Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 0.0e+00 1297.7 686 100.0
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 0.0e+00 1289.6 686 99.7
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 0.0e+00 1264.2 686 98.0
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 0.0e+00 1261.9 686 97.8
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 0.0e+00 1249.2 710 94.5
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 0.0e+00 1182.5 687 93.0
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 0.0e+00 1127.9 694 86.3
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 0.0e+00 1124.8 696 87.5
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 0.0e+00 1079.3 699 84.8
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 2.7e-294 1015.0 696 80.9
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 2.0e-284 982.2 745 72.8
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 5.9e-257 891.0 715 69.1
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 1.7e-248 862.8 565 83.0
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 1.2e-228 797.0 713 61.9
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 1.9e-226 789.6 719 60.8
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 1.2e-225 786.9 719 61.1
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 3.0e-224 782.3 722 60.0
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 6.6e-224 781.2 729 59.3
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 1.6e-222 776.5 718 60.7
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 1.8e-221 773.1 708 60.3
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 5.3e-221 771.5 709 60.2
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 5.3e-221 771.5 721 59.6
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 1.5e-220 770.0 710 60.3
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 3.4e-220 768.8 720 59.7
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 4.5e-220 768.5 715 60.4
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 5.8e-220 768.1 737 58.1
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 6.4e-219 764.6 732 57.7
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 1.1e-218 763.8 715 58.9
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 3.2e-218 762.3 728 57.8
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 5.4e-218 761.5 733 57.8
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 2.1e-217 759.6 740 58.5
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 7.9e-217 757.7 735 58.0
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 7.9e-217 757.7 714 59.0
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 1.3e-216 756.9 487 81.9
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 3.3e-215 752.3 719 58.3
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 5.6e-215 751.5 695 61.2
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 5.6e-215 751.5 719 58.1
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 1.3e-214 750.4 722 57.8
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 1.6e-214 750.0 709 58.7
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 2.1e-214 749.6 719 58.1
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 2.1e-214 749.6 713 58.3
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 2.8e-214 749.2 729 57.8
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 3.6e-214 748.8 721 57.7
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 6.2e-214 748.0 727 57.4
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 2.4e-213 746.1 712 57.6
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 6.9e-213 744.6 728 57.6
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 6.9e-213 744.6 702 60.4
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 2.0e-212 743.0 729 57.8
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 2.6e-212 742.7 723 57.3
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 7.6e-212 741.1 702 60.0
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.3e-211 740.3 726 58.1
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.7e-211 740.0 714 58.5
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 2.9e-211 739.2 721 57.0
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 3.8e-211 738.8 730 56.7
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 5.5e-210 734.9 727 58.2
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 5.5e-210 734.9 730 55.8
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.2e-209 733.8 727 58.0
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.1e-209 733.0 726 57.4
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 4.6e-209 731.9 726 57.6
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 3.9e-208 728.8 719 56.5
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 1.1e-207 727.2 724 56.5
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 1.5e-207 726.9 727 56.4
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 2.1e-206 723.0 709 57.3
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 2.8e-206 722.6 702 58.0
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 1.8e-205 719.9 638 61.0
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 4.5e-204 715.3 743 55.5
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 2.2e-203 713.0 714 56.9
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 3.5e-201 705.7 735 55.0
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 5.1e-200 701.8 726 55.1
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 2.1e-198 696.4 802 51.5
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 8.2e-198 694.5 722 54.8
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 1.4e-197 693.7 729 54.6
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 4.1e-197 692.2 721 56.6
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 9.0e-197 691.0 718 55.2
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 9.0e-197 691.0 727 54.7
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 2.6e-196 689.5 679 57.4
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 3.4e-196 689.1 731 53.5
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 7.6e-196 688.0 717 55.1
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 5.0e-195 685.3 729 54.0
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 1.1e-194 684.1 701 54.8
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 1.3e-192 677.2 690 55.5
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 3.0e-192 676.0 726 52.6
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 3.0e-192 676.0 722 54.4
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 9.7e-191 671.0 702 55.3
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 6.3e-190 668.3 742 52.6
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 2.4e-189 666.4 719 54.1
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 3.1e-189 666.0 721 54.2
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 5.3e-189 665.2 718 53.6
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 1.9e-186 656.8 733 51.8
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 7.2e-186 654.8 729 51.0
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 2.2e-182 643.3 732 50.5
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 3.7e-182 642.5 725 51.0
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 3.1e-181 639.4 951 43.8
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 5.5e-178 628.6 936 44.8
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 6.1e-177 625.2 708 51.3
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 2.8e-174 616.3 739 50.5
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 1.6e-172 610.5 599 57.6
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 2.2e-166 590.1 563 58.1
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 5.9e-164 582.0 617 54.3
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 3.6e-161 572.8 618 53.7
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 4.8e-158 562.4 553 58.4
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 1.7e-155 553.9 576 54.7
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 1.9e-154 550.4 584 55.1
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 7.0e-149 531.9 710 47.3
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 6.2e-137 492.3 536 52.2
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 2.5e-122 443.7 795 36.5
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 6.2e-121 439.1 780 38.2
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 2.4e-109 400.6 691 37.9
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 2.4e-96 357.5 298 64.4
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 6.2e-89 332.8 272 63.6
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 7.7e-71 272.7 440 40.7
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 1.1e-64 252.3 421 39.0
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 4.5e-63 246.9 446 40.6
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 3.5e-55 220.7 196 58.7
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 1.4e-48 198.7 296 42.2
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 2.2e-46 191.4 180 55.6
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 1.8e-43 181.8 154 60.4
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 5.2e-43 180.3 155 61.9
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 1.3e-38 165.6 290 39.7
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 1.7e-38 165.2 137 65.7
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 2.0e-34 151.8 129 64.3
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 1.5e-29 135.6 128 53.1
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 4.0e-27 127.5 101 64.4
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 1.7e-22 112.1 112 51.8
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 2.3e-22 111.7 352 31.8
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 2.3e-22 111.7 62 82.3
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 2.0e-18 98.6 113 53.1
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 1.1e-16 92.8 144 43.8
THA.LOC104809559 Tarenaya hassleriana HOM05D003178 ORTHO05D003636 1.2e-07 62.8 137 28.5
AT1G61150 Arabidopsis thaliana HOM05D003178 ORTHO05D003636 6.0e-07 60.5 171 24.0
BcaB04g20319 Brassica carinata HOM05D003178 ORTHO05D003636 1.3e-06 59.3 128 28.9
Zm00001eb009960 Zea mays HOM05D003178 ORTHO05D003636 1.3e-06 59.3 116 29.3
AL2G15200 Arabidopsis lyrata HOM05D003178 ORTHO05D003636 1.7e-06 58.9 122 27.0
BcaC02g10587 Brassica carinata HOM05D003178 ORTHO05D003636 1.7e-06 58.9 128 28.9
A03p66720 Brassica napus HOM05D003178 ORTHO05D003636 1.7e-06 58.9 128 28.9
C04p27190 Brassica napus HOM05D003178 ORTHO05D003636 1.7e-06 58.9 128 28.9
BolC4t24250H Brassica oleracea HOM05D003178 ORTHO05D003636 1.7e-06 58.9 128 28.9
BraA01t02811Z Brassica rapa HOM05D003178 ORTHO05D003636 1.7e-06 58.9 128 28.9
A01p29950 Brassica napus HOM05D003178 ORTHO05D003636 2.3e-06 58.5 128 28.9
Cre01.g029050 Chlamydomonas reinhardtii HOM05D003178 ORTHO05D003636 3.0e-06 58.2 127 32.3
ECA236G3980 Erigeron canadensis HOM05D003178 ORTHO05D003636 3.9e-06 57.8 137 27.0
BcaC06g31837 Brassica carinata HOM05D003178 ORTHO05D003636 6.6e-06 57.0 128 28.1
Peaxi162Scf00031g00823 Petunia axillaris HOM05D003178 ORTHO05D003636 6.6e-06 57.0 124 31.5
BraA01t03125Z Brassica rapa HOM05D003178 ORTHO05D003636 8.6e-06 56.6 97 33.0
Carub.0002s0401 Capsella rubella HOM05D003178 ORTHO05D003636 8.6e-06 56.6 121 26.4
Sp2g03320 Schrenkiella parvula HOM05D003178 ORTHO05D003636 8.6e-06 56.6 128 28.1
SpUn0101_0020 Schrenkiella parvula HOM05D003178 ORTHO05D003636 8.6e-06 56.6 128 28.1


User provided reference genes

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