Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 0.0e+00 1173.7 711 100.0
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 0.0e+00 1137.5 724 96.8
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 4.5e-308 1060.8 708 91.4
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.7e-307 1058.9 719 91.8
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 9.1e-293 1010.0 708 89.5
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.6e-276 956.1 720 81.9
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 5.9e-276 954.1 720 81.9
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 9.2e-269 930.2 723 83.1
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 1.2e-268 929.9 723 82.7
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 5.6e-266 921.0 723 82.4
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 2.8e-265 918.7 723 82.3
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 8.0e-265 917.1 723 82.3
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 4.6e-260 901.4 722 80.6
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 4.1e-253 878.2 717 76.4
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 3.7e-246 855.1 721 75.5
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 7.3e-234 814.3 650 79.2
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 1.3e-230 803.5 731 69.4
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 7.1e-205 718.0 732 66.8
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 5.1e-203 711.8 721 66.4
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 2.2e-193 679.9 730 64.9
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 7.9e-188 661.4 730 63.3
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 3.0e-179 632.9 710 63.4
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 1.6e-172 610.5 736 60.7
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 1.0e-171 607.8 749 59.0
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 7.0e-168 595.1 778 50.1
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 8.5e-166 588.2 790 48.4
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 1.1e-165 587.8 772 50.0
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 4.0e-163 579.3 787 52.0
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 6.8e-163 578.6 772 49.9
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.2e-162 577.8 747 49.1
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 8.3e-161 571.6 747 50.9
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 1.6e-156 557.4 721 50.1
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 8.0e-156 555.1 704 54.0
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 1.4e-155 554.3 729 48.4
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.4e-155 554.3 699 53.4
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 4.0e-155 552.7 799 46.1
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 5.2e-155 552.4 796 48.5
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 8.9e-155 551.6 735 55.5
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 9.8e-154 548.1 748 49.9
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 9.8e-154 548.1 699 50.1
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 2.2e-153 547.0 787 47.6
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 4.9e-153 545.8 684 50.1
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 1.4e-152 544.3 701 49.8
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 1.8e-152 543.9 775 48.1
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 5.4e-152 542.3 685 49.9
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 9.2e-152 541.6 796 46.4
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 5.0e-150 535.8 701 50.1
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 8.6e-150 535.0 700 49.7
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 8.6e-150 535.0 703 51.5
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.3e-149 532.7 787 48.0
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 2.8e-148 530.0 705 49.4
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 4.7e-148 529.3 698 51.6
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 1.0e-147 528.1 777 49.4
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.8e-147 527.3 772 50.1
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 8.9e-147 525.0 772 50.1
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.9e-145 519.2 772 49.1
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 4.9e-145 519.2 748 46.7
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.1e-144 518.1 748 47.2
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 4.1e-144 516.2 689 55.9
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 7.0e-144 515.4 786 48.2
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 7.0e-144 515.4 692 48.8
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.2e-143 514.6 769 50.1
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 1.6e-143 514.2 748 49.6
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 3.5e-143 513.1 761 45.6
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.6e-143 512.7 796 49.2
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 7.8e-143 511.9 702 47.4
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 1.3e-142 511.1 741 47.0
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 2.5e-141 506.9 682 48.4
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 2.5e-141 506.9 753 45.7
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 3.3e-141 506.5 743 49.0
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 2.1e-140 503.8 692 48.8
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 3.6e-140 503.1 710 48.5
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 8.1e-140 501.9 792 45.7
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 8.1e-140 501.9 698 52.3
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.8e-139 500.7 711 46.3
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 2.3e-139 500.4 694 48.3
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-138 497.7 704 47.2
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 4.4e-138 496.1 672 47.5
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 4.4e-138 496.1 713 47.4
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 4.9e-137 492.7 681 53.7
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 1.4e-136 491.1 457 73.1
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 1.9e-136 490.7 706 53.1
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 4.1e-136 489.6 703 46.8
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 4.6e-135 486.1 703 46.7
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 2.3e-134 483.8 690 50.3
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 4.3e-133 479.6 700 46.6
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 7.3e-133 478.8 777 43.4
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 4.7e-132 476.1 691 45.3
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 1.8e-131 474.2 693 46.8
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 1.8e-131 474.2 697 46.8
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 4.0e-131 473.0 762 47.6
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 4.0e-131 473.0 697 46.6
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 5.2e-131 472.6 703 49.4
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 5.2e-131 472.6 850 41.1
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 8.9e-131 471.9 741 43.6
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.3e-129 468.0 797 42.9
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 9.2e-128 461.8 713 44.9
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 3.0e-126 456.8 778 48.5
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 5.1e-126 456.1 791 44.6
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 4.3e-125 453.0 705 44.3
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 9.6e-125 451.8 683 47.9
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.6e-124 451.1 689 45.3
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 2.1e-124 450.7 679 44.6
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 2.4e-123 447.2 739 42.6
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 2.6e-122 443.7 674 45.4
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 5.8e-122 442.6 752 47.9
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 2.2e-121 440.7 749 40.7
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 6.4e-121 439.1 789 40.6
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 8.4e-121 438.7 759 46.1
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 1.1e-120 438.3 721 42.4
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 2.4e-120 437.2 498 52.6
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 4.2e-120 436.4 769 45.1
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.7e-118 431.0 692 50.1
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 3.9e-118 429.9 704 43.9
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 5.1e-118 429.5 707 43.7
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.3e-117 426.4 607 50.4
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 6.2e-116 422.5 695 48.2
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 1.2e-114 418.3 747 40.2
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 5.4e-112 409.5 627 44.2
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 5.4e-112 409.5 678 47.9
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 3.5e-111 406.8 508 50.6
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 1.1e-109 401.7 725 42.5
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 7.4e-109 399.1 612 46.6
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 8.1e-108 395.6 612 45.9
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 4.0e-107 393.3 628 47.1
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 7.1e-104 382.5 731 43.4
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 3.8e-97 360.1 753 38.4
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 5.5e-96 356.3 787 36.5
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 9.3e-96 355.5 702 39.3
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.3e-92 345.1 681 38.0
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 6.3e-92 342.8 250 81.2
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 1.4e-91 341.7 676 37.7
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 2.9e-89 334.0 831 38.1
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 2.3e-86 324.3 271 67.2
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 5.1e-86 323.2 285 69.5
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 2.6e-82 310.8 703 36.3
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 1.6e-79 301.6 331 55.3
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 2.0e-74 284.6 271 57.9
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 6.1e-71 273.1 723 33.6
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 3.1e-67 260.8 590 35.8
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 8.5e-57 226.1 259 52.5
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 3.0e-54 217.6 282 50.7
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 4.8e-52 210.3 345 41.2
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 2.4e-51 208.0 379 40.6
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.4e-46 192.2 674 32.3
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 3.7e-44 184.1 220 48.2
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 3.5e-42 177.6 222 55.0
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 3.4e-37 161.0 186 54.8
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 7.0e-35 153.3 289 44.6
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 5.9e-34 150.2 396 34.8
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 5.2e-30 137.1 89 83.1
BcaC07g40654 Brassica carinata HOM05D003721 ORTHO05D004303 2.9e-28 131.3 412 47.1
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 9.2e-27 126.3 166 50.0
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 1.6e-26 125.6 182 49.5
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-24 119.0 105 58.1
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 4.4e-21 107.5 143 46.9
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 3.7e-20 104.4 108 57.4
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.4e-19 102.4 400 29.0
AL5G44110 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.0e-17 96.3 73 72.6
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 1.2e-15 89.4 104 46.2
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 8.1e-15 86.7 185 32.4
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.1e-14 86.3 172 40.1
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.3e-14 85.1 62 71.0
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 5.2e-14 84.0 80 56.2
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 6.8e-14 83.6 109 48.6
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 2.4e-11 75.1 204 31.4
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.0e-09 69.7 85 51.8
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.7e-09 68.9 69 55.1
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.7e-09 68.9 400 24.8
CBR_g40298 Chara braunii HOM05D003721 ORTHO05D004303 1.4e-06 59.3 143 32.2


User provided reference genes

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