Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p22920 Brassica napus HOM05D010499 ORTHO05D013671 0.0e+00 2692.9 1451 100.0
BraA07t29958Z Brassica rapa HOM05D010499 ORTHO05D013671 0.0e+00 2567.7 1471 95.5
C06p23550 Brassica napus HOM05D010499 ORTHO05D013671 0.0e+00 2122.1 1538 79.6
BolC6t37526H Brassica oleracea HOM05D010499 ORTHO05D013671 0.0e+00 2095.1 1560 78.4
BcaC08g44783 Brassica carinata HOM05D010499 ORTHO05D013671 0.0e+00 2083.1 1549 78.7
BcaB02g07653 Brassica carinata HOM05D010499 ORTHO05D013671 0.0e+00 1934.5 1580 71.8
Sp5g06040 Schrenkiella parvula HOM05D010499 ORTHO05D013671 0.0e+00 1650.2 1627 62.6
Thhalv10005743m.g Eutrema salsugineum HOM05D010499 ORTHO05D013671 0.0e+00 1444.9 1622 58.0
AL5G37740 Arabidopsis lyrata HOM05D010499 ORTHO05D013671 0.0e+00 1313.9 1584 54.4
AT3G56410 Arabidopsis thaliana HOM05D010499 ORTHO05D013671 0.0e+00 1297.0 1581 54.0
CARHR166540 Cardamine hirsuta HOM05D010499 ORTHO05D013671 0.0e+00 1085.9 1588 49.4
Carub.0005s2319 Capsella rubella HOM05D010499 ORTHO05D013671 5.8e-270 935.3 1583 44.3
Aa31LG10G11300 Aethionema arabicum HOM05D010499 ORTHO05D013671 5.8e-262 908.7 1595 45.0
A09p49360 Brassica napus HOM05D010499 ORTHO05D023864 1.0e-56 226.9 557 37.7
THA.LOC104824598 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 1.8e-53 216.1 633 34.4
THA.LOC104814291 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 8.4e-43 180.6 544 32.7
BolC8t50793H Brassica oleracea HOM05D010499 ORTHO05D023864 1.5e-31 143.3 315 38.7
C08p31720 Brassica napus HOM05D010499 ORTHO05D023864 2.4e-29 136.0 312 38.1
BcaC07g39955 Brassica carinata HOM05D010499 ORTHO05D023864 6.0e-25 121.3 228 41.2
BraA09t40389Z Brassica rapa HOM05D010499 ORTHO05D023864 5.3e-13 81.6 77 54.5
CARHR208070 Cardamine hirsuta HOM05D010812 ORTHO05D004682 7.2e-10 71.2 509 22.8
CSS0024314 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 2.7e-09 69.3 111 41.4
COL.COLO4_19477 Corchorus olitorius HOM05D005345 ORTHO05D004682 2.7e-09 69.3 108 40.7
Manes.07G142000 Manihot esculenta HOM05D005345 ORTHO05D004682 3.6e-09 68.9 116 37.9
Oeu006068.1 Olea europaea HOM05D005345 ORTHO05D004682 6.1e-09 68.2 61 52.5
Cpa.g.sc19.39 Carica papaya HOM05D005345 ORTHO05D004682 1.8e-08 66.6 82 41.5
Sabra19G0075200 Salix brachista HOM05D005345 ORTHO05D004682 2.3e-08 66.2 91 42.9
CSS0033913 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 3.9e-08 65.5 138 32.6
Gohir.A05G404400 Gossypium hirsutum HOM05D005345 ORTHO05D004682 3.9e-08 65.5 59 50.8
Aa31LG11G6050 Aethionema arabicum HOM05D010812 ORTHO05D004682 5.1e-08 65.1 211 28.4
Gohir.D04G011300 Gossypium hirsutum HOM05D005345 ORTHO05D004682 5.1e-08 65.1 59 50.8
BolC4t21808H Brassica oleracea HOM05D002045 ORTHO05D002014 6.7e-08 64.7 349 24.4
A05p01400 Brassica napus HOM05D002045 ORTHO05D002014 8.8e-08 64.3 347 24.5
Gorai.011G206300 Gossypium raimondii HOM05D005345 ORTHO05D004682 8.8e-08 64.3 108 39.8
Manes.10G003400 Manihot esculenta HOM05D005345 ORTHO05D004682 8.8e-08 64.3 63 46.0
Gohir.A10G177500 Gossypium hirsutum HOM05D005345 ORTHO05D004682 1.5e-07 63.5 108 38.9
Gorai.012G013500 Gossypium raimondii HOM05D005345 ORTHO05D004682 1.5e-07 63.5 59 49.2
THA.LOC104816507 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 1.5e-07 63.5 205 30.7
Ciclev10030619m.g Citrus clementina HOM05D005345 ORTHO05D004682 2.0e-07 63.2 63 47.6
Prupe.2G184400 Prunus persica HOM05D002045 ORTHO05D002014 2.0e-07 63.2 93 39.8
Duzib106G0455 Durio zibethinus HOM05D005345 ORTHO05D004682 2.5e-07 62.8 109 39.4
Psat5g069400 Pisum sativum HOM05D005345 ORTHO05D004682 2.5e-07 62.8 92 39.1
arahy.Tifrunner.gnm1.ann1.DZPX8Q Arachis hypogaea HOM05D005345 ORTHO05D004682 3.3e-07 62.4 115 34.8
arahy.Tifrunner.gnm1.ann1.E2ZVAX Arachis hypogaea HOM05D005345 ORTHO05D004682 3.3e-07 62.4 115 34.8
CsaV3_6G002400 Cucumis sativus L. HOM05D005345 ORTHO05D004682 3.3e-07 62.4 106 34.0
Rhsim09G0186300 Rhododendron simsii HOM05D005345 ORTHO05D004682 3.3e-07 62.4 131 35.9
Lalb_Chr08g0239261 Lupinus albus HOM05D005345 ORTHO05D004682 4.3e-07 62.0 63 47.6
Psat2g061880 Pisum sativum HOM05D005345 ORTHO05D004682 4.3e-07 62.0 143 33.6
Glyma.06G141400 Glycine max HOM05D005345 ORTHO05D004682 5.7e-07 61.6 78 44.9
vmacro09953 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 5.7e-07 61.6 82 37.8
VMungo1309G1748 Vigna mungo HOM05D005345 ORTHO05D004682 5.7e-07 61.6 83 44.6
A03p02230 Brassica napus HOM05D010812 ORTHO05D004682 7.4e-07 61.2 201 32.8
BraA03t09587Z Brassica rapa HOM05D010812 ORTHO05D004682 7.4e-07 61.2 201 32.8
Dinv34499 Davidia involucrata HOM05D005345 ORTHO05D004682 7.4e-07 61.2 65 44.6
Lalb_Chr10g0102841 Lupinus albus HOM05D005345 ORTHO05D004682 7.4e-07 61.2 158 32.3
Oeu018746.1 Olea europaea HOM05D005345 ORTHO05D004682 7.4e-07 61.2 99 37.4
Oeu018747.2 Olea europaea HOM05D005345 ORTHO05D004682 7.4e-07 61.2 99 37.4
Glyma.02G219400 Glycine max HOM05D005345 ORTHO05D004682 9.7e-07 60.8 112 35.7
C04p01570 Brassica napus HOM05D002045 ORTHO05D002014 1.3e-06 60.5 396 24.5
Lsat_1_v5_gn_2_126680 Lactuca sativa HOM05D005345 ORTHO05D004682 1.3e-06 60.5 104 36.5
Lj1g0012895 Lotus japonicus HOM05D005345 ORTHO05D004682 1.3e-06 60.5 117 39.3
AT2G46380 Arabidopsis thaliana HOM05D002045 ORTHO05D002014 1.7e-06 60.1 423 22.5
CiPaw.01G307600 Carya illinoinensis HOM05D005345 ORTHO05D004682 1.7e-06 60.1 84 41.7
Ca_16857_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 1.7e-06 60.1 129 33.3
Ca_29505_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 1.7e-06 60.1 129 33.3
Potri.019G061400 Populus trichocarpa HOM05D005345 ORTHO05D004682 1.7e-06 60.1 161 34.2
QL08p065100 Quercus lobata HOM05D005345 ORTHO05D004682 1.7e-06 60.1 193 29.5
THA.LOC104802062 Tarenaya hassleriana HOM05D002045 ORTHO05D002014 1.7e-06 60.1 484 22.7
BcaC06g32228 Brassica carinata HOM05D010812 ORTHO05D004682 2.2e-06 59.7 202 28.2
Eucgr.G03149 Eucalyptus grandis HOM05D005345 ORTHO05D004682 2.2e-06 59.7 92 35.9
ATR1127G123 Amborella trichopoda HOM05D002045 ORTHO05D002014 2.8e-06 59.3 49 53.1
CDE04G0305 Ceratophyllum demersum HOM05D025459 ORTHO05D004682 2.8e-06 59.3 58 48.3
Sed0015893 Sechium edule HOM05D005345 ORTHO05D004682 2.8e-06 59.3 105 32.4
TAR629G3516 Trochodendron aralioides HOM05D002045 ORTHO05D002014 2.8e-06 59.3 54 48.1
TPR.G33944 Trifolium pratense HOM05D005345 ORTHO05D004682 3.7e-06 58.9 134 31.3
TWI34G1380 Tripterygium wilfordii HOM05D002045 ORTHO05D002014 3.7e-06 58.9 87 39.1
arahy.Tifrunner.gnm1.ann1.0QV8DZ Arachis hypogaea HOM05D005345 ORTHO05D004682 4.8e-06 58.5 115 33.9
arahy.Tifrunner.gnm1.ann1.A39QJ2 Arachis hypogaea HOM05D005345 ORTHO05D004682 4.8e-06 58.5 115 33.9
Thhalv10005787m.g Eutrema salsugineum HOM05D002045 ORTHO05D002014 4.8e-06 58.5 189 29.1
Rhsim01G0170600 Rhododendron simsii HOM05D002045 ORTHO05D002014 4.8e-06 58.5 50 54.0
MELO3C020021.2 Cucumis melo HOM05D005345 ORTHO05D004682 6.3e-06 58.2 106 32.1
Thhalv10001333m.g Eutrema salsugineum HOM05D002045 ORTHO05D002014 6.3e-06 58.2 493 23.1
Dinv21859 Davidia involucrata HOM05D005345 ORTHO05D004682 8.2e-06 57.8 124 35.5
Lj1A968T60 Lonicera japonica HOM05D005345 ORTHO05D004682 8.2e-06 57.8 77 40.3


User provided reference genes

Program Settings