Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 2.2e-222 775.4 419 100.0
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.7e-214 749.2 424 97.4
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 9.4e-189 663.7 417 88.5
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 7.2e-181 637.5 428 84.8
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.4e-154 548.5 428 75.5
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 7.6e-146 521.2 421 74.1
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 3.5e-127 459.1 432 67.4
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.5e-127 459.1 428 68.5
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 4.9e-121 438.7 430 63.5
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.1e-103 380.2 414 58.7
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 3.0e-102 376.3 436 57.3
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 3.6e-95 352.8 373 60.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 2.0e-93 347.1 439 51.7
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.4e-91 340.1 443 53.7
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 4.5e-90 335.9 444 52.9
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 3.3e-85 319.7 446 50.4
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.8e-84 315.8 446 49.3
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 9.1e-83 311.6 424 49.5
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.3e-81 307.8 443 49.4
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 3.8e-81 306.2 405 51.9
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 3.2e-80 303.1 409 51.1
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 9.4e-80 301.6 411 50.6
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 3.6e-79 299.7 409 50.6
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 1.5e-77 294.3 404 50.2
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.7e-76 290.8 449 47.4
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.0e-73 281.6 446 47.1
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.7e-73 280.8 452 47.1
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 1.2e-66 258.1 451 43.9
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.2e-60 237.3 447 39.4
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 6.3e-60 235.7 463 39.5
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.7e-58 230.3 467 37.9
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 3.5e-58 229.9 453 40.0
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 7.8e-58 228.8 449 38.5
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.3e-57 228.0 444 38.3
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.2e-55 221.5 457 38.5
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.1e-55 220.7 452 37.4
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 4.7e-55 219.5 455 40.0
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.7e-55 219.5 465 37.6
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.7e-55 219.5 465 37.6
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 6.1e-55 219.2 436 38.1
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 8.0e-55 218.8 456 38.2
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 8.0e-55 218.8 467 36.8
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.3e-54 217.2 425 39.8
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 8.9e-54 215.3 465 38.1
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.2e-53 214.9 460 37.8
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.3e-52 211.5 417 40.0
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.9e-52 210.3 453 37.7
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 3.7e-52 209.9 447 36.7
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.2e-51 206.8 462 38.1
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 3.2e-51 206.8 417 37.6
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 4.1e-51 206.5 448 36.2
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.4e-51 206.1 429 38.5
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.4e-51 206.1 450 37.8
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.2e-50 204.9 408 38.2
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 2.7e-50 203.8 462 37.2
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 3.5e-50 203.4 459 36.4
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.0e-49 201.8 439 38.5
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 5.0e-49 199.5 444 36.5
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 1.5e-48 198.0 453 37.7
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 7.3e-48 195.7 449 37.6
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.1e-47 194.1 419 37.2
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.7e-47 193.0 463 35.9
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 6.2e-47 192.6 438 37.9
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 2.3e-46 190.7 432 35.9
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 5.2e-46 189.5 445 35.1
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.2e-45 188.3 447 36.7
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.2e-45 188.3 455 36.9
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.5e-45 188.0 453 35.1
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.6e-45 187.2 408 36.8
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 3.4e-45 186.8 432 37.7
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 5.8e-45 186.0 430 36.0
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 9.8e-45 185.3 436 37.4
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 6.4e-44 182.6 436 36.5
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 8.3e-44 182.2 448 36.6
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 8.3e-44 182.2 452 33.8
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 1.9e-43 181.0 427 34.7
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.4e-43 180.6 447 35.6
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.1e-42 177.6 433 37.4
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.7e-42 177.2 469 33.7
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 4.6e-42 176.4 469 35.2
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 4.6e-42 176.4 428 36.7
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.3e-41 174.9 419 36.3
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.7e-41 174.5 473 33.4
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 2.3e-41 174.1 457 35.4
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 3.0e-41 173.7 439 35.1
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 3.0e-41 173.7 417 36.5
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 3.9e-41 173.3 431 36.0
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 6.6e-41 172.6 449 34.5
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 8.6e-41 172.2 456 33.6
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.9e-40 171.0 423 34.8
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 1.9e-40 171.0 436 34.6
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 3.3e-40 170.2 452 35.6
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 5.6e-40 169.5 434 34.6
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 9.5e-40 168.7 446 36.5
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.1e-39 167.5 453 31.8
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 4.7e-39 166.4 442 34.4
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 8.1e-39 165.6 414 37.7
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 8.1e-39 165.6 455 34.1
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.4e-38 164.9 411 35.5
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.8e-38 164.5 464 34.3
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 2.3e-38 164.1 433 35.3
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.8e-38 162.5 464 34.1
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.6e-37 160.6 431 32.7
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 4.4e-37 159.8 442 36.4
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.3e-36 158.3 475 31.2
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 2.2e-36 157.5 434 34.3
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 2.9e-36 157.1 440 31.4
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 3.7e-36 156.8 455 32.3
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 1.1e-35 155.2 448 35.0
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 5.4e-35 152.9 432 34.7
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 5.4e-35 152.9 440 30.5
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 6.0e-34 149.4 445 33.0
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 6.6e-33 146.0 461 32.8
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 8.6e-33 145.6 423 33.1
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.5e-32 144.8 432 30.6
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 3.3e-32 143.7 437 31.6
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.6e-32 142.9 456 30.0
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.8e-31 140.6 418 31.8
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 2.4e-30 137.5 410 31.7
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 6.8e-30 136.0 410 31.5
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 6.8e-30 136.0 376 32.7
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 8.9e-30 135.6 434 31.8
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 1.2e-29 135.2 410 31.5
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.2e-29 135.2 447 30.6
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.8e-28 130.2 346 34.1
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 4.9e-28 129.8 410 31.2
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 4.9e-28 129.8 432 30.3
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 6.4e-28 129.4 307 36.2
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 2.7e-26 124.0 137 50.4
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 4.6e-26 123.2 197 38.1
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 7.8e-26 122.5 450 30.0
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.7e-25 121.3 475 29.5
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 8.7e-25 119.0 394 32.0
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.5e-24 117.5 406 28.8
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 5.6e-24 116.3 418 30.4
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.4e-22 110.9 105 56.2
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 4.0e-22 110.2 58 96.6
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 2.6e-21 107.5 346 31.2
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.3e-20 105.1 385 28.8
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 3.2e-19 100.5 155 43.9
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 6.0e-18 96.3 180 36.1
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.0e-17 95.5 388 29.1
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 5.1e-17 93.2 178 41.0
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 6.6e-17 92.8 114 45.6
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.9e-16 91.3 431 27.8
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.3e-16 90.5 96 45.8
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 9.6e-16 89.0 283 30.0
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.6e-15 88.2 302 32.1
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 3.6e-15 87.0 300 30.7
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 8.1e-15 85.9 206 30.1
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 8.1e-15 85.9 285 33.3
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.1e-14 85.5 377 27.9
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 6.9e-14 82.8 103 43.7
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 3.4e-13 80.5 313 31.0
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.7e-12 78.2 467 24.6
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.2e-12 77.8 101 43.6
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 2.2e-12 77.8 439 26.0
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.8e-12 77.0 163 33.7
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.9e-12 76.6 252 30.2
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.4e-11 74.3 97 44.3
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 2.4e-11 74.3 59 59.3
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 1.6e-10 71.6 123 42.3
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.0e-09 68.9 170 32.9
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 3.9e-09 67.0 88 51.1
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.1e-09 66.6 276 27.9
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 6.7e-09 66.2 46 69.6
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 8.7e-09 65.9 319 26.0
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 3.3e-08 63.9 103 35.9
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.6e-07 61.6 398 24.9
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 3.7e-07 60.5 68 48.5


User provided reference genes

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