Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 3.6e-84 315.1 184 100.0
BraA07t29972Z Brassica rapa HOM05D000531 ORTHO05D001630 4.0e-51 205.3 153 85.0
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 5.1e-46 188.3 145 84.8
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 5.1e-46 188.3 145 84.8
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 5.1e-46 188.3 145 84.8
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 1.8e-43 179.9 145 82.8
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 1.8e-43 179.9 145 82.8
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 1.8e-43 179.9 145 82.8
Sp5g05680 Schrenkiella parvula HOM05D005060 ORTHO05D005975 5.3e-43 178.3 149 80.5
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 7.6e-42 174.5 145 80.7
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 7.6e-42 174.5 145 80.7
A04p03610 Brassica napus HOM05D005060 ORTHO05D005975 2.5e-40 169.5 145 78.6
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 1.8e-38 163.3 148 77.0
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 1.1e-37 160.6 149 77.2
BcaB02g08343 Brassica carinata HOM05D005060 ORTHO05D005975 4.3e-37 158.7 145 75.9
Carub.0005s2365 Capsella rubella HOM05D005060 ORTHO05D005975 3.1e-35 152.5 150 74.7
BcaC07g40108 Brassica carinata HOM05D005060 ORTHO05D005975 9.0e-35 151.0 145 73.1
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 1.5e-34 150.2 139 68.3
BolC6t37551H Brassica oleracea HOM05D005060 ORTHO05D005975 1.5e-34 150.2 145 72.4
C06p23830 Brassica napus HOM05D005060 ORTHO05D005975 2.0e-34 149.8 145 72.4
Thhalv10006294m.g Eutrema salsugineum HOM05D005060 ORTHO05D005975 5.8e-34 148.3 148 72.3
AL5G38310 Arabidopsis lyrata HOM05D005060 ORTHO05D005975 1.7e-33 146.7 150 72.7
BcaB03g14272 Brassica carinata HOM05D005060 ORTHO05D005975 2.8e-28 129.4 131 66.4
A07p12270 Brassica napus HOM05D006945 ORTHO05D005549 2.4e-19 99.8 84 72.6
A07p12290 Brassica napus HOM05D006945 ORTHO05D005549 2.4e-19 99.8 84 72.6
BraA07t29011Z Brassica rapa HOM05D006945 ORTHO05D005549 2.4e-19 99.8 84 72.6
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 1.0e-14 84.3 146 50.0
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 1.1e-13 80.9 160 44.4
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 2.6e-13 79.7 147 49.7
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 3.3e-13 79.3 162 46.3
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 3.3e-13 79.3 153 52.3
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 3.3e-13 79.3 139 46.0
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 5.7e-13 78.6 164 46.3
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 7.4e-13 78.2 151 49.0
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 2.8e-12 76.3 153 49.0
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 4.8e-12 75.5 144 47.2
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 4.8e-12 75.5 144 47.2
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 4.8e-12 75.5 151 51.0
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 8.2e-12 74.7 151 51.0
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 1.8e-11 73.6 144 50.0
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 2.4e-11 73.2 145 42.8
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 3.1e-11 72.8 142 53.5
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 3.1e-11 72.8 144 46.5
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 3.1e-11 72.8 147 44.2
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 9.1e-11 71.2 151 43.7
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 1.2e-10 70.9 147 40.8
Aa31LG10G11770 Aethionema arabicum HOM05D005060 ORTHO05D005975 2.6e-10 69.7 151 51.7
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 2.6e-10 69.7 154 42.2
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 2.6e-10 69.7 141 43.3
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 3.5e-10 69.3 151 50.3
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 3.5e-10 69.3 89 62.9
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 4.5e-10 68.9 151 49.0
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 1.7e-09 67.0 153 46.4
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 1.7e-09 67.0 160 43.1
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 1.7e-09 67.0 155 45.2
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 2.2e-09 66.6 162 45.1
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 2.9e-09 66.2 148 48.0
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 2.9e-09 66.2 119 47.1
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 2.9e-09 66.2 143 46.2
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 6.5e-09 65.1 138 42.8
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 8.5e-09 64.7 126 45.2
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 8.5e-09 64.7 73 67.1
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 8.5e-09 64.7 73 67.1
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 8.5e-09 64.7 73 67.1
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 5.5e-08 62.0 91 56.0
THA.LOC104803240 Tarenaya hassleriana HOM05D005060 ORTHO05D005975 5.5e-08 62.0 146 49.3
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 9.4e-08 61.2 142 43.0
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 1.6e-07 60.5 144 41.0
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 2.1e-07 60.1 74 63.5
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 2.7e-07 59.7 137 43.8
Glyma.03G120300 Glycine max HOM05D005060 ORTHO05D005975 3.6e-07 59.3 149 43.6
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 6.1e-07 58.5 168 41.1
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 1.0e-06 57.8 157 43.3
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.0e-06 57.8 146 41.8
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.4e-06 57.4 148 41.9
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.8e-06 57.0 139 44.6
Psat3g082360 Pisum sativum HOM05D005060 ORTHO05D005975 1.8e-06 57.0 149 45.6
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 3.0e-06 56.2 145 42.1
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 4.0e-06 55.8 156 45.5
Actinidia05489 Actinidia chinensis HOM05D005060 ORTHO05D005975 8.8e-06 54.7 42 71.4


User provided reference genes

Program Settings