5 47 72.3
Peaxi162Scf00274g00071 Petunia axillaris HOM05D006971 ORTHO05D009076 2.3e-09 65.1 48 66.7
Solyc03g116110.3 Solanum lycopersicum HOM05D006971 ORTHO05D009076 2.3e-09 65.1 48 66.7
Sopen03g035080 Solanum pennellii HOM05D006971 ORTHO05D009076 2.3e-09 65.1 48 66.7
Lj4g0026607 Lotus japonicus HOM05D006971 ORTHO05D009076 5.0e-09 63.9 48 66.7
Nitab4.5_0000842g0110 Nicotiana tabacum HOM05D006971 ORTHO05D009076 5.0e-09 63.9 48 64.6
Nitab4.5_0004704g0010 Nicotiana tabacum HOM05D006971 ORTHO05D009076 5.0e-09 63.9 48 64.6
CAN.G837.13 Capsicum annuum HOM05D006971 ORTHO05D009076 6.6e-09 63.5 48 64.6
QL10p016808 Quercus lobata HOM05D006971 ORTHO05D009076 6.6e-09 63.5 48 64.6
SalBow7G4263 Salvia bowleyana HOM05D006971 ORTHO05D009076 6.6e-09 63.5 48 66.7
Ciclev10020174m.g Citrus clementina HOM05D006971 ORTHO05D009076 8.6e-09 63.2 48 68.8
Oeu006511.1 Olea europaea HOM05D006971 ORTHO05D009076 8.6e-09 63.2 48 64.6
CiPaw.11G044200 Carya illinoinensis HOM05D006971 ORTHO05D009076 1.1e-08 62.8 48 64.6
Cc04_g16660 Coffea canephora HOM05D006971 ORTHO05D009076 1.1e-08 62.8 48 64.6
Actinidia04895 Actinidia chinensis HOM05D006971 ORTHO05D009076 1.5e-08 62.4 48 64.6
Lalb_Chr07g0178011 Lupinus albus HOM05D006971 ORTHO05D009076 1.5e-08 62.4 48 66.7
Cpa.g.sc111.5 Carica papaya HOM05D006971 ORTHO05D009076 1.9e-08 62.0 48 64.6
TWI15G1038 Tripterygium wilfordii HOM05D006971 ORTHO05D009076 1.9e-08 62.0 48 62.5
unitig_60.g25418 Utricularia gibba HOM05D006971 ORTHO05D009076 1.9e-08 62.0 48 66.7
Ah.02g113480 Amaranthus hybridus HOM05D006971 ORTHO05D009076 2.5e-08 61.6 48 64.6
CSS0007636 Camellia sinensis var. sinensis HOM05D006971 ORTHO05D009076 2.5e-08 61.6 48 62.5
CSS0034788 Camellia sinensis var. sinensis HOM05D006971 ORTHO05D009076 2.5e-08 61.6 48 62.5
Eucgr.B00501 Eucalyptus grandis HOM05D006971 ORTHO05D009076 2.5e-08 61.6 48 62.5
Glyma.05G027100 Glycine max HOM05D006971 ORTHO05D009076 2.5e-08 61.6 48 62.5
Aqoxy3G04167 Aquilegia oxysepala HOM05D006971 ORTHO05D009076 3.3e-08 61.2 48 64.6
Glyma.17G099600 Glycine max HOM05D006971 ORTHO05D009076 3.3e-08 61.2 48 62.5
Phvul.003G190500 Phaseolus vulgaris HOM05D006971 ORTHO05D009076 3.3e-08 61.2 48 62.5
Thecc.03G086400 Theobroma cacao HOM05D006971 ORTHO05D009076 3.3e-08 61.2 48 64.6
TPR.G9261 Trifolium pratense HOM05D006971 ORTHO05D009076 3.3e-08 61.2 48 64.6
VMungo1215G2247 Vigna mungo HOM05D006971 ORTHO05D009076 3.3e-08 61.2 48 62.5
GSVIVG01008006001 Vitis vinifera HOM05D006971 ORTHO05D009076 3.3e-08 61.2 48 62.5
CANSAT80G1552 Cannabis sativa HOM05D006971 ORTHO05D009076 4.3e-08 60.8 48 62.5
FvH4_5g14981 Fragaria vesca HOM05D006971 ORTHO05D009076 4.3e-08 60.8 48 62.5
FAN04G0596 Fragaria x ananassa HOM05D006971 ORTHO05D009076 4.3e-08 60.8 48 62.5
FAN08G1158 Fragaria x ananassa HOM05D006971 ORTHO05D009076 4.3e-08 60.8 48 62.5
FAN18G2929 Fragaria x ananassa HOM05D006971 ORTHO05D009076 4.3e-08 60.8 48 62.5
Gohir.A08G094100 Gossypium hirsutum HOM05D006971 ORTHO05D009076 4.3e-08 60.8 48 60.4
MD14G1199800 Malus domestica HOM05D006971 ORTHO05D009076 4.3e-08 60.8 48 62.5
Prupe.5G193100 Prunus persica HOM05D006971 ORTHO05D009076 4.3e-08 60.8 48 62.5
RcHm_v2.0_Chr7g0181351 Rosa chinensis HOM05D006971 ORTHO05D009076 4.3e-08 60.8 48 62.5
arahy.Tifrunner.gnm1.ann1.NVD91E Arachis hypogaea HOM05D006971 ORTHO05D009076 5.6e-08 60.5 48 60.4
arahy.Tifrunner.gnm1.ann1.QE88UD Arachis hypogaea HOM05D006971 ORTHO05D009076 5.6e-08 60.5 48 60.4
COL.COLO4_28316 Corchorus olitorius HOM05D006971 ORTHO05D009076 5.6e-08 60.5 48 62.5
Dinv38707 Davidia involucrata HOM05D006971 ORTHO05D009076 5.6e-08 60.5 48 60.4
ECA246G1831 Erigeron canadensis HOM05D006971 ORTHO05D009076 5.6e-08 60.5 48 62.5
HanXRQChr05g0158151 Helianthus annuus HOM05D006971 ORTHO05D009076 5.6e-08 60.5 48 62.5
Medtr0493s0030 Medicago truncatula HOM05D006971 ORTHO05D009076 5.6e-08 60.5 48 62.5
PSO017G5818 Papaver somniferum HOM05D006971 ORTHO05D009076 5.6e-08 60.5 48 66.7
PSO478G0283 Papaver somniferum HOM05D006971 ORTHO05D009076 5.6e-08 60.5 48 66.7
SGA_v2.0_scaffold114G31906 Striga asiatica HOM05D006971 ORTHO05D009076 5.6e-08 60.5 48 62.5
TAR629G1638 Trochodendron aralioides HOM05D006971 ORTHO05D009076 5.6e-08 60.5 48 60.4
MELO3C001980.2 Cucumis melo HOM05D006971 ORTHO05D009076 7.3e-08 60.1 48 62.5
CsaV3_1G005470 Cucumis sativus L. HOM05D006971 ORTHO05D009076 7.3e-08 60.1 48 62.5
Duzib205G0087 Durio zibethinus HOM05D006971 ORTHO05D009076 7.3e-08 60.1 48 60.4
Gohir.D08G105301 Gossypium hirsutum HOM05D006971 ORTHO05D009076 7.3e-08 60.1 48 60.4
Gorai.004G112200 Gossypium raimondii HOM05D006971 ORTHO05D009076 7.3e-08 60.1 48 60.4
Lsat_1_v5_gn_5_20140 Lactuca sativa HOM05D006971 ORTHO05D009076 7.3e-08 60.1 48 62.5
Nn4g23158 Nelumbo nucifera HOM05D006971 ORTHO05D009076 7.3e-08 60.1 48 62.5
Psat4g051280 Pisum sativum HOM05D006971 ORTHO05D009076 7.3e-08 60.1 48 62.5
Ca_21824_v3 Cicer arietinum L. HOM05D006971 ORTHO05D009076 9.5e-08 59.7 48 62.5
PGR083G0834 Punica granatum HOM05D006971 ORTHO05D009076 9.5e-08 59.7 48 60.4
Sed0024719 Sechium edule HOM05D006971 ORTHO05D009076 1.2e-07 59.3 48 62.5
Rhsim08G0155400 Rhododendron simsii HOM05D006971 ORTHO05D009076 1.6e-07 58.9 48 60.4
vmacro17544 Vaccinium macrocarpon HOM05D006971 ORTHO05D009076 1.6e-07 58.9 48 60.4
ATR0564G273 Amborella trichopoda HOM05D006971 ORTHO05D009076 2.1e-07 58.5 48 62.5
Zm00001eb099580 Zea mays HOM05D006971 ORTHO05D009076 2.1e-07 58.5 48 60.4
AUR62008412 Chenopodium quinoa HOM05D006971 ORTHO05D009076 2.8e-07 58.2 48 58.3
Lj9A463T31 Lonicera japonica HOM05D006971 ORTHO05D009076 2.8e-07 58.2 48 58.3
DCAR_016549 Daucus carota HOM05D006971 ORTHO05D009076 3.6e-07 57.8 48 62.5
FAN13G3185 Fragaria x ananassa HOM05D006971 ORTHO05D009076 4.7e-07 57.4 48 58.3
CDE07G1445 Ceratophyllum demersum HOM05D006971 ORTHO05D009076 6.2e-07 57.0 48 62.5
Os09g0413700 Oryza sativa ssp. japonica HOM05D006971 ORTHO05D009076 6.2e-07 57.0 48 58.3
Manes.06G092900 Manihot esculenta HOM05D006971 ORTHO05D009076 1.1e-06 56.2 48 58.3
Sabra17G0095300 Salix brachista HOM05D006971 ORTHO05D009076 1.8e-06 55.5 48 60.4
Potri.017G115100 Populus trichocarpa HOM05D006971 ORTHO05D009076 3.1e-06 54.7 48 60.4
Cfa018946 Carpinus fangiana HOM05D006971 ORTHO05D009076 5.2e-06 53.9 48 56.2
Mapoly0071s0120 Marchantia polymorpha HOM05D006971 ORTHO05D009076 5.2e-06 53.9 48 56.2
Mapoly0229s0006 Marchantia polymorpha HOM05D006971 ORTHO05D009076 5.2e-06 53.9 48 56.2
AagrBONN_evm.TU.Sc2ySwM_368.527 Anthoceros agrestis HOM05D006971 ORTHO05D009076 8.9e-06 53.1 48 52.1
HPP92_027581 Vanilla planifolia HOM05D006971 ORTHO05D009076 8.9e-06 53.1 48 56.2


User provided reference genes

Program Settings