Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 0.0e+00 1241.5 606 100.0
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 0.0e+00 1149.8 610 94.9
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 0.0e+00 1109.7 619 91.1
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 0.0e+00 1107.8 619 91.0
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 0.0e+00 1107.8 619 91.0
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 6.2e-274 947.2 644 76.9
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 7.5e-272 940.3 644 76.4
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 8.3e-271 936.8 650 76.0
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 8.3e-271 936.8 650 76.0
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.1e-270 936.4 650 75.7
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 3.2e-270 934.9 650 75.8
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 1.6e-266 922.5 660 73.8
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 1.2e-264 916.4 662 73.1
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 2.4e-257 892.1 659 72.4
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.0e-252 876.7 656 70.0
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 1.8e-244 849.4 652 69.5
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 3.0e-244 848.6 661 69.9
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 3.3e-243 845.1 661 69.0
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 3.7e-242 841.6 668 69.3
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 2.7e-237 825.5 656 67.2
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 4.6e-229 798.1 657 65.3
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 1.5e-227 793.1 662 64.7
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.8e-226 788.1 655 64.4
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.1e-225 786.9 646 64.7
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.4e-225 785.8 655 64.4
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 2.4e-225 785.8 656 64.5
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.0e-225 783.9 649 64.4
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.5e-224 783.1 660 64.1
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 2.0e-224 782.7 652 63.5
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 2.0e-224 782.7 655 64.3
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.6e-224 782.3 655 64.3
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.0e-223 780.4 648 64.0
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 1.4e-222 776.5 660 63.9
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.9e-222 776.2 664 62.7
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 4.6e-221 771.5 657 62.7
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.1e-219 766.9 667 61.9
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.5e-219 766.5 660 63.0
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 4.3e-219 765.0 654 63.5
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 5.7e-219 764.6 675 62.5
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 9.7e-219 763.8 656 63.9
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 1.3e-218 763.5 657 62.4
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.7e-218 761.9 657 62.3
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 8.2e-218 760.8 657 62.3
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 2.4e-217 759.2 657 63.0
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.0e-216 756.1 656 61.7
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 2.6e-216 755.7 662 61.8
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.6e-216 755.7 657 61.9
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.6e-216 755.7 657 61.8
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 5.0e-215 751.5 654 61.3
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 5.0e-215 751.5 654 61.3
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-213 746.9 656 61.7
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 6.1e-213 744.6 654 61.3
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 3.3e-211 738.8 640 62.3
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 5.7e-211 738.0 636 62.1
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 4.8e-210 734.9 554 68.1
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.1e-209 733.8 668 59.9
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 3.1e-209 732.3 658 60.9
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 9.1e-209 730.7 664 61.4
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 9.1e-209 730.7 639 63.1
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 3.8e-207 725.3 657 60.1
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 8.5e-207 724.2 567 66.3
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 9.4e-206 720.7 645 61.4
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 8.8e-204 714.1 666 58.6
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 8.8e-204 714.1 666 58.6
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 1.1e-203 713.8 619 61.6
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 2.6e-203 712.6 652 60.7
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 5.7e-203 711.4 655 60.5
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 2.2e-202 709.5 669 60.4
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 3.7e-202 708.8 669 60.4
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 5.3e-201 704.9 612 61.8
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 7.7e-200 701.0 665 60.0
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 2.9e-199 699.1 565 63.5
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.2e-198 695.7 557 64.3
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 3.2e-198 695.7 660 59.1
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 4.2e-198 695.3 636 60.2
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 5.5e-198 694.9 653 60.6
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 9.4e-198 694.1 545 66.6
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 4.7e-197 691.8 566 64.7
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 3.0e-196 689.1 662 59.5
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 4.0e-196 688.7 664 59.8
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.0e-195 686.4 677 57.8
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 5.7e-195 684.9 653 60.2
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.7e-194 683.3 616 61.5
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 2.2e-194 682.9 611 61.5
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 6.3e-194 681.4 536 66.0
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 8.3e-194 681.0 558 63.4
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 9.1e-193 677.6 688 56.5
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 5.0e-191 671.8 571 61.5
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.1e-190 670.6 652 57.2
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.5e-190 670.2 612 60.6
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.2e-189 667.2 680 56.5
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 3.6e-189 665.6 672 54.9
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 6.1e-189 664.8 656 57.0
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.3e-188 662.9 639 56.5
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 4.0e-188 662.1 654 56.1
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 6.8e-188 661.4 540 63.7
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 5.7e-187 658.3 571 60.9
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.3e-186 657.1 674 55.2
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.4e-185 653.7 597 59.5
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 1.2e-184 650.6 540 63.3
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 1.6e-184 650.2 540 63.5
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 7.7e-184 647.9 646 57.0
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 7.7e-184 647.9 631 55.6
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 6.6e-183 644.8 632 57.6
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 8.6e-183 644.4 595 59.3
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 6.1e-181 638.3 672 54.8
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 1.0e-180 637.5 557 59.4
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 2.3e-180 636.3 673 54.5
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.2e-179 634.0 681 53.6
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.4e-177 627.1 543 61.3
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 7.0e-177 624.8 614 56.4
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.6e-176 623.6 518 63.1
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 1.0e-175 620.9 640 54.5
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.7e-175 620.2 536 62.7
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 2.3e-167 593.2 649 53.3
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 4.9e-162 575.5 658 50.6
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 6.0e-160 568.5 550 55.6
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 3.0e-159 566.2 626 53.8
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 3.0e-159 566.2 623 53.0
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 5.6e-158 562.0 678 50.6
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 6.8e-156 555.1 585 53.2
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 4.4e-147 525.8 654 48.3
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.6e-144 517.3 519 57.2
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 2.0e-139 500.4 563 51.7
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 9.9e-139 498.0 422 61.8
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.1e-137 494.6 487 57.5
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 2.1e-136 490.3 548 49.5
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 9.6e-134 481.5 417 60.0
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 9.0e-124 448.4 335 73.1
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.8e-116 424.1 385 56.1
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.0e-114 418.3 383 55.9
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 3.1e-108 396.7 339 61.7
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 7.7e-75 285.8 289 54.0
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 7.2e-73 279.3 415 45.5
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 2.2e-53 214.5 622 29.9
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 7.0e-52 209.5 166 67.5
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 9.2e-52 209.1 624 29.8
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 1.7e-37 161.8 155 56.1
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 3.2e-36 157.5 92 83.7
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 3.5e-35 154.1 196 54.1
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 4.7e-32 143.7 192 44.3
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 1.7e-29 135.2 300 30.7
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 4.9e-29 133.7 76 82.9
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 1.6e-19 102.1 106 50.9
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 1.9e-17 95.1 127 47.2
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 1.1e-15 89.4 187 33.2
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 1.3e-10 72.4 38 86.8
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 4.3e-09 67.4 57 63.2
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 1.4e-07 62.4 151 35.8


User provided reference genes

Program Settings