Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p17330 Brassica napus HOM05D003212 ORTHO05D003959 3.9e-41 171.0 85 100.0
A06p01790 Brassica napus HOM05D003212 ORTHO05D003959 1.5e-40 169.1 85 98.8
Migut.B01220 Erythranthe guttata HOM05D003212 ORTHO05D003959 2.6e-13 78.6 49 69.4
A04p05360 Brassica napus HOM05D003212 ORTHO05D003959 3.4e-13 78.2 48 75.0
BraA04t16236Z Brassica rapa HOM05D003212 ORTHO05D003959 3.4e-13 78.2 48 75.0
Thhalv10010334m.g Eutrema salsugineum HOM05D003212 ORTHO05D003959 3.4e-13 78.2 48 75.0
Sp5g07950 Schrenkiella parvula HOM05D003212 ORTHO05D003959 3.4e-13 78.2 48 75.0
Aa31LG1G5360 Aethionema arabicum HOM05D003212 ORTHO05D003959 4.5e-13 77.8 48 72.9
CDE08G1532 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 4.5e-13 77.8 49 69.4
CDE09G0923 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 4.5e-13 77.8 49 69.4
Psat0s1718g0040 Pisum sativum HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 70.8
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 70.8
VMungo1080G0024 Vigna mungo HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 70.8
Cc02_g26670 Coffea canephora HOM05D003212 ORTHO05D003959 7.7e-13 77.0 48 68.8
SGA_v2.0_scaffold232G43508 Striga asiatica HOM05D003212 ORTHO05D003959 7.7e-13 77.0 63 60.3
BcaC02g09067 Brassica carinata HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 72.9
C04p38050 Brassica napus HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 72.9
BolC4t25379H Brassica oleracea HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 72.9
Glyma.13G198700 Glycine max HOM05D003212 ORTHO05D003959 1.0e-12 76.6 49 69.4
Gohir.D05G360100 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 68.8
Gorai.009G432600 Gossypium raimondii HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 68.8
Medtr3g017580 Medicago truncatula HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 70.8
Phvul.005G029300 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 70.8
SGA_v2.0_scaffold124G33627 Striga asiatica HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 70.8
Actinidia21523 Actinidia chinensis HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 68.8
arahy.Tifrunner.gnm1.ann1.28N5NC Arachis hypogaea HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 68.8
arahy.Tifrunner.gnm1.ann1.HRMJ8R Arachis hypogaea HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
arahy.Tifrunner.gnm1.ann1.HVGJ4H Arachis hypogaea HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
arahy.Tifrunner.gnm1.ann1.J24RTT Arachis hypogaea HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 68.8
Glyma.11G154200 Glycine max HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
Hma1.2p1_0384F.1_g141010 Hydrangea macrophylla HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 68.8
Phvul.011G207800 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
Prupe.2G032600 Prunus persica HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
HPP92_003235 Vanilla planifolia HOM05D003212 ORTHO05D003959 1.3e-12 76.3 63 58.7
GSVIVG01000650001 Vitis vinifera HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 68.8
ATR0789G118 Amborella trichopoda HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 66.7
BcaB02g07736 Brassica carinata HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 72.9
BcaC08g44683 Brassica carinata HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 72.9
C06p22180 Brassica napus HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 72.9
BolC6t37404H Brassica oleracea HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 72.9
Ca_18881_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 68.8
Ca_23514_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 68.8
Duzib268G1229 Durio zibethinus HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 68.8
HanXRQChr01g0008251 Helianthus annuus HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 68.8
HanXRQChr13g0406671 Helianthus annuus HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 68.8
Lsat_1_v5_gn_5_157360 Lactuca sativa HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 68.8
TAR369G1042 Trochodendron aralioides HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 68.8
HPP92_003227 Vanilla planifolia HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 68.8
MSTRG.20521 Avicennia marina HOM05D003212 ORTHO05D003959 2.2e-12 75.5 49 67.3
A07p22130 Brassica napus HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 70.8
BraA07t29896Z Brassica rapa HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 70.8
Gohir.D13G149300 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 66.7
Gorai.013G167000 Gossypium raimondii HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 66.7
Peaxi162Scf00010g03311 Petunia axillaris HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 68.8
Peaxi162Scf01010g00217 Petunia axillaris HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 68.8
Sed0011268 Sechium edule HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 70.8
Atru.chr12.1386 Acer truncatum HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
AL5G35520 Arabidopsis lyrata HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
AT3G54470 Arabidopsis thaliana HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
MSTRG.16992 Avicennia marina HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
Ca_10473_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 2.9e-12 75.1 49 67.3
ClCG01G007740 Citrullus lanatus HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
Haze_03071 Corylus avellana HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 66.7
Dinv32034 Davidia involucrata HOM05D003212 ORTHO05D003959 2.9e-12 75.1 63 57.1
Glyma.20G015500 Glycine max HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
Medtr1g025060 Medicago truncatula HOM05D003212 ORTHO05D003959 2.9e-12 75.1 63 57.1
Nn7g36634 Nelumbo nucifera HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 66.7
Oeu003925.2 Olea europaea HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 66.7
Rhsim01G0123800 Rhododendron simsii HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
RcHm_v2.0_Chr1g0323241 Rosa chinensis HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
Thecc.07G075400 Theobroma cacao HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
TPR.G36892 Trifolium pratense HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
VMungo1127G0513 Vigna mungo HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
GSVIVG01000654001 Vitis vinifera HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
Ah.12g062950 Amaranthus hybridus HOM05D003212 ORTHO05D003959 3.8e-12 74.7 49 67.3
AUR62026849 Chenopodium quinoa HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 68.8
AUR62037200 Chenopodium quinoa HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 68.8
COL.COLO4_09453 Corchorus olitorius HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 66.7
ECA248G3712 Erigeron canadensis HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 68.8
Lj3g0024329 Lotus japonicus HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 68.8
MD09G1262400 Malus domestica HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 66.7
Psat5g219440 Pisum sativum HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 68.8
Sabra01G0019400 Salix brachista HOM05D003212 ORTHO05D003959 3.8e-12 74.7 62 51.6
TPR.G17794 Trifolium pratense HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 68.8
CARHR164370 Cardamine hirsuta HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 66.7
FvH4_7g02810 Fragaria vesca HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 66.7
FAN03G0414 Fragaria x ananassa HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 66.7
FAN06G3951 Fragaria x ananassa HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 66.7
Glyma.17G012702 Glycine max HOM05D003212 ORTHO05D003959 5.0e-12 74.3 52 63.5
Gohir.A04G028000 Gossypium hirsutum HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 66.7
Lalb_Chr04g0264051 Lupinus albus HOM05D003212 ORTHO05D003959 5.0e-12 74.3 51 64.7
Lalb_Chr14g0366121 Lupinus albus HOM05D003212 ORTHO05D003959 5.0e-12 74.3 51 64.7
Os01g0951200 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 66.7
Hund15723 Selenicereus undatus HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 66.7
AagrBONN_evm.TU.Sc2ySwM_117.3888 Anthoceros agrestis HOM05D003212 ORTHO05D003959 6.5e-12 73.9 49 65.3
CSS0010475 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 66.7
CSS0011806 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 66.7
Cpa.g.sc223.10 Carica papaya HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 66.7
CsaV3_5G024820 Cucumis sativus L. HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 68.8
Duzib213G0398 Durio zibethinus HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 66.7
Lj3g0002083 Lotus japonicus HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 66.7
Oeu056551.1 Olea europaea HOM05D003212 ORTHO05D003959 6.5e-12 73.9 50 64.0
Os01g0951400 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 64.6
THA.LOC104824191 Tarenaya hassleriana HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 66.7
TWI38G0920 Tripterygium wilfordii HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 66.7
Zm00001eb140940 Zea mays HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 64.6
Atru.chr12.1389 Acer truncatum HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 66.7
CANSAT80G2392 Cannabis sativa HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 68.8
Migut.N01834 Erythranthe guttata HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 68.8
Migut.O00503 Erythranthe guttata HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 68.8
Lalb_Chr03g0032831 Lupinus albus HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 66.7
Nitab4.5_0000893g0050 Nicotiana tabacum HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 66.7
Nitab4.5_0001135g0170 Nicotiana tabacum HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 66.7
Potri.001G026300 Populus trichocarpa HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 66.7
Sopen11g027550 Solanum pennellii HOM05D003212 ORTHO05D003959 8.5e-12 73.6 49 67.3
Aqoxy2G00340 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 66.7
Carub.0005s2109 Capsella rubella HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 68.8
AUR62001997 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 66.7
Ciclev10001014m.g Citrus clementina HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 68.8
Ciclev10004916m.g Citrus clementina HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 68.8
DCAR_006596 Daucus carota HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 68.8
Sed0013182 Sechium edule HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 68.8
Sc11g0006540 Simmondsia chinensis HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 66.7
EL10Ac2g02822 Beta vulgaris HOM05D003212 ORTHO05D003959 1.4e-11 72.8 48 66.7
CiPaw.14G006800 Carya illinoinensis HOM05D003212 ORTHO05D003959 1.4e-11 72.8 48 66.7
FAN10G3499 Fragaria x ananassa HOM05D003212 ORTHO05D003959 1.4e-11 72.8 48 66.7
MD17G1257300 Malus domestica HOM05D003212 ORTHO05D003959 1.4e-11 72.8 48 66.7
PSO384G1532 Papaver somniferum HOM05D003212 ORTHO05D003959 1.4e-11 72.8 48 66.7
PGR031G0586 Punica granatum HOM05D003212 ORTHO05D003959 1.4e-11 72.8 48 64.6
QL04p014524 Quercus lobata HOM05D003212 ORTHO05D003959 1.4e-11 72.8 48 66.7
SalBow5G4847 Salvia bowleyana HOM05D003212 ORTHO05D003959 1.4e-11 72.8 48 64.6
FAN01G2682 Fragaria x ananassa HOM05D003212 ORTHO05D003959 1.9e-11 72.4 48 64.6
Lj7A581T52 Lonicera japonica HOM05D003212 ORTHO05D003959 1.9e-11 72.4 48 64.6
PSO339G4798 Papaver somniferum HOM05D003212 ORTHO05D003959 1.9e-11 72.4 48 64.6
Potri.003G198501 Populus trichocarpa HOM05D003212 ORTHO05D003959 1.9e-11 72.4 48 66.7
Potri.T125906 Populus trichocarpa HOM05D003212 ORTHO05D003959 1.9e-11 72.4 48 66.7
Sabra03G0147800 Salix brachista HOM05D003212 ORTHO05D003959 1.9e-11 72.4 48 66.7
SEGI_29745 Sequoiadendron giganteum HOM05D003212 ORTHO05D003959 1.9e-11 72.4 48 64.6
CAN.G745.39 Capsicum annuum HOM05D003212 ORTHO05D003959 2.5e-11 72.0 48 66.7
Gohir.A13G144600 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.5e-11 72.0 49 61.2
Medtr8g038390 Medicago truncatula HOM05D003212 ORTHO05D003959 2.5e-11 72.0 48 66.7
Solyc11g068830.2 Solanum lycopersicum HOM05D003212 ORTHO05D003959 2.5e-11 72.0 48 66.7
PGSC0003DMG400019620 Solanum tuberosum HOM05D003212 ORTHO05D003959 2.5e-11 72.0 48 66.7
Manes.11G004200 Manihot esculenta HOM05D003212 ORTHO05D003959 3.2e-11 71.6 48 64.6
Mapoly0052s0107 Marchantia polymorpha HOM05D003212 ORTHO05D003959 3.2e-11 71.6 48 62.5
Oeu002655.1 Olea europaea HOM05D003212 ORTHO05D003959 4.2e-11 71.2 48 64.6
Hund13345 Selenicereus undatus HOM05D003212 ORTHO05D003959 4.2e-11 71.2 48 64.6
vmacro12692 Vaccinium macrocarpon HOM05D003212 ORTHO05D003959 2.1e-10 68.9 56 58.9
AUR62003806 Chenopodium quinoa HOM05D003212 ORTHO05D003959 2.7e-10 68.6 48 60.4
Zm00001eb140930 Zea mays HOM05D003212 ORTHO05D003959 3.6e-10 68.2 48 62.5
CBR_g41363 Chara braunii HOM05D003212 ORTHO05D003959 1.8e-09 65.9 48 56.2
PRCOL_00000883 Prasinoderma coloniale HOM05D003212 ORTHO05D003959 3.9e-09 64.7 48 56.2
MELO3C005122.2 Cucumis melo HOM05D003212 ORTHO05D003959 6.7e-09 63.9 48 64.6
SMO259G0031 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 1.5e-08 62.8 63 42.9
Pp3c3_16990 Physcomitrium patens HOM05D003212 ORTHO05D003959 1.9e-08 62.4 47 53.2
Cre01.g048950 Chlamydomonas reinhardtii HOM05D003212 ORTHO05D003959 4.3e-08 61.2 48 50.0
SMO181G0021 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 7.4e-08 60.5 63 41.3


User provided reference genes

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