Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 3866.2 1955 100.0
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 3789.6 1962 98.2
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 3775.7 1955 97.6
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 3712.5 1955 96.3
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 3697.9 1973 95.4
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 3460.2 1961 89.8
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 3405.2 1961 88.1
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 3387.0 1820 94.6
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 3321.6 1971 86.0
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 3306.9 1952 86.2
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 3297.7 1960 85.8
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 3279.6 1960 85.4
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 3042.7 2007 77.4
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2785.4 1969 71.8
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2209.5 1991 57.0
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2205.6 1991 57.5
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2193.7 1990 57.0
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2177.1 1986 56.5
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2176.7 1992 56.4
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2174.8 1987 56.4
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2171.4 1986 56.7
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2154.4 1982 56.5
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2144.0 1993 55.9
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2138.6 1985 56.0
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2129.0 1984 55.9
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2126.7 1989 55.7
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2125.9 2056 54.8
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2125.9 2005 55.8
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2114.3 1990 55.1
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2111.3 1983 55.3
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2108.6 1992 55.1
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2095.9 1994 55.4
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2088.9 1989 55.1
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2070.4 1992 54.6
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2066.6 1997 54.5
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2065.0 1980 54.9
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2059.3 1982 54.8
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2056.6 1972 54.8
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2041.9 1986 53.6
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2035.0 2193 50.7
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2033.8 1993 53.6
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2031.9 1949 54.7
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2028.4 1989 53.6
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2020.7 1999 54.0
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2001.5 1983 53.5
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 1997.6 1877 55.1
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 1992.6 1985 52.6
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1990.7 2192 49.7
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 1982.6 1977 52.8
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1981.1 2005 52.0
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1965.7 1987 52.1
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1964.9 2291 47.8
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 1964.5 1992 52.1
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 1961.4 1993 52.0
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1959.9 1826 54.9
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1958.3 2002 51.6
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1956.8 1867 54.3
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1953.3 2162 50.0
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 1951.8 1967 51.8
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1949.9 2001 52.3
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 1947.2 1990 51.8
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1933.3 1953 51.8
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1930.6 1997 51.2
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1923.3 1976 52.6
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1921.7 1946 52.6
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1915.2 1984 51.4
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1909.8 1994 50.9
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1895.9 1983 51.3
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1886.7 1633 59.1
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1882.5 1984 50.9
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1865.1 1978 50.9
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1860.9 1975 50.8
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1834.3 1959 50.8
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1821.2 2023 49.4
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1802.7 1981 49.6
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1796.9 1953 48.8
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1740.7 1998 46.9
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1518.1 1181 64.0
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1432.5 1279 57.5
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1359.4 1276 54.7
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1341.3 1848 40.5
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1223.8 1986 37.9
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1209.1 2077 36.0
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1186.4 1082 56.8
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1144.8 2038 35.4
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1106.3 1448 44.3
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1087.8 991 55.9
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 1.1e-295 1021.1 1172 48.8
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 3.2e-287 993.0 2150 32.6
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 5.8e-249 865.9 784 56.8
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 7.4e-244 849.0 1131 43.8
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.3e-236 823.2 1003 44.9
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 7.7e-233 812.4 955 48.2
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 4.8e-219 766.5 522 76.2
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.9e-216 757.3 977 44.8
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 6.5e-208 729.6 912 45.3
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 1.5e-204 718.4 810 49.8
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 5.1e-160 570.5 490 59.8
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 9.3e-154 549.7 682 46.5
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 3.3e-151 541.2 524 51.7
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 2.7e-137 495.0 552 48.2
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 1.7e-123 449.1 393 58.3
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 6.5e-123 447.2 679 39.5
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 3.0e-120 438.3 342 69.3
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.1e-117 429.9 292 72.3
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 2.0e-111 409.1 478 44.6
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 3.2e-106 391.7 460 44.3
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 8.2e-102 377.1 874 30.9
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 8.2e-94 350.5 225 76.0
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 2.2e-86 325.9 258 60.9
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.8e-86 325.5 378 45.5
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 9.8e-79 300.4 341 50.7
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 5.1e-51 208.4 254 44.9
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 1.1e-48 200.7 288 44.8
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.8e-48 199.9 342 37.4
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 4.4e-47 195.3 192 51.0
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 7.6e-47 194.5 192 50.0
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.4e-45 189.5 336 37.8
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.3e-43 183.0 237 47.7
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 3.9e-43 182.2 534 27.5
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 8.1e-41 174.5 293 34.5
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 5.2e-40 171.8 145 64.1
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 1.3e-38 167.2 125 67.2
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 6.4e-38 164.9 281 37.7
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 5.8e-31 141.7 139 49.6
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 8.4e-30 137.9 96 72.9
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 8.4e-30 137.9 192 40.6
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 3.5e-28 132.5 579 25.2
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 3.3e-26 125.9 93 67.7
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 2.4e-24 119.8 189 38.6
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.2e-23 117.5 291 30.2
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 5.8e-23 115.2 107 53.3
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 2.9e-22 112.8 120 49.2
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 4.9e-22 112.1 118 49.2
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 4.2e-21 109.0 140 47.1
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 3.5e-20 105.9 116 51.7
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 3.5e-20 105.9 116 51.7
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 7.9e-20 104.8 163 41.7
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.0e-19 102.8 89 56.2
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.0e-19 102.8 89 56.2
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 5.1e-19 102.1 94 54.3
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 6.7e-19 101.7 89 55.1
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 5.6e-18 98.6 248 30.6
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.4e-16 94.0 137 40.9
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 1.4e-16 94.0 208 29.3
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 4.0e-16 92.4 145 42.1
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 4.5e-15 89.0 131 42.0
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 1.6e-12 80.5 95 43.2
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 1.3e-11 77.4 88 42.0
BcaC08g43232 Brassica carinata HOM05D004963 ORTHO05D039387 3.0e-11 76.3 56 71.4
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 5.1e-11 75.5 58 55.2
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 4.3e-10 72.4 88 44.3
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 3.7e-09 69.3 126 34.9
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 4.8e-09 68.9 72 41.7
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 2.4e-08 66.6 51 58.8
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 7.7e-07 61.6 139 30.9


User provided reference genes

Program Settings