Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 1.5e-45 185.7 86 100.0
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 1.7e-44 182.2 86 97.7
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 4.7e-42 174.1 81 97.5
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 6.1e-42 173.7 87 94.3
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 3.3e-40 167.9 82 95.1
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 3.3e-40 167.9 82 95.1
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 3.3e-40 167.9 82 95.1
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 3.3e-40 167.9 82 95.1
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 3.3e-40 167.9 82 95.1
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 3.3e-40 167.9 82 95.1
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 3.3e-40 167.9 82 95.1
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 4.4e-40 167.5 86 93.0
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 7.4e-40 166.8 82 93.9
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 9.7e-40 166.4 82 93.9
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 1.3e-39 166.0 82 93.9
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 1.3e-39 166.0 82 93.9
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 2.2e-39 165.2 84 90.5
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 2.2e-39 165.2 82 92.7
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 2.2e-39 165.2 82 92.7
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 1.8e-38 162.2 82 91.5
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.8e-38 162.2 82 92.7
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 2.4e-38 161.8 82 92.7
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 3.1e-38 161.4 84 88.1
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 3.1e-38 161.4 85 89.4
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 7.0e-38 160.2 82 91.5
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 7.0e-38 160.2 82 91.5
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 7.0e-38 160.2 82 91.5
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 9.1e-38 159.8 86 88.4
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 4.5e-37 157.5 81 88.9
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 5.9e-37 157.1 82 89.0
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 7.7e-37 156.8 82 86.6
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 1.3e-36 156.0 81 88.9
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 1.7e-36 155.6 86 83.7
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 2.2e-36 155.2 86 83.7
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 2.9e-36 154.8 81 86.4
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 3.8e-36 154.5 81 87.7
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 5.0e-36 154.1 81 85.2
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 5.0e-36 154.1 86 80.2
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 5.0e-36 154.1 81 87.7
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 6.5e-36 153.7 81 86.4
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 8.5e-36 153.3 81 85.2
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 8.5e-36 153.3 81 86.4
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 1.9e-35 152.1 76 90.8
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 1.9e-35 152.1 76 88.2
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 1.9e-35 152.1 81 86.4
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 3.2e-35 151.4 86 81.4
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 4.2e-35 151.0 84 82.1
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 4.2e-35 151.0 86 82.6
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 5.5e-35 150.6 79 88.6
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 5.5e-35 150.6 81 86.4
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 7.2e-35 150.2 81 85.2
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 7.2e-35 150.2 81 85.2
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 7.2e-35 150.2 81 85.2
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 7.2e-35 150.2 80 87.5
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 7.2e-35 150.2 81 85.2
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 7.2e-35 150.2 81 81.5
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 9.4e-35 149.8 84 83.3
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 9.4e-35 149.8 85 81.2
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 1.2e-34 149.4 76 88.2
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 1.6e-34 149.1 78 82.1
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.6e-34 149.1 86 82.6
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 2.1e-34 148.7 77 85.7
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 2.1e-34 148.7 81 84.0
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 2.1e-34 148.7 74 89.2
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 76.7
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 2.7e-34 148.3 74 89.2
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 3.6e-34 147.9 74 87.8
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 3.6e-34 147.9 77 88.3
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 3.6e-34 147.9 78 85.9
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 4.7e-34 147.5 81 79.0
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 6.1e-34 147.1 85 80.0
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 6.1e-34 147.1 79 82.3
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 8.0e-34 146.7 74 87.8
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 8.0e-34 146.7 81 84.0
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 8.0e-34 146.7 81 81.5
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 8.0e-34 146.7 70 94.3
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 1.0e-33 146.4 85 78.8
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 1.4e-33 146.0 73 89.0
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 1.4e-33 146.0 74 87.8
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 1.4e-33 146.0 70 92.9
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.4e-33 146.0 70 92.9
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.4e-33 146.0 70 92.9
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.4e-33 146.0 70 92.9
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 1.4e-33 146.0 82 81.7
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.8e-33 145.6 81 82.7
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.8e-33 145.6 81 82.7
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.8e-33 145.6 81 82.7
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 1.8e-33 145.6 81 79.0
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 2.3e-33 145.2 83 79.5
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 2.3e-33 145.2 74 86.5
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.3e-33 145.2 81 80.2
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 2.3e-33 145.2 74 86.5
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 3.0e-33 144.8 77 83.1
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 5.2e-33 144.1 81 77.8
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 6.7e-33 143.7 74 85.1
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 6.7e-33 143.7 81 80.2
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 6.7e-33 143.7 81 80.2
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 6.7e-33 143.7 81 80.2
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 6.7e-33 143.7 81 81.5
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 6.7e-33 143.7 74 86.5
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 8.8e-33 143.3 74 85.1
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 8.8e-33 143.3 74 85.1
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 8.8e-33 143.3 74 85.1
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 8.8e-33 143.3 71 88.7
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 8.8e-33 143.3 69 92.8
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 1.5e-32 142.5 78 82.1
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 1.5e-32 142.5 78 82.1
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 1.5e-32 142.5 81 80.2
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 2.0e-32 142.1 86 75.6
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 4.4e-32 141.0 79 78.5
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 4.4e-32 141.0 74 83.8
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 7.4e-32 140.2 74 83.8
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 7.4e-32 140.2 84 76.2
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 7.4e-32 140.2 85 72.9
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 9.7e-32 139.8 102 67.6
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 9.7e-32 139.8 84 75.0
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.3e-31 139.4 74 83.8
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 2.2e-31 138.7 102 66.7
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 2.8e-31 138.3 65 93.8
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 4.1e-30 134.4 63 93.7
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 9.1e-30 133.3 61 95.1
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 1.6e-29 132.5 62 93.5
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 1.6e-29 132.5 62 93.5
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 4.5e-29 131.0 60 95.0
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 4.5e-29 131.0 79 78.5
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 4.5e-29 131.0 61 93.4
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 7.7e-29 130.2 57 98.2
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 2.2e-28 128.6 96 65.6
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 1.5e-27 125.9 70 78.6
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 3.0e-25 118.2 50 100.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 4.4e-24 114.4 50 98.0
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 9.7e-24 113.2 63 81.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 1.7e-23 112.5 50 94.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 6.3e-23 110.5 50 94.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 7.7e-21 103.6 49 87.8
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 2.2e-20 102.1 76 64.5
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 1.5e-19 99.4 81 56.8
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 2.5e-19 98.6 74 60.8
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 3.2e-19 98.2 64 64.1
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 8.0e-18 93.6 62 75.8
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 1.0e-17 93.2 81 51.9
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 2.3e-12 75.5 63 50.8
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 2.8e-07 58.5 29 86.2
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 4.1e-06 54.7 23 91.3


User provided reference genes

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