Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 5.2e-173 610.9 301 100.0
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 5.8e-172 607.4 301 99.3
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 4.3e-167 591.3 301 97.0
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 7.3e-167 590.5 301 97.0
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 7.3e-167 590.5 301 97.0
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 3.0e-160 568.5 303 93.1
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 6.9e-141 504.2 307 83.7
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.5e-111 406.8 310 72.3
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.8e-110 402.5 310 72.6
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.3e-107 393.7 314 70.4
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 7.9e-105 384.4 310 70.0
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 9.7e-103 377.5 311 67.2
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 8.5e-99 364.4 317 64.4
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 2.4e-93 346.3 316 61.7
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 4.0e-88 328.9 304 60.9
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 3.7e-86 322.4 316 61.4
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 6.3e-86 321.6 250 69.2
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.8e-77 293.5 317 56.2
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 4.5e-76 288.9 279 62.4
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 2.3e-75 286.6 315 55.6
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.9e-74 283.5 315 55.2
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 7.2e-74 281.6 312 54.5
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 2.1e-73 280.0 284 58.5
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 2.8e-73 279.6 284 58.5
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 8.0e-73 278.1 284 58.1
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.4e-72 277.3 307 55.4
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 2.3e-72 276.6 315 54.9
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.0e-72 275.8 307 55.0
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 6.8e-72 275.0 313 54.3
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.8e-72 275.0 306 53.9
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.2e-71 274.2 311 53.4
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 2.6e-71 273.1 317 53.9
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 1.3e-70 270.8 313 50.8
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 1.7e-70 270.4 307 55.4
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 2.8e-70 269.6 321 53.3
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 3.7e-70 269.2 316 53.8
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 4.9e-70 268.9 312 52.6
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 6.3e-70 268.5 315 52.7
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.1e-69 267.7 312 56.4
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 2.4e-69 266.5 320 54.7
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 4.1e-69 265.8 311 53.4
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 4.1e-69 265.8 329 54.1
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 2.0e-68 263.5 312 51.9
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 2.7e-68 263.1 312 51.9
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 2.3e-67 260.0 342 51.8
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 2.9e-67 259.6 328 53.7
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 3.8e-67 259.2 313 51.4
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 5.0e-67 258.8 328 52.4
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 6.6e-67 258.5 342 51.5
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 3.3e-66 256.1 328 52.1
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 3.3e-66 256.1 315 49.2
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 4.3e-66 255.8 328 52.1
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 5.6e-66 255.4 313 53.7
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 2.1e-65 253.4 318 51.3
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 3.6e-65 252.7 306 51.3
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 4.7e-65 252.3 318 52.2
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 4.7e-65 252.3 329 53.2
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 8.0e-65 251.5 315 51.7
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 1.0e-64 251.1 309 51.5
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 1.4e-64 250.8 312 49.4
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.8e-64 250.4 331 49.2
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 1.8e-64 250.4 317 53.9
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.3e-64 250.0 322 53.4
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 6.8e-64 248.4 321 52.0
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 8.9e-64 248.1 318 50.0
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.5e-63 247.3 313 50.2
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.0e-63 246.9 308 50.6
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 2.0e-63 246.9 314 49.0
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 2.0e-63 246.9 318 53.5
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 2.0e-63 246.9 308 52.3
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 9.8e-63 244.6 318 51.3
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 1.7e-62 243.8 336 50.0
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 1.7e-62 243.8 310 46.8
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 2.9e-62 243.0 314 50.6
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 2.9e-62 243.0 320 49.4
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 4.9e-62 242.3 325 50.8
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 1.4e-61 240.7 317 50.8
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.9e-61 240.4 319 52.0
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 2.4e-61 240.0 318 50.9
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 7.0e-61 238.4 315 50.2
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 1.2e-60 237.7 317 49.5
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.6e-60 237.3 309 49.2
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 2.7e-60 236.5 319 49.8
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 4.6e-60 235.7 314 47.5
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 6.0e-60 235.3 309 49.2
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 1.0e-59 234.6 311 48.9
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.7e-59 233.8 312 48.4
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 2.3e-59 233.4 311 48.9
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 3.0e-59 233.0 310 47.7
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 5.0e-59 232.3 312 48.4
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.9e-58 230.3 318 49.4
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 6.2e-57 225.3 318 47.2
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 4.4e-55 219.2 293 49.8
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 7.5e-55 218.4 313 47.0
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 9.8e-55 218.0 264 53.0
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 6.4e-54 215.3 316 45.9
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.1e-53 214.5 313 47.6
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 5.4e-53 212.2 304 47.4
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 7.0e-53 211.8 308 46.4
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 6.0e-52 208.8 296 48.0
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 3.0e-51 206.5 325 46.5
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.1e-51 205.7 332 46.4
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.1e-50 204.5 316 44.9
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.9e-50 203.8 250 52.4
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 2.5e-50 203.4 233 52.4
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 3.3e-50 203.0 215 57.2
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-49 201.1 327 46.2
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.6e-49 199.5 179 64.8
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 6.2e-49 198.7 311 45.0
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.8e-48 197.2 311 44.7
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.0e-47 193.7 179 63.7
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 3.7e-46 189.5 343 44.3
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 4.1e-45 186.0 169 63.3
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 7.1e-45 185.3 304 44.4
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 9.2e-45 184.9 311 42.4
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 1.2e-44 184.5 302 42.4
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 2.1e-44 183.7 397 36.0
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 4.6e-44 182.6 302 42.4
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 1.1e-42 177.9 305 41.0
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 4.3e-42 176.0 308 40.6
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 1.2e-39 167.9 287 42.9
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 3.4e-39 166.4 305 41.3
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 9.2e-37 158.3 305 39.7
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.0e-35 153.3 146 58.9
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 3.9e-35 152.9 280 42.5
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 3.9e-35 152.9 226 44.7
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 7.3e-34 148.7 364 36.0
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 3.4e-31 139.8 102 72.5
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 3.4e-31 139.8 190 46.3
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 8.4e-30 135.2 291 39.2
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.4e-29 134.4 178 44.4
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.5e-26 123.6 117 59.8
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 5.6e-26 122.5 150 46.7
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 2.1e-25 120.6 141 51.8
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 4.8e-25 119.4 175 42.3
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 8.1e-25 118.6 175 42.3
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 1.4e-24 117.9 202 41.6
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 5.3e-24 115.9 150 46.7
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 4.5e-23 112.8 70 74.3
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 4.9e-22 109.4 117 53.8
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 6.4e-22 109.0 135 57.0
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 2.4e-21 107.1 159 41.5
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.2e-20 104.8 104 55.8
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 2.7e-20 103.6 160 41.2
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 6.2e-17 92.4 68 70.6
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 6.2e-17 92.4 68 70.6
BcaC05g26039 Brassica carinata HOM05D004212 ORTHO05D032610 8.1e-17 92.0 74 63.5
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 1.1e-16 91.7 145 42.8
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 3.1e-16 90.1 108 56.5
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 3.4e-15 86.7 233 32.6
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 4.5e-15 86.3 108 54.6
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 8.4e-14 82.0 168 40.5
BolC4t25439H Brassica oleracea HOM05D038158 ORTHO05D042869 5.5e-13 79.3 65 70.8
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 7.4e-10 68.9 56 58.9
C04p38620 Brassica napus HOM05D038158 ORTHO05D042869 6.2e-09 65.9 105 47.6
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 1.1e-08 65.1 180 30.0
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 5.3e-08 62.8 56 66.1
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.6e-07 60.5 103 47.6
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 4.5e-07 59.7 55 54.5
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 5.8e-07 59.3 60 55.0
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-06 58.2 38 68.4
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 2.2e-06 57.4 85 48.2


User provided reference genes

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