Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 1.2e-302 1042.3 508 100.0
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 4.7e-299 1030.4 508 98.6
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 1.7e-293 1011.9 508 96.5
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 3.2e-292 1007.7 508 96.5
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 4.2e-292 1007.3 508 96.7
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 3.1e-279 964.5 516 91.7
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 8.9e-266 919.8 526 87.5
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 2.9e-256 888.3 526 84.0
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 3.7e-256 887.9 513 85.4
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 2.3e-253 878.6 526 82.9
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 1.5e-252 875.9 523 83.6
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 3.3e-244 848.2 466 88.2
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 1.2e-235 819.7 525 77.0
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 1.1e-226 790.0 482 78.4
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 9.3e-223 776.9 491 75.8
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 1.1e-218 763.5 471 76.6
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 1.4e-218 763.1 489 74.2
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 3.1e-218 761.9 514 72.2
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 5.3e-218 761.1 486 74.7
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 1.7e-216 756.1 508 70.9
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 1.7e-216 756.1 511 73.4
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 2.2e-216 755.7 490 73.9
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 6.4e-216 754.2 506 71.1
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 8.4e-216 753.8 482 77.8
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 2.4e-215 752.3 493 72.8
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 4.2e-215 751.5 501 72.7
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 7.1e-215 750.7 521 70.4
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 9.3e-215 750.4 489 73.6
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 1.2e-214 750.0 518 70.8
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.6e-214 749.6 479 73.9
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 2.1e-214 749.2 478 74.7
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 2.7e-214 748.8 515 71.8
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 2.7e-214 748.8 478 74.3
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 3.5e-214 748.4 486 73.0
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 6.0e-214 747.7 478 74.1
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 6.0e-214 747.7 471 76.2
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 1.0e-213 746.9 455 76.9
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 1.3e-213 746.5 518 70.1
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 3.0e-213 745.3 458 76.6
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 6.7e-213 744.2 519 70.1
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 4.3e-212 741.5 512 70.3
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 5.6e-212 741.1 482 72.8
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 7.4e-212 740.7 515 71.5
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 1.6e-211 739.6 496 71.0
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 2.1e-211 739.2 524 68.7
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 2.8e-211 738.8 519 71.1
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 6.2e-211 737.6 486 72.6
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 1.4e-210 736.5 527 67.6
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 1.8e-210 736.1 466 74.0
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.8e-210 736.1 477 73.8
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 1.8e-210 736.1 517 70.6
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 1.8e-210 736.1 517 70.8
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 3.1e-210 735.3 464 75.4
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 4.0e-210 734.9 474 75.9
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 5.3e-210 734.6 475 73.9
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 5.3e-210 734.6 489 73.6
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 9.0e-210 733.8 486 72.0
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 9.0e-210 733.8 489 72.0
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 2.0e-209 732.6 455 75.4
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 7.6e-209 730.7 482 72.8
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 9.9e-209 730.3 507 69.6
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.3e-208 729.9 501 69.9
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 2.9e-208 728.8 491 70.7
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 6.4e-208 727.6 468 73.9
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 3.2e-207 725.3 482 72.0
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 7.1e-207 724.2 461 74.4
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 2.1e-206 722.6 484 72.3
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 2.7e-206 722.2 484 72.1
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 2.7e-206 722.2 536 67.9
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 3.5e-206 721.8 514 68.7
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 4.6e-206 721.5 473 73.2
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 6.7e-205 717.6 455 73.8
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 1.9e-204 716.1 453 74.4
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 2.5e-204 715.7 475 71.4
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 7.4e-204 714.1 448 74.8
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 1.4e-202 709.9 464 71.6
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 5.3e-202 708.0 511 66.9
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 6.9e-202 707.6 452 72.1
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 6.9e-202 707.6 503 68.0
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 2.0e-201 706.1 499 68.9
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 7.6e-201 704.1 464 72.2
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 1.0e-200 703.7 452 71.9
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 1.6e-198 696.4 453 72.4
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 1.6e-198 696.4 461 69.6
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 3.5e-198 695.3 494 68.8
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.0e-197 693.7 458 72.9
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 1.8e-197 693.0 474 67.9
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 1.8e-197 693.0 508 66.9
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 2.8e-195 685.6 451 71.8
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 2.8e-195 685.6 454 70.3
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 8.2e-187 657.5 499 63.9
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 6.5e-184 647.9 457 67.6
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 1.2e-174 617.1 447 62.6
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 1.6e-174 616.7 525 60.8
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 1.8e-173 613.2 475 61.3
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 5.7e-172 608.2 454 66.3
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 1.8e-170 603.2 445 63.4
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 4.1e-170 602.1 495 60.0
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 1.3e-168 597.0 474 60.8
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 1.1e-167 594.0 366 77.0
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.8e-162 576.6 393 70.7
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 4.5e-161 572.0 487 59.8
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 6.1e-158 561.6 376 72.3
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 7.5e-132 474.9 324 69.8
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 3.9e-128 462.6 452 51.3
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 5.6e-127 458.8 488 52.9
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 6.8e-117 425.2 300 70.3
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 5.3e-109 399.1 476 46.2
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 9.0e-109 398.3 282 66.0
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 6.6e-104 382.1 480 45.4
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 1.4e-77 294.7 449 38.8
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 8.3e-38 162.5 226 39.4
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 5.4e-37 159.8 100 71.0
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 3.0e-32 144.1 96 70.8
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 3.0e-32 144.1 96 70.8
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 3.0e-32 144.1 96 70.8
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 3.0e-32 144.1 96 70.8
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 2.0e-31 141.4 72 88.9
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 1.2e-23 115.5 280 32.5
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 1.7e-22 111.7 57 89.5
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 4.9e-14 83.6 43 93.0
BcaC08g45232 Brassica carinata HOM05D000289 ORTHO05D000208 2.3e-08 64.7 42 69.0
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 1.5e-07 62.0 40 70.0
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 5.8e-07 60.1 65 53.8
Actinidia17930 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.7e-06 58.5 41 70.7


User provided reference genes

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