Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1558.1 777 100.0
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1541.6 777 98.5
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1526.9 777 97.6
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1524.6 777 97.6
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1515.7 777 97.2
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1503.8 777 96.5
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1457.6 777 93.2
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1453.3 777 92.7
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1452.6 777 92.4
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1439.1 777 91.8
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1431.0 777 91.0
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1420.6 777 90.5
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1404.4 777 90.0
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1400.2 777 88.8
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1392.1 785 88.7
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1354.0 780 87.2
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1352.4 785 86.6
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1351.3 783 87.0
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1344.7 775 85.4
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1338.6 788 86.0
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1215.7 786 77.7
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1205.7 765 77.0
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1203.3 765 76.7
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1201.4 765 76.7
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1201.0 775 75.9
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1195.3 773 75.0
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1194.5 775 74.6
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1192.9 773 74.3
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1185.6 773 74.1
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1182.2 808 71.8
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1180.6 812 71.7
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1179.1 774 73.8
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1172.5 774 72.7
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1172.1 773 73.2
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1170.6 773 73.0
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1169.8 773 74.0
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1169.5 775 74.3
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1165.2 775 72.6
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1164.4 813 70.4
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1157.9 775 72.4
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1153.7 778 72.9
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1153.3 773 72.6
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1152.9 773 72.8
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1151.0 774 72.2
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1149.8 775 72.3
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1148.7 773 73.0
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1147.5 775 72.1
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1145.2 774 72.0
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1144.4 780 71.9
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1142.1 775 71.4
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1140.9 773 71.4
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1140.6 773 72.2
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1140.2 777 71.0
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1138.6 758 73.1
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1137.1 776 71.6
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1136.3 773 72.2
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1136.3 773 71.5
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1133.6 776 71.1
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1130.2 774 71.3
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1128.6 775 71.6
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1127.5 774 70.5
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1126.7 750 72.3
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1125.9 773 72.1
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1125.2 776 70.4
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1115.9 776 70.0
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1115.5 758 71.9
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1115.1 759 71.5
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1114.0 773 70.0
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1113.2 775 70.2
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1112.4 774 70.8
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1112.4 775 69.9
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1111.3 774 69.9
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1108.6 761 71.5
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1104.4 773 69.7
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1103.2 772 69.3
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1101.7 773 70.2
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1095.5 779 69.2
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1090.5 764 69.0
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1089.3 886 62.8
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1088.6 775 69.8
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1085.1 772 68.4
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1082.8 772 68.7
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 5.3e-312 1074.7 773 68.6
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 1.4e-307 1059.3 785 66.9
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 9.3e-307 1056.6 777 66.8
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 3.9e-305 1051.2 752 67.4
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 3.2e-299 1031.6 780 65.5
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 6.0e-298 1027.3 678 73.2
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 1.9e-296 1022.3 697 71.4
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 2.4e-294 1015.4 759 66.8
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 3.1e-294 1015.0 789 65.4
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 4.8e-287 991.1 691 70.3
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 3.1e-286 988.4 773 64.3
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 4.0e-286 988.0 779 64.8
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 5.8e-285 984.2 665 72.5
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 6.5e-284 980.7 734 67.6
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 3.5e-282 974.9 743 65.9
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 5.7e-280 967.6 746 63.9
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 2.2e-276 955.7 748 65.4
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 3.6e-274 948.3 770 61.9
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 1.5e-269 932.9 765 61.3
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 3.8e-268 928.3 772 58.7
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 1.6e-266 922.9 748 64.0
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 8.5e-252 874.0 633 68.2
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.9e-251 872.8 661 66.0
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 1.0e-249 867.1 704 61.8
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 6.3e-239 831.2 646 63.8
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 2.3e-236 822.8 643 63.8
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 3.3e-235 818.9 554 71.1
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 4.9e-231 805.1 561 68.3
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 3.2e-214 749.2 518 71.0
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 3.0e-212 742.7 770 52.3
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 4.0e-185 652.5 443 72.0
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 1.2e-173 614.4 446 67.7
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 7.0e-145 518.8 352 70.7
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 3.0e-140 503.4 372 67.5
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 5.0e-135 486.1 610 46.7
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 7.5e-115 419.1 274 73.4
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 9.8e-115 418.7 346 59.5
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 4.0e-100 370.2 249 70.7
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 2.4e-89 334.3 248 64.1
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.9e-78 298.1 358 48.0
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.4e-68 265.4 266 52.6
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 1.4e-68 265.4 260 58.5
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 3.1e-68 264.2 185 67.0
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 1.3e-63 248.8 240 53.8
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 2.3e-63 248.1 211 63.0
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.5e-62 245.4 252 52.0
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.5e-62 244.6 157 76.4
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 4.5e-59 233.8 139 80.6
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-56 225.7 139 77.7
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-46 192.2 210 51.4
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 4.1e-44 184.1 149 60.4
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 3.2e-41 174.5 149 60.4
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 9.4e-41 172.9 107 77.6
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 1.2e-40 172.6 119 68.9
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.6e-40 172.2 107 76.6
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.6e-40 172.2 107 78.5
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 7.9e-40 169.9 107 74.8
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 8.2e-37 159.8 118 63.6
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 2.0e-35 155.2 84 86.9
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.6e-35 154.8 91 76.9
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 5.9e-35 153.7 107 67.3
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 2.3e-31 141.7 93 72.0
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 3.0e-31 141.4 96 67.7
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 2.0e-30 138.7 86 73.3
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 2.6e-27 128.3 95 64.2
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.6e-27 128.3 81 75.3
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.8e-26 124.4 91 69.2
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.8e-26 124.4 91 69.2
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.5e-26 123.2 85 71.8
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.5e-26 123.2 91 68.1
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.1e-24 117.1 81 67.9
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.2e-22 112.8 124 50.0
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 5.3e-20 104.0 73 64.4
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.6e-19 102.4 216 35.2
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 1.6e-19 102.4 170 40.0
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 2.2e-18 98.6 165 38.2
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.1e-17 96.3 216 34.3
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 1.0e-15 89.7 77 57.1
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.7e-11 75.1 45 71.1
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.2e-10 72.0 53 67.9
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 6.5e-10 70.5 59 59.3
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 3.2e-09 68.2 172 32.0
BraA06t24594Z Brassica rapa HOM05D004228 ORTHO05D005137 4.2e-09 67.8 41 82.9
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 5.5e-09 67.4 37 70.3
AL8G21450 Arabidopsis lyrata HOM05D004228 ORTHO05D079388 2.0e-06 58.9 57 54.4
arahy.Tifrunner.gnm1.ann1.W3R70Z Arachis hypogaea HOM05D004228 ORTHO05D005137 2.0e-06 58.9 50 60.0
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 2.0e-06 58.9 154 29.9
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 5.7e-06 57.4 154 32.5
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 5.7e-06 57.4 44 59.1
THA.LOC104802955 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 9.8e-06 56.6 154 31.2


User provided reference genes

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