Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 1.9e-84 315.8 164 100.0
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 1.9e-76 289.3 164 92.1
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 1.9e-76 289.3 164 92.1
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.6e-75 286.2 164 91.5
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.1e-73 280.0 164 86.6
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 5.2e-66 254.6 164 78.0
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 2.0e-65 252.7 160 80.6
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 4.4e-65 251.5 160 80.0
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 5.7e-65 251.1 160 80.0
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 1.3e-64 250.0 164 78.0
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.3e-64 250.0 164 78.0
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 1.1e-63 246.9 160 80.0
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 2.4e-63 245.7 164 75.0
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 9.1e-63 243.8 164 76.2
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 3.5e-62 241.9 164 73.8
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 4.5e-62 241.5 164 73.8
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 6.5e-61 237.7 160 71.2
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 3.2e-60 235.3 165 74.5
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.7e-56 223.0 160 67.5
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.4e-47 193.4 159 59.1
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 4.4e-41 171.8 161 52.8
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.6e-38 163.3 161 49.1
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 2.0e-38 162.9 161 46.6
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 7.8e-38 161.0 161 46.6
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.7e-37 159.8 161 47.2
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 3.9e-37 158.7 161 46.6
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 5.0e-37 158.3 161 46.6
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.0e-37 158.3 161 46.0
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.0e-37 158.3 161 46.0
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.0e-37 158.3 161 47.2
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 8.6e-37 157.5 161 46.0
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 5.6e-36 154.8 161 49.1
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 7.3e-36 154.5 161 46.0
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 7.3e-36 154.5 161 45.3
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 9.5e-36 154.1 161 46.0
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 9.5e-36 154.1 161 44.7
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.6e-35 153.3 166 45.2
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.6e-35 153.3 161 44.1
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 3.6e-35 152.1 161 44.7
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 3.6e-35 152.1 161 47.8
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.2e-35 151.4 163 45.4
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 6.2e-35 151.4 161 47.2
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 8.0e-35 151.0 161 47.8
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.1e-34 150.6 161 43.5
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 1.4e-34 150.2 166 44.6
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.4e-34 150.2 161 44.7
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 1.4e-34 150.2 161 45.3
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 1.4e-34 150.2 161 42.9
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.0e-34 148.7 161 43.5
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.0e-34 148.7 161 43.5
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 5.2e-34 148.3 162 43.8
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.8e-34 147.9 161 46.6
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.5e-33 146.7 161 43.5
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.5e-33 146.7 166 42.8
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.0e-33 146.4 161 44.7
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 2.0e-33 146.4 161 43.5
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 2.0e-33 146.4 161 46.6
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 3.4e-33 145.6 162 42.6
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 3.4e-33 145.6 153 43.8
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 5.8e-33 144.8 161 42.2
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 5.8e-33 144.8 161 42.9
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 7.5e-33 144.4 161 45.3
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.3e-32 143.7 162 44.4
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.3e-32 143.7 162 43.2
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.3e-32 143.7 162 42.0
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.7e-32 143.3 159 44.7
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 2.2e-32 142.9 161 42.9
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.9e-32 142.5 161 41.6
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.9e-32 142.5 162 45.1
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.9e-32 142.5 162 43.2
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 2.9e-32 142.5 161 41.6
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.7e-32 142.1 161 46.0
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 3.7e-32 142.1 184 39.7
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 8.3e-32 141.0 161 41.6
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 8.3e-32 141.0 161 40.4
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 8.3e-32 141.0 162 41.4
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-31 140.6 161 41.0
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.1e-31 140.6 158 43.7
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.1e-31 140.6 158 43.7
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.4e-31 140.2 136 46.3
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.9e-31 139.8 161 46.0
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 2.4e-31 139.4 161 42.2
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 3.2e-31 139.0 161 41.0
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 3.2e-31 139.0 161 42.9
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 5.4e-31 138.3 161 42.2
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 5.4e-31 138.3 154 40.9
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 5.4e-31 138.3 143 46.9
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 7.0e-31 137.9 161 44.1
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 7.0e-31 137.9 135 48.9
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.2e-30 137.1 161 45.3
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.2e-30 137.1 160 42.5
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 1.6e-30 136.7 161 42.9
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.6e-30 136.7 158 42.4
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 2.7e-30 136.0 161 42.9
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.7e-30 136.0 161 42.9
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.5e-30 135.6 161 43.5
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 1.7e-29 133.3 136 46.3
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 2.3e-29 132.9 195 36.9
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.0e-29 132.5 161 42.2
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 3.0e-29 132.5 173 40.5
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 3.9e-29 132.1 161 37.9
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 6.6e-29 131.3 159 39.6
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 8.6e-29 131.0 164 36.6
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 8.6e-29 131.0 164 37.2
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.1e-28 130.6 165 39.4
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.1e-28 130.6 161 40.4
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 4.3e-28 128.6 178 38.2
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 5.6e-28 128.3 159 37.1
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 9.5e-28 127.5 159 39.0
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 1.6e-27 126.7 154 40.9
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 4.7e-27 125.2 155 36.8
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.4e-26 123.6 161 36.0
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 4.0e-26 122.1 158 38.0
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 6.8e-26 121.3 158 37.3
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 8.9e-26 120.9 135 41.5
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.2e-25 120.6 151 39.7
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 2.0e-25 119.8 158 39.2
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.6e-25 119.4 161 34.8
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 3.4e-25 119.0 172 36.0
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 3.4e-25 119.0 159 37.1
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 3.4e-25 119.0 213 32.9
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.9e-24 115.2 161 33.5
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.1e-23 114.0 161 34.2
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.6e-22 110.2 159 35.2
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 2.1e-22 109.8 147 36.7
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.0e-21 105.9 162 34.6
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 3.0e-21 105.9 139 36.7
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.6e-19 100.1 149 33.6
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.1e-19 99.8 114 43.0
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.8e-19 99.4 142 37.3
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 4.7e-19 98.6 159 38.4
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 5.4e-15 85.1 161 29.8
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.7e-13 80.1 129 33.3
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.3e-13 79.7 105 39.0
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 9.6e-12 74.3 159 28.9
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 4.7e-11 72.0 124 30.6
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 6.9e-10 68.2 130 28.5
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 1.2e-09 67.4 53 52.8
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 2.6e-09 66.2 67 46.3
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 7.6e-09 64.7 52 53.8
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 6.4e-08 61.6 75 38.7
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 9.3e-07 57.8 75 33.3
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.6e-06 57.0 53 39.6
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 6.0e-06 55.1 73 34.2


User provided reference genes

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