Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 1.4e-111 406.4 212 100.0
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 5.4e-108 394.4 214 97.2
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 1.5e-94 349.7 213 87.8
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 1.5e-94 349.7 213 87.8
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 2.4e-92 342.4 215 86.5
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 1.3e-88 330.1 220 83.6
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 7.9e-83 310.8 190 86.8
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 7.4e-73 277.7 209 73.2
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 2.9e-69 265.8 227 70.0
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 7.4e-65 251.1 210 68.6
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 6.9e-63 244.6 221 63.3
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 2.2e-45 186.4 107 86.0
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 1.6e-38 163.7 264 43.2
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.9e-36 156.8 208 43.3
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.2e-35 154.1 212 42.0
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.2e-35 154.1 212 42.0
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 3.6e-35 152.5 204 44.1
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 3.6e-35 152.5 200 45.5
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 2.3e-34 149.8 221 41.6
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 2.3e-34 149.8 210 42.9
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 8.8e-34 147.9 121 56.2
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 5.7e-33 145.2 207 41.1
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 5.7e-33 145.2 201 42.3
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 1.7e-32 143.7 211 42.7
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 2.2e-32 143.3 200 44.0
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 6.3e-32 141.7 217 41.9
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 1.4e-31 140.6 216 43.5
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 1.8e-31 140.2 212 42.0
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 7.0e-31 138.3 112 55.4
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 7.0e-31 138.3 221 39.8
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 1.6e-30 137.1 131 52.7
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 1.6e-30 137.1 219 38.8
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 2.7e-30 136.3 153 47.1
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 1.0e-29 134.4 194 42.3
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 2.2e-29 133.3 220 38.6
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 2.2e-29 133.3 151 47.0
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 5.0e-29 132.1 211 39.3
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 6.5e-29 131.7 226 37.2
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 8.5e-29 131.3 215 40.5
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 1.1e-28 131.0 218 37.2
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.9e-28 130.2 210 40.5
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 4.2e-28 129.0 210 40.5
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 9.4e-28 127.9 206 37.4
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 9.4e-28 127.9 203 38.4
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 2.7e-27 126.3 204 37.7
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 1.4e-26 124.0 113 46.9
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 4.0e-26 122.5 224 34.8
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 4.1e-23 112.5 196 37.8
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 3.5e-22 109.4 226 35.8
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 1.3e-21 107.5 181 40.3
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 6.8e-18 95.1 187 35.3
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 8.8e-18 94.7 186 33.9
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 1.2e-17 94.4 208 31.7
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.5e-17 94.0 186 33.9
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 2.0e-17 93.6 186 33.3
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 2.0e-17 93.6 279 30.5
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 4.4e-17 92.4 176 33.5
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 5.7e-17 92.0 188 35.6
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 1.3e-16 90.9 203 33.5
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.7e-16 90.5 189 34.9
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 2.8e-16 89.7 198 32.3
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 4.9e-16 89.0 188 35.1
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 6.3e-16 88.6 176 33.0
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 7.0e-15 85.1 118 36.4
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 1.2e-14 84.3 176 32.4
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 2.7e-14 83.2 191 33.5
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 2.7e-14 83.2 201 32.8
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 4.5e-14 82.4 128 35.9
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 4.5e-14 82.4 198 34.8
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 5.9e-14 82.0 184 29.9
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 7.7e-14 81.6 190 34.2
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 1.3e-13 80.9 104 40.4
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 1.3e-13 80.9 154 39.0
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 2.3e-13 80.1 180 30.6
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 2.9e-13 79.7 117 37.6
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 2.9e-13 79.7 173 33.5
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 5.0e-13 79.0 196 32.1
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 5.0e-13 79.0 190 31.1
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 6.6e-13 78.6 118 34.7
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 6.6e-13 78.6 201 30.3
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.1e-12 77.8 118 33.9
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.1e-12 77.8 183 30.1
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 1.5e-12 77.4 220 28.2
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 2.5e-12 76.6 211 29.9
Eucgr.A00749 Eucalyptus grandis HOM05D005772 ORTHO05D006468 2.5e-12 76.6 152 38.8
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 2.5e-12 76.6 192 33.9
Haze_16205 Corylus avellana HOM05D005772 ORTHO05D006468 4.3e-12 75.9 170 35.9
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 7.3e-12 75.1 164 31.1
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 9.5e-12 74.7 200 28.0
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 1.2e-11 74.3 119 30.3
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 1.2e-11 74.3 211 28.0
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 1.2e-11 74.3 190 30.0
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 1.2e-11 74.3 207 30.4
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 1.6e-11 73.9 118 33.1
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 2.1e-11 73.6 170 32.4
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 2.8e-11 73.2 204 30.4
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 3.6e-11 72.8 100 41.0
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 3.6e-11 72.8 206 33.5
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 4.7e-11 72.4 208 28.8
Duzib192G0394 Durio zibethinus HOM05D005772 ORTHO05D006468 6.1e-11 72.0 146 33.6
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 8.0e-11 71.6 198 28.8
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 8.0e-11 71.6 82 41.5
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 1.0e-10 71.2 116 32.8
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 1.4e-10 70.9 143 29.4
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 1.4e-10 70.9 208 28.4
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 5.2e-10 68.9 178 31.5
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 5.2e-10 68.9 132 33.3
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 6.8e-10 68.6 103 30.1
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 8.9e-10 68.2 178 30.9
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 1.2e-09 67.8 151 31.1
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 1.5e-09 67.4 177 30.5
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 2.0e-09 67.0 168 27.4
Atru.chr1.2602 Acer truncatum HOM05D005772 ORTHO05D006468 5.7e-09 65.5 139 34.5
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 7.5e-09 65.1 166 26.5
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 9.8e-09 64.7 219 29.2
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 1.7e-08 63.9 193 26.9
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 1.1e-07 61.2 194 28.9
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.0e-06 57.0 61 37.7
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 7.8e-06 55.1 68 36.8


User provided reference genes

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