Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.7e-218 762.3 362 100.0
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 1.1e-217 759.6 362 99.7
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 5.6e-214 747.3 362 97.8
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 9.6e-214 746.5 362 97.8
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 9.6e-214 746.5 362 97.8
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 9.9e-211 736.5 362 95.9
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 1.4e-204 716.1 362 92.3
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 1.8e-204 715.7 362 92.0
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.4e-201 706.1 362 90.3
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 4.2e-201 704.5 362 90.3
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 9.3e-201 703.4 363 91.2
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 1.6e-200 702.6 362 90.3
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 2.2e-186 655.6 359 82.5
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.1e-158 563.5 363 70.8
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.4e-158 561.6 362 70.4
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 7.4e-158 560.8 363 71.3
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.3e-157 560.1 361 69.3
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 8.2e-157 557.4 362 69.9
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 7.0e-156 554.3 361 70.4
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 9.1e-156 553.9 362 69.3
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.2e-155 553.5 360 70.3
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 5.9e-155 551.2 361 70.6
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 5.9e-155 551.2 360 69.7
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 1.0e-154 550.4 361 70.9
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.7e-154 549.7 360 70.0
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 1.9e-153 546.2 346 71.4
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 3.2e-153 545.4 344 71.8
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.5e-153 544.7 360 69.7
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.5e-153 544.7 360 69.7
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 7.2e-153 544.3 358 67.6
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 9.4e-153 543.9 364 67.6
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.2e-152 543.5 346 71.4
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 1.6e-152 543.1 342 71.1
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 2.1e-152 542.7 359 68.0
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 2.1e-152 542.7 330 73.6
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.1e-152 542.7 360 67.2
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.7e-152 542.3 356 68.8
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 3.0e-151 538.9 346 70.2
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 5.2e-151 538.1 368 65.8
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 6.7e-151 537.7 364 66.8
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 4.4e-150 535.0 364 65.9
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 5.7e-150 534.6 358 65.4
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 1.3e-149 533.5 348 69.8
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.7e-149 533.1 364 66.5
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 2.8e-149 532.3 360 66.4
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.7e-149 531.9 338 70.4
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.7e-149 531.9 356 68.0
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.1e-148 530.4 363 65.6
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.4e-148 530.0 357 66.1
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 1.8e-148 529.6 360 66.7
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 4.1e-148 528.5 350 68.6
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 7.0e-148 527.7 363 66.4
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 9.1e-148 527.3 363 65.6
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 1.2e-147 526.9 362 65.7
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 2.0e-147 526.2 351 68.9
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 2.7e-147 525.8 364 65.9
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 7.7e-147 524.2 361 64.3
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 5.0e-146 521.5 358 64.0
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 1.9e-145 519.6 354 68.4
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 4.2e-145 518.5 361 64.0
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 4.7e-144 515.0 312 74.4
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 1.0e-143 513.8 354 67.5
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.0e-143 513.8 356 64.0
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 6.8e-143 511.1 360 64.7
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 8.8e-143 510.8 347 64.8
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.0e-142 509.6 313 70.0
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 3.4e-142 508.8 363 64.5
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 3.4e-142 508.8 355 63.9
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 4.4e-142 508.4 360 64.7
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 7.5e-142 507.7 349 64.8
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 9.8e-142 507.3 361 63.4
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.7e-141 506.5 354 63.8
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.4e-140 503.4 358 63.4
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.8e-140 503.1 319 69.9
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.8e-140 503.1 320 69.7
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 3.1e-140 502.3 319 69.9
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 3.1e-140 502.3 267 83.5
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 4.1e-140 501.9 319 69.9
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 9.1e-140 500.7 347 63.4
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.9e-139 498.0 343 65.3
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 5.9e-139 498.0 360 64.2
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 7.7e-139 497.7 363 62.5
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 8.8e-135 484.2 357 61.6
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 2.6e-134 482.6 446 51.3
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 9.8e-134 480.7 342 63.7
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.7e-133 479.9 354 62.1
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.2e-133 479.6 359 60.7
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 2.8e-133 479.2 344 62.8
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 3.7e-133 478.8 354 61.9
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 4.9e-133 478.4 344 62.2
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.1e-132 477.2 362 61.0
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.4e-132 476.1 340 62.4
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 3.1e-132 475.7 361 62.0
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 3.1e-132 475.7 354 61.3
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 7.0e-132 474.6 358 63.4
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 9.2e-132 474.2 358 63.1
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.6e-131 473.4 451 51.0
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 4.5e-131 471.9 355 63.4
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 4.5e-131 471.9 361 59.6
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.0e-130 470.7 352 63.6
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 2.9e-130 469.2 354 60.2
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 8.6e-130 467.6 364 62.1
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.9e-129 466.5 394 56.6
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 6.1e-128 461.5 357 58.5
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 9.8e-126 454.1 363 56.5
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 1.7e-122 443.4 332 59.6
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 2.5e-121 439.5 276 70.3
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 5.6e-121 438.3 276 69.9
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 9.5e-121 437.6 362 55.2
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 1.6e-120 436.8 360 55.6
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 4.7e-120 435.3 276 69.6
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 5.4e-116 421.8 359 56.0
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 2.0e-115 419.9 313 60.1
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 7.3e-113 411.4 270 69.3
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 8.3e-109 397.9 262 65.6
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.6e-107 393.7 338 54.4
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 5.2e-103 378.6 289 58.5
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 6.4e-101 371.7 229 73.4
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.3e-98 364.0 251 67.7
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.1e-97 360.9 320 55.0
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 4.4e-94 349.0 357 47.1
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 8.4e-93 344.7 200 76.5
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 6.6e-90 335.1 229 64.2
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 2.4e-87 326.6 264 58.3
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 4.5e-86 322.4 216 66.7
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.8e-85 319.3 330 48.2
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 4.9e-85 318.9 231 60.2
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.2e-83 314.3 362 43.6
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.5e-81 306.6 307 50.8
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 7.4e-81 305.1 362 43.4
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 5.8e-78 295.4 309 47.9
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.3e-77 294.3 184 74.5
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.7e-77 293.9 202 67.8
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.4e-76 290.0 205 67.3
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 3.9e-74 282.7 192 66.1
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 7.9e-59 231.9 240 48.3
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 7.4e-57 225.3 155 68.4
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.8e-55 220.7 158 61.4
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 7.7e-38 162.2 143 51.7
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 2.1e-35 154.1 217 39.6
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.2e-30 138.3 108 59.3
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.3e-29 134.8 111 61.3
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.6e-25 120.6 98 58.2
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.0e-22 110.9 102 48.0
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 1.2e-19 101.7 99 47.5
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 7.8e-14 82.4 142 33.1
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 8.3e-08 62.4 130 31.5


User provided reference genes

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