Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 3.4e-165 585.1 339 100.0
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 6.3e-143 511.1 319 94.0
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 7.5e-136 487.6 319 90.9
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 3.5e-133 478.8 323 89.2
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 8.0e-130 467.6 321 87.5
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 4.0e-129 465.3 312 90.4
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 1.2e-128 463.8 308 89.6
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 2.6e-128 462.6 312 89.4
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 2.2e-127 459.5 309 90.6
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 1.4e-126 456.8 313 90.4
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 1.4e-126 456.8 313 90.4
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.6e-125 453.4 314 88.5
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 2.0e-125 453.0 312 88.8
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 8.6e-124 447.6 312 86.2
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 4.3e-123 445.3 291 89.7
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 8.9e-121 437.6 305 84.9
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 4.9e-119 431.8 306 84.3
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 3.5e-117 425.6 312 81.7
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 3.6e-114 415.6 312 81.4
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 5.1e-108 395.2 299 80.9
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 2.1e-106 389.8 294 77.9
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.1e-106 389.8 301 70.8
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 6.2e-106 388.3 301 70.8
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 8.9e-105 384.4 301 70.1
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 4.4e-104 382.1 308 68.5
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 5.8e-104 381.7 294 79.9
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.7e-103 380.2 309 73.5
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.2e-103 379.8 294 71.1
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 8.4e-103 377.9 294 70.4
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 1.1e-102 377.5 294 71.1
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 1.1e-102 377.5 294 71.1
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 3.2e-102 375.9 310 71.3
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 4.2e-102 375.6 293 70.0
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 4.2e-102 375.6 293 75.8
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 5.4e-102 375.2 312 72.8
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 2.1e-101 373.2 296 68.9
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.1e-101 373.2 296 69.9
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 1.0e-100 370.9 294 68.7
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 1.0e-100 370.9 294 76.5
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 5.1e-100 368.6 296 67.2
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 5.1e-100 368.6 293 76.1
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 1.1e-99 367.5 291 68.7
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.5e-99 367.1 294 74.1
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 1.9e-99 366.7 296 74.7
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.5e-99 366.3 295 75.6
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.3e-99 365.9 296 76.0
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 5.6e-99 365.2 296 68.2
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 5.6e-99 365.2 294 68.7
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 5.6e-99 365.2 296 73.6
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 7.3e-99 364.8 296 67.2
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 9.6e-99 364.4 294 69.4
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 1.2e-98 364.0 296 67.2
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 1.2e-98 364.0 294 69.4
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.1e-98 363.2 293 67.9
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 2.1e-98 363.2 296 72.3
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 3.6e-98 362.5 296 66.2
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.7e-98 362.1 294 75.9
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 6.2e-98 361.7 294 76.9
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 6.2e-98 361.7 295 68.8
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 6.2e-98 361.7 294 76.2
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 8.1e-98 361.3 294 73.8
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.1e-97 360.9 293 67.6
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.4e-97 360.5 294 67.3
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 1.4e-97 360.5 293 68.3
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 1.8e-97 360.1 296 68.9
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 1.8e-97 360.1 296 68.6
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 2.4e-97 359.8 296 73.6
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 3.1e-97 359.4 292 68.5
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 3.1e-97 359.4 293 67.9
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.0e-97 359.0 301 75.1
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.0e-97 359.0 296 68.6
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 6.9e-97 358.2 296 68.2
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 6.9e-97 358.2 301 74.4
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 6.9e-97 358.2 296 65.5
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 6.9e-97 358.2 294 67.0
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.2e-96 357.5 296 68.2
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 1.5e-96 357.1 296 68.2
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.0e-96 356.7 292 67.8
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 2.0e-96 356.7 292 72.9
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 2.6e-96 356.3 292 72.3
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 3.4e-96 355.9 294 67.7
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 3.4e-96 355.9 296 67.9
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 4.4e-96 355.5 296 68.2
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 7.6e-96 354.8 293 67.9
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 9.9e-96 354.4 292 67.8
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.7e-95 353.6 293 71.3
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 2.9e-95 352.8 293 75.4
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 4.9e-95 352.1 294 73.8
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 8.4e-95 351.3 296 68.2
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 1.4e-94 350.5 306 64.7
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 1.9e-94 350.1 293 75.8
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 3.2e-94 349.4 293 65.5
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 7.1e-94 348.2 294 71.4
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 2.1e-93 346.7 294 65.3
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 6.0e-93 345.1 297 64.0
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 7.8e-93 344.7 293 70.6
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 7.8e-93 344.7 293 66.2
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 1.3e-92 344.0 303 66.7
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.7e-92 343.6 294 65.3
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.7e-92 343.6 295 67.5
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 5.1e-92 342.0 293 69.3
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 5.1e-92 342.0 293 69.6
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 1.1e-91 340.9 293 70.6
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 1.5e-91 340.5 297 64.6
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 3.3e-91 339.3 293 69.3
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 6.2e-90 335.1 292 67.5
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 6.2e-90 335.1 312 61.2
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 5.3e-89 332.0 296 63.5
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 1.9e-86 323.6 294 69.0
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.6e-85 318.9 308 60.7
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.0e-84 317.8 290 62.4
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.3e-82 310.8 312 58.3
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 1.1e-78 297.7 290 59.3
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 2.5e-75 286.6 209 84.7
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 5.3e-73 278.9 235 64.7
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 3.8e-71 272.7 215 69.8
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.9e-70 270.4 292 54.8
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.2e-69 267.7 291 57.7
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 3.5e-69 266.2 297 54.2
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.5e-67 260.8 235 61.7
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.4e-65 253.4 296 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.0e-64 250.4 296 58.8
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 8.5e-63 245.0 323 54.2
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 2.6e-56 223.4 224 59.8
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 3.8e-55 219.5 237 61.2
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 8.5e-55 218.4 300 56.0
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 1.5e-51 207.6 286 51.7
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 9.4e-46 188.3 314 43.3
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 4.4e-43 179.5 260 46.2
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.0e-39 168.3 191 54.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 3.2e-38 163.3 298 44.6
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 1.2e-35 154.8 181 57.5
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 1.2e-35 154.8 181 57.5
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 1.2e-35 154.8 181 57.5
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.2e-35 154.8 292 37.3
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.8e-33 147.5 320 36.9
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.7e-32 143.7 128 66.4
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.2e-29 134.8 119 59.7
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 4.7e-29 132.9 80 82.5
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 4.7e-29 132.9 119 60.5
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 9.8e-27 125.2 151 43.0
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.4e-25 121.3 83 74.7
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.3e-23 114.8 78 78.2
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 6.6e-23 112.5 66 86.4
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 1.1e-22 111.7 127 51.2
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 3.0e-20 103.6 227 33.5
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 3.0e-20 103.6 67 76.1
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 3.9e-15 86.7 71 62.0
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 1.5e-14 84.7 80 58.8
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.5e-14 84.0 177 39.0
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 5.6e-14 82.8 71 59.2
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 9.5e-14 82.0 65 70.8
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 2.2e-10 70.9 41 80.5
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 6.4e-10 69.3 78 47.4
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 1.9e-09 67.8 103 40.8
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 1.0e-07 62.0 40 72.5
AT3G43260 Arabidopsis thaliana HOM05D046300 ORTHO05D038666 8.6e-07 58.9 60 46.7
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.9e-06 57.8 95 37.9


User provided reference genes

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