Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p17550 Brassica napus HOM05D002848 ORTHO05D003043 6.1e-173 610.9 354 100.0
BraA07t29475Z Brassica rapa HOM05D002848 ORTHO05D003043 3.6e-165 585.1 410 86.3
C07p25510 Brassica napus HOM05D002848 ORTHO05D003043 7.1e-129 464.5 415 66.7
BolC7t43071H Brassica oleracea HOM05D002848 ORTHO05D003043 2.1e-125 453.0 414 67.9
BcaB02g10034 Brassica carinata HOM05D002848 ORTHO05D003043 2.2e-114 416.4 377 72.7
BcaC06g34696 Brassica carinata HOM05D002848 ORTHO05D003043 5.7e-70 268.9 274 64.2
Sp2g30310 Schrenkiella parvula HOM05D002848 ORTHO05D003043 8.0e-64 248.4 454 42.7
Thhalv10004167m.g Eutrema salsugineum HOM05D002848 ORTHO05D003043 4.0e-55 219.5 469 43.1
AL8G45250 Arabidopsis lyrata HOM05D002848 ORTHO05D003043 1.0e-50 204.9 466 39.1
Carub.0008s2822 Capsella rubella HOM05D002848 ORTHO05D003043 2.2e-45 187.2 441 37.9
CARHR281440 Cardamine hirsuta HOM05D002848 ORTHO05D003043 5.4e-44 182.6 453 35.8
AT5G66270 Arabidopsis thaliana HOM05D002848 ORTHO05D003043 3.4e-38 163.3 464 35.3
Aa31LG4G19250 Aethionema arabicum HOM05D002848 ORTHO05D003043 8.3e-29 132.1 506 30.2
Thhalv10010301m.g Eutrema salsugineum HOM05D002848 ORTHO05D003043 2.5e-25 120.6 530 28.1
BcaB01g00544 Brassica carinata HOM05D002848 ORTHO05D003043 1.4e-23 114.8 504 28.2
C08p26460 Brassica napus HOM05D002848 ORTHO05D003043 2.4e-23 114.0 498 28.3
BolC8t50261H Brassica oleracea HOM05D002848 ORTHO05D003043 2.4e-23 114.0 509 27.9
THA.LOC104819181 Tarenaya hassleriana HOM05D002848 ORTHO05D003043 5.2e-23 112.8 521 28.4
AL5G31600 Arabidopsis lyrata HOM05D002848 ORTHO05D003043 1.2e-22 111.7 513 26.9
Carub.0005s1757 Capsella rubella HOM05D002848 ORTHO05D003043 2.6e-22 110.5 519 27.4
BraA09t39883Z Brassica rapa HOM05D002848 ORTHO05D003043 2.4e-20 104.0 531 26.9
Sp5g11040 Schrenkiella parvula HOM05D002848 ORTHO05D003043 2.4e-20 104.0 511 28.2
AT3G51180 Arabidopsis thaliana HOM05D002848 ORTHO05D003043 4.2e-20 103.2 519 25.8
A09p44220 Brassica napus HOM05D002848 ORTHO05D003043 1.6e-19 101.3 525 26.3
Gohir.A11G176500 Gossypium hirsutum HOM05D002848 ORTHO05D003043 3.3e-17 93.6 352 27.8
Gohir.D11G184300 Gossypium hirsutum HOM05D002848 ORTHO05D003043 7.3e-17 92.4 347 28.5
Gorai.007G196000 Gossypium raimondii HOM05D002848 ORTHO05D003043 7.3e-17 92.4 347 28.5
unitig_578.g16090 Utricularia gibba HOM05D002848 ORTHO05D003043 1.4e-12 78.2 299 24.7
Cfa006959 Carpinus fangiana HOM05D002848 ORTHO05D003043 4.2e-12 76.6 479 23.4
Duzib187G1527 Durio zibethinus HOM05D002848 ORTHO05D003043 5.4e-12 76.3 385 26.5
CiPaw.08G132900 Carya illinoinensis HOM05D002848 ORTHO05D003043 9.3e-12 75.5 275 25.5
Haze_03792 Corylus avellana HOM05D002848 ORTHO05D003043 1.2e-11 75.1 337 24.3
Thecc.01G021000 Theobroma cacao HOM05D002848 ORTHO05D003043 2.7e-11 73.9 374 25.4
HanXRQChr12g0367651 Helianthus annuus HOM05D002848 ORTHO05D003043 3.5e-11 73.6 318 26.7
A08p29640 Brassica napus HOM05D002848 ORTHO05D003043 1.0e-10 72.0 456 23.0
BolC8t49614H Brassica oleracea HOM05D002848 ORTHO05D003043 1.0e-10 72.0 444 23.6
Duzib147G0092 Durio zibethinus HOM05D002848 ORTHO05D003043 2.3e-10 70.9 287 27.2
AL1G32590 Arabidopsis lyrata HOM05D002848 ORTHO05D003043 3.0e-10 70.5 464 22.6
BcaC07g39005 Brassica carinata HOM05D002848 ORTHO05D003043 3.0e-10 70.5 444 23.4
C08p19770 Brassica napus HOM05D002848 ORTHO05D003043 3.0e-10 70.5 444 23.4
Nn6g32298 Nelumbo nucifera HOM05D002848 ORTHO05D003043 3.0e-10 70.5 484 22.3
Thhalv10007764m.g Eutrema salsugineum HOM05D002848 ORTHO05D003043 6.6e-10 69.3 450 21.6
Nn5g29271 Nelumbo nucifera HOM05D002848 ORTHO05D003043 1.1e-09 68.6 308 25.6
CsaV3_6G046870 Cucumis sativus L. HOM05D002848 ORTHO05D003043 1.9e-09 67.8 275 26.2
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 2.5e-09 67.4 321 24.6
CDE08G1142 Ceratophyllum demersum HOM05D002848 ORTHO05D003043 3.3e-09 67.0 320 23.8
BraA08t34900Z Brassica rapa HOM05D002848 ORTHO05D003043 4.3e-09 66.6 456 22.4
Carub.0001s1938 Capsella rubella HOM05D002848 ORTHO05D003043 4.3e-09 66.6 458 22.1
MELO3C007883.2 Cucumis melo HOM05D002848 ORTHO05D003043 4.3e-09 66.6 258 26.0
QL06p033603 Quercus lobata HOM05D002848 ORTHO05D003043 4.3e-09 66.6 316 27.2
Potri.002G025100 Populus trichocarpa HOM05D002848 ORTHO05D003043 5.6e-09 66.2 305 24.3
AT1G19860 Arabidopsis thaliana HOM05D002848 ORTHO05D003043 9.6e-09 65.5 312 21.8
Aa31LG7G4370 Aethionema arabicum HOM05D004047 ORTHO05D003043 2.1e-08 64.3 330 23.0
BcaB03g12895 Brassica carinata HOM05D002848 ORTHO05D003043 2.1e-08 64.3 429 23.3
Migut.C00819 Erythranthe guttata HOM05D002848 ORTHO05D003043 2.1e-08 64.3 453 19.6
SHI08568 Sapria himalayana HOM05D002848 ORTHO05D003043 2.1e-08 64.3 311 28.3
Sabra05G0182700 Salix brachista HOM05D002848 ORTHO05D003043 4.8e-08 63.2 339 25.4
Sp1g17660 Schrenkiella parvula HOM05D002848 ORTHO05D003043 4.8e-08 63.2 308 25.0
ECA233G1527 Erigeron canadensis HOM05D002848 ORTHO05D003043 8.1e-08 62.4 311 27.3
Manes.18G016000 Manihot esculenta HOM05D002848 ORTHO05D003043 1.1e-07 62.0 342 23.7
GSVIVG01018802001 Vitis vinifera HOM05D002848 ORTHO05D003043 1.4e-07 61.6 291 24.7
CANSAT25G2982 Cannabis sativa HOM05D002848 ORTHO05D003043 2.4e-07 60.8 476 21.4
ClCG01G020100 Citrullus lanatus HOM05D002848 ORTHO05D003043 2.4e-07 60.8 493 21.5
Peaxi162Scf00064g00626 Petunia axillaris HOM05D002848 ORTHO05D003043 2.4e-07 60.8 266 22.6
Thecc.08G040800 Theobroma cacao HOM05D002848 ORTHO05D003043 2.4e-07 60.8 331 24.2
CARHR020360 Cardamine hirsuta HOM05D002848 ORTHO05D003043 3.1e-07 60.5 328 23.2
Cpa.g.sc26.22 Carica papaya HOM05D000113 ORTHO05D003010 3.1e-07 60.5 352 21.9
Glyma.11G075800 Glycine max HOM05D002848 ORTHO05D003043 3.1e-07 60.5 281 25.3
Glyma.02G049600 Glycine max HOM05D002848 ORTHO05D003043 4.0e-07 60.1 300 25.3
Sed0014337 Sechium edule HOM05D002848 ORTHO05D003043 4.0e-07 60.1 309 27.2
Sed0026959 Sechium edule HOM05D002848 ORTHO05D003043 4.0e-07 60.1 323 26.6
AUR62035722 Chenopodium quinoa HOM05D002848 ORTHO05D003043 5.3e-07 59.7 304 25.0
FvH4_1g11990 Fragaria vesca HOM05D002848 ORTHO05D003043 5.3e-07 59.7 270 23.0
FAN19G0904 Fragaria x ananassa HOM05D002848 ORTHO05D003043 5.3e-07 59.7 270 23.0
Actinidia15403 Actinidia chinensis HOM05D002848 ORTHO05D003043 6.9e-07 59.3 341 22.9
RcHm_v2.0_Chr2g0099611 Rosa chinensis HOM05D002848 ORTHO05D003043 6.9e-07 59.3 276 25.0
Gohir.D06G001300 Gossypium hirsutum HOM05D002848 ORTHO05D003043 9.0e-07 58.9 297 23.6
Nitab4.5_0000577g0100 Nicotiana tabacum HOM05D002848 ORTHO05D003043 9.0e-07 58.9 477 21.4
Gohir.A02G088501 Gossypium hirsutum HOM05D002848 ORTHO05D003043 1.2e-06 58.5 322 22.4
Gorai.005G111400 Gossypium raimondii HOM05D002848 ORTHO05D003043 1.2e-06 58.5 322 22.7
Gorai.010G005700 Gossypium raimondii HOM05D002848 ORTHO05D003043 1.2e-06 58.5 297 23.6
TAR625G0420 Trochodendron aralioides HOM05D002848 ORTHO05D003043 1.2e-06 58.5 348 23.0
Glyma.01G167400 Glycine max HOM05D002848 ORTHO05D003043 2.0e-06 57.8 294 22.8
Gohir.D02G097800 Gossypium hirsutum HOM05D002848 ORTHO05D003043 2.0e-06 57.8 320 23.1
CAN.G847.13 Capsicum annuum HOM05D002848 ORTHO05D003043 2.6e-06 57.4 469 23.7
Potri.005G236300 Populus trichocarpa HOM05D002848 ORTHO05D003043 2.6e-06 57.4 337 23.1
Dinv31824 Davidia involucrata HOM05D002848 ORTHO05D003043 3.4e-06 57.0 341 23.5
MELO3C007890.2 Cucumis melo HOM05D002848 ORTHO05D003043 4.5e-06 56.6 312 23.4
Manes.18G015900 Manihot esculenta HOM05D002848 ORTHO05D003043 4.5e-06 56.6 319 23.8
Nitab4.5_0000192g0040 Nicotiana tabacum HOM05D002848 ORTHO05D003043 4.5e-06 56.6 474 20.9
Actinidia16964 Actinidia chinensis HOM05D002848 ORTHO05D003043 5.8e-06 56.2 277 23.5
EL10Ac1g02255 Beta vulgaris HOM05D002848 ORTHO05D003043 5.8e-06 56.2 490 21.8
TAR381G0737 Trochodendron aralioides HOM05D002848 ORTHO05D003043 5.8e-06 56.2 352 23.9
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 7.6e-06 55.8 336 22.6
Cc10_g01940 Coffea canephora HOM05D002848 ORTHO05D003043 7.6e-06 55.8 466 20.8
COL.COLO4_21931 Corchorus olitorius HOM05D002848 ORTHO05D003043 7.6e-06 55.8 546 20.1
Sabra07G0010500 Salix brachista HOM05D002848 ORTHO05D003043 7.6e-06 55.8 327 20.8
CsaV3_6G046970 Cucumis sativus L. HOM05D002848 ORTHO05D003043 9.9e-06 55.5 318 22.3
Duzib116G0954 Durio zibethinus HOM05D002848 ORTHO05D003043 9.9e-06 55.5 353 23.8
Gorai.002G124700 Gossypium raimondii HOM05D002848 ORTHO05D003043 9.9e-06 55.5 324 22.8
Lj1g0005660 Lotus japonicus HOM05D002848 ORTHO05D003043 9.9e-06 55.5 308 25.6
Medtr1g019120 Medicago truncatula HOM05D002848 ORTHO05D003043 9.9e-06 55.5 423 20.8


User provided reference genes

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