Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p23450 Brassica napus HOM05D002914 ORTHO05D003196 3.6e-62 241.5 130 100.0
BcaC08g44849 Brassica carinata HOM05D002914 ORTHO05D003196 4.7e-54 214.5 126 90.5
BcaB02g07599 Brassica carinata HOM05D002914 ORTHO05D003196 5.0e-48 194.5 126 79.4
Sp5g05100 Schrenkiella parvula HOM05D002914 ORTHO05D003196 3.2e-42 175.3 128 69.5
Thhalv10006376m.g Eutrema salsugineum HOM05D002914 ORTHO05D003196 9.2e-42 173.7 100 83.0
AL5G39080 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 2.0e-41 172.6 98 83.7
AT3G57500 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 3.5e-41 171.8 126 79.4
A09p50360 Brassica napus HOM05D002914 ORTHO05D003196 4.6e-41 171.4 98 82.7
BraA09t40488Z Brassica rapa HOM05D002914 ORTHO05D003196 4.6e-41 171.4 98 82.7
BcaB02g08314 Brassica carinata HOM05D002914 ORTHO05D003196 6.0e-41 171.0 98 82.7
C08p33030 Brassica napus HOM05D002914 ORTHO05D003196 6.0e-41 171.0 98 81.6
BolC8t50903H Brassica oleracea HOM05D002914 ORTHO05D003196 6.0e-41 171.0 98 81.6
Carub.0005s2434 Capsella rubella HOM05D002914 ORTHO05D003196 2.3e-40 169.1 101 81.2
A04p03090 Brassica napus HOM05D002914 ORTHO05D003196 7.3e-39 164.1 98 79.6
BraA04t16032Z Brassica rapa HOM05D002914 ORTHO05D003196 7.3e-39 164.1 98 79.6
BcaC07g40375 Brassica carinata HOM05D002914 ORTHO05D003196 1.8e-37 159.5 130 73.8
CARHR167710 Cardamine hirsuta HOM05D002914 ORTHO05D003196 2.3e-37 159.1 95 81.1
BcaC02g09941 Brassica carinata HOM05D002914 ORTHO05D003196 1.3e-35 153.3 98 75.5
C04p34950 Brassica napus HOM05D002914 ORTHO05D003196 1.1e-34 150.2 98 74.5
BolC4t25049H Brassica oleracea HOM05D002914 ORTHO05D003196 1.1e-34 150.2 98 74.5
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 1.8e-21 106.3 99 59.6
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 1.5e-20 103.2 76 63.2
Ah.04g151670 Amaranthus hybridus HOM05D002914 ORTHO05D003196 2.6e-20 102.4 78 60.3
Cfa016832 Carpinus fangiana HOM05D002914 ORTHO05D003196 3.4e-20 102.1 78 61.5
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 4.4e-20 101.7 78 61.5
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 4.4e-20 101.7 93 73.1
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 4.4e-20 101.7 102 55.9
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 5.8e-20 101.3 78 64.1
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 1.3e-19 100.1 76 61.8
Aqoxy2G00187 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.7e-19 99.8 93 54.8
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 3.8e-19 98.6 97 55.7
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 4.9e-19 98.2 76 64.5
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 4.9e-19 98.2 72 66.7
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.1e-18 97.1 101 49.5
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.1e-18 97.1 76 59.2
Oeu000823.1 Olea europaea HOM05D002914 ORTHO05D003196 1.1e-18 97.1 67 65.7
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 1.1e-18 97.1 114 50.0
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 1.4e-18 96.7 101 50.5
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.2e-18 95.5 102 50.0
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 3.2e-18 95.5 102 50.0
Cpa.g.sc92.38 Carica papaya HOM05D002914 ORTHO05D003196 4.2e-18 95.1 68 64.7
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.2e-18 95.1 95 54.7
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 5.4e-18 94.7 58 74.1
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 7.1e-18 94.4 67 70.1
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 7.1e-18 94.4 92 55.4
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 7.1e-18 94.4 67 67.2
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 9.2e-18 94.0 77 63.6
THA.LOC104802149 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 1.2e-17 93.6 80 65.0
Manes.08G049900 Manihot esculenta HOM05D002914 ORTHO05D003196 1.6e-17 93.2 71 60.6
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.6e-17 93.2 63 71.4
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 1.6e-17 93.2 62 72.6
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 2.1e-17 92.8 68 69.1
MD14G1070500 Malus domestica HOM05D002914 ORTHO05D003196 2.7e-17 92.4 105 51.4
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 2.7e-17 92.4 73 57.5
Ciclev10006230m.g Citrus clementina HOM05D002914 ORTHO05D003196 3.5e-17 92.0 98 60.2
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 4.6e-17 91.7 70 60.0
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 4.6e-17 91.7 70 60.0
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 7.8e-17 90.9 74 54.1
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 1.0e-16 90.5 102 53.9
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 1.7e-16 89.7 70 57.1
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 1.7e-16 89.7 66 62.1
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 1.7e-16 89.7 66 62.1
Duzib128G0409 Durio zibethinus HOM05D002914 ORTHO05D003196 2.3e-16 89.4 83 54.2
ATR0332G006 Amborella trichopoda HOM05D002914 ORTHO05D003196 3.9e-16 88.6 57 70.2
HanXRQChr10g0300121 Helianthus annuus HOM05D002914 ORTHO05D003196 3.9e-16 88.6 94 53.2
Lj1g0015891 Lotus japonicus HOM05D002914 ORTHO05D003196 3.9e-16 88.6 103 50.5
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 5.1e-16 88.2 71 56.3
Sc13g0001830 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.1e-15 87.0 76 60.5
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.5e-15 86.7 72 56.9
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 3.3e-15 85.5 67 61.2
Os03g0696150 Oryza sativa ssp. japonica HOM05D002914 ORTHO05D003196 4.3e-15 85.1 64 59.4
QL07p000101 Quercus lobata HOM05D002914 ORTHO05D003196 4.3e-15 85.1 71 64.8
Lsat_1_v5_gn_9_28661 Lactuca sativa HOM05D002914 ORTHO05D003196 5.6e-15 84.7 74 56.8
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 7.3e-15 84.3 64 57.8
Gohir.D01G121050 Gossypium hirsutum HOM05D002914 ORTHO05D003196 7.3e-15 84.3 64 57.8
MBI02_g05666_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 7.3e-15 84.3 83 54.2
Gorai.002G147700 Gossypium raimondii HOM05D002914 ORTHO05D003196 9.6e-15 84.0 64 57.8
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 8.1e-14 80.9 57 63.2
FAN09G0984 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.4e-13 79.3 57 63.2
Migut.K00083 Erythranthe guttata HOM05D002914 ORTHO05D003196 4.0e-13 78.6 73 60.3
Actinidia17240 Actinidia chinensis HOM05D002914 ORTHO05D003196 1.3e-11 73.6 73 50.7
AUR62024432 Chenopodium quinoa HOM05D002914 ORTHO05D003196 4.9e-11 71.6 67 52.2
ClCG04G003270 Citrullus lanatus HOM05D002914 ORTHO05D003196 4.9e-11 71.6 76 51.3
ECA247G2219 Erigeron canadensis HOM05D000031 ORTHO05D000003 6.4e-11 71.2 83 43.4
Sabra06G0036900 Salix brachista HOM05D002914 ORTHO05D003196 6.4e-11 71.2 75 52.0
DCAR_020485 Daucus carota HOM05D002914 ORTHO05D003196 1.1e-10 70.5 68 51.5
HPP92_023573 Vanilla planifolia HOM05D002914 ORTHO05D003196 1.9e-10 69.7 75 46.7
CsaV3_4G011800 Cucumis sativus L. HOM05D002914 ORTHO05D003196 2.4e-10 69.3 91 44.0
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.2e-09 67.0 59 47.5
MBI04_g44434_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 2.1e-09 66.2 38 73.7
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 7.8e-09 64.3 78 43.6
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 7.8e-09 64.3 69 47.8
MELO3C023115.2 Cucumis melo HOM05D002914 ORTHO05D003196 2.3e-08 62.8 79 45.6
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 2.3e-08 62.8 54 53.7
arahy.Tifrunner.gnm1.ann1.TRJ4SS Arachis hypogaea HOM05D002914 ORTHO05D003196 8.7e-08 60.8 40 67.5
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 8.7e-08 60.8 62 48.4
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 1.1e-07 60.5 61 47.5
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.1e-07 60.5 65 40.0
Migut.J01766 Erythranthe guttata HOM05D002914 ORTHO05D003196 1.5e-07 60.1 80 37.5
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 1.5e-07 60.1 86 34.9
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.9e-07 59.7 72 43.1
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 1.9e-07 59.7 71 40.8
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 2.5e-07 59.3 72 43.1
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 2.5e-07 59.3 69 37.7
Zm00001eb216960 Zea mays HOM05D002914 ORTHO05D003196 2.5e-07 59.3 58 50.0
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 4.3e-07 58.5 72 41.7
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 4.3e-07 58.5 60 41.7
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 5.6e-07 58.2 76 38.2
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 5.6e-07 58.2 55 43.6
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 5.6e-07 58.2 61 44.3
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 7.3e-07 57.8 55 47.3
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 7.3e-07 57.8 69 44.9
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 7.3e-07 57.8 69 44.9
Atru.ctg24.30 Acer truncatum HOM05D002914 ORTHO05D003196 9.6e-07 57.4 74 54.1
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 9.6e-07 57.4 74 35.1
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 1.3e-06 57.0 59 47.5
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.6e-06 56.6 71 38.0
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.6e-06 56.6 96 32.3
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 2.1e-06 56.2 60 45.0
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.8e-06 55.8 76 36.8
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 3.6e-06 55.5 79 32.9
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 3.6e-06 55.5 69 37.7
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 4.8e-06 55.1 77 37.7
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 6.2e-06 54.7 70 37.1
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 6.2e-06 54.7 67 43.3
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 8.1e-06 54.3 69 36.2


User provided reference genes

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