Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 8.4e-282 973.0 486 100.0
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.9e-241 839.0 486 87.0
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.5e-238 829.3 487 85.2
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.0e-231 806.6 486 83.5
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.5e-230 802.7 488 83.0
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 3.4e-230 801.6 488 83.2
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 3.4e-230 801.6 488 83.2
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 7.5e-230 800.4 488 82.6
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 7.7e-227 790.4 438 90.9
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 4.7e-224 781.2 490 80.2
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.3e-218 763.1 488 79.9
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 4.4e-214 748.0 502 77.1
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 3.2e-212 741.9 486 77.2
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.0e-211 739.2 486 77.0
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 2.0e-211 739.2 488 76.2
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 4.6e-211 738.0 486 76.5
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 4.7e-200 701.4 507 74.0
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.1e-193 680.2 503 69.0
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 7.3e-185 651.0 454 71.8
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 6.9e-175 617.8 486 62.1
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 5.5e-172 608.2 495 60.6
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 9.3e-172 607.4 486 60.3
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.6e-171 606.7 486 61.1
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.3e-170 603.6 486 59.9
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.8e-170 603.2 482 61.6
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.3e-170 602.8 490 61.8
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 6.7e-170 601.3 493 60.4
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.9e-169 599.7 489 60.1
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 5.6e-169 598.2 486 61.3
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 7.4e-169 597.8 486 61.1
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 1.6e-168 596.7 489 59.9
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.7e-168 595.5 489 59.3
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.7e-168 595.5 489 59.3
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 3.7e-168 595.5 489 60.5
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 8.1e-168 594.3 488 60.9
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 2.4e-167 592.8 486 60.9
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.4e-167 592.8 491 60.7
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 5.3e-167 591.7 493 60.2
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 3.4e-166 589.0 460 62.2
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 5.8e-166 588.2 488 59.8
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 5.8e-166 588.2 489 59.1
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 8.4e-165 584.3 490 58.4
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 4.2e-164 582.0 489 59.1
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.2e-164 582.0 489 58.3
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 5.5e-164 581.6 489 59.1
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.6e-163 580.1 484 58.9
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 2.7e-163 579.3 490 58.0
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 3.5e-163 578.9 490 57.8
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 3.5e-163 578.9 493 57.8
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.8e-162 576.6 490 57.6
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 3.0e-162 575.9 486 60.5
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 8.7e-162 574.3 489 59.3
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 8.7e-162 574.3 486 57.6
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 3.3e-161 572.4 484 59.9
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 4.3e-161 572.0 470 61.1
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 5.7e-161 571.6 458 60.9
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.1e-160 569.7 478 58.6
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 2.1e-160 569.7 464 60.3
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.4e-159 567.0 465 59.8
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 2.4e-159 566.2 460 60.4
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 4.1e-159 565.5 467 59.5
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 2.0e-158 563.1 490 58.6
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 4.5e-158 562.0 465 59.8
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.0e-157 560.8 464 59.9
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 6.5e-157 558.1 488 57.8
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 8.5e-157 557.8 490 56.9
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-156 557.4 490 57.1
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.1e-156 557.4 487 57.9
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 3.2e-156 555.8 490 56.9
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 3.2e-156 555.8 454 60.6
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 5.5e-156 555.1 490 57.1
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.2e-155 553.9 464 59.3
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 2.1e-155 553.1 490 56.9
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.1e-155 553.1 489 57.1
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 2.1e-155 553.1 473 59.4
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.6e-155 552.4 455 60.7
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.0e-154 549.3 491 56.4
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 6.7e-154 548.1 494 56.7
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.9e-153 546.6 470 57.4
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 3.3e-153 545.8 459 58.6
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 4.3e-153 545.4 488 56.4
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.3e-153 545.4 493 56.8
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.3e-152 543.9 475 57.7
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.2e-152 543.1 489 56.4
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.2e-152 543.1 476 58.0
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 2.2e-152 543.1 486 56.4
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.8e-152 542.0 494 56.7
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 4.8e-152 542.0 486 56.4
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 6.3e-152 541.6 490 55.9
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 4.1e-151 538.9 465 57.4
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 1.5e-150 537.0 479 57.2
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.3e-149 533.9 421 61.5
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 6.5e-149 531.6 509 55.6
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.5e-148 529.6 431 60.3
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 7.2e-148 528.1 461 56.2
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.9e-146 522.3 446 56.3
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.4e-145 518.8 486 55.3
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.6e-142 509.6 517 52.4
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 5.9e-142 508.4 499 52.3
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.9e-140 503.4 496 53.2
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 3.6e-139 499.2 491 54.2
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 4.7e-139 498.8 477 53.7
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.0e-138 497.7 471 52.9
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 3.9e-138 495.7 472 51.5
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 6.7e-138 495.0 392 60.7
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 7.4e-137 491.5 412 61.4
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 7.0e-135 485.0 411 58.2
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.3e-133 480.7 422 57.1
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 2.0e-129 466.8 452 48.7
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 7.5e-129 464.9 460 49.3
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.8e-128 463.0 468 52.1
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.8e-127 460.3 492 51.8
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.4e-127 459.9 465 49.7
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 4.2e-124 449.1 455 47.7
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 4.4e-121 439.1 571 45.5
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 8.6e-117 424.9 366 59.0
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.5e-113 414.1 388 52.6
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.5e-113 411.8 388 52.6
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 7.8e-110 401.7 378 54.5
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.6e-107 394.0 296 64.5
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.7e-104 384.0 464 45.9
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 4.9e-104 382.5 296 61.5
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 7.5e-97 358.6 430 47.9
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 4.9e-96 355.9 509 41.3
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.6e-92 342.4 493 43.4
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 4.7e-91 339.3 399 42.1
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 6.2e-83 312.4 290 55.2
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.4e-79 301.2 369 47.2
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.6e-78 297.7 430 40.2
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.1e-75 287.3 369 40.1
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 4.3e-68 263.1 282 48.9
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 4.8e-67 259.6 231 57.1
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 9.9e-65 251.9 220 58.6
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 2.3e-61 240.7 175 63.4
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.3e-58 229.6 272 54.4
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.8e-57 226.1 260 55.0
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 7.6e-49 199.1 118 72.9
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 3.2e-47 193.7 214 49.5
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 8.7e-45 185.7 227 42.3
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.5e-44 184.1 260 49.2
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 1.8e-42 177.9 207 47.3
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 4.1e-34 150.2 158 48.7
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 5.0e-32 143.3 238 37.4
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 5.5e-31 139.8 114 60.5
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 9.4e-31 139.0 99 63.6
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.5e-28 131.7 89 75.3
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.3e-27 128.6 134 48.5
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 1.7e-19 101.7 242 31.0
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 5.3e-18 96.7 60 71.7
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 3.2e-15 87.4 95 46.3
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 3.2e-15 87.4 70 55.7
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.4e-13 82.0 55 63.6
BraA07t29785Z Brassica rapa HOM05D004439 ORTHO05D043038 3.0e-13 80.9 39 94.9
BolC6t37210H Brassica oleracea HOM05D004439 ORTHO05D043038 1.8e-10 71.6 39 82.1
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.9e-07 61.6 80 47.5
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.9e-07 61.6 33 75.8
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 9.4e-07 59.3 38 63.2


User provided reference genes

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