Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 4.8e-311 1070.5 579 100.0
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 4.1e-275 951.0 577 90.6
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 6.1e-271 937.2 513 99.8
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 7.8e-250 867.1 514 92.2
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 3.4e-245 851.7 518 90.7
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 2.2e-188 662.9 531 77.2
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 8.8e-145 518.1 535 64.3
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 1.3e-143 514.2 525 64.6
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 2.3e-129 466.8 517 62.3
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 1.7e-116 424.1 524 55.2
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 2.3e-116 423.7 521 57.2
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 3.5e-109 399.8 520 55.0
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 1.4e-81 308.1 587 46.8
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.8e-49 201.4 449 42.5
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.8e-49 201.4 449 42.5
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 1.5e-27 128.6 451 34.6
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 3.8e-23 114.0 546 29.1
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 1.1e-22 112.5 545 29.0
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 1.5e-22 112.1 532 28.4
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 4.3e-22 110.5 545 29.0
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 2.8e-21 107.8 546 29.1
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 6.1e-21 106.7 554 28.0
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 8.0e-21 106.3 553 29.7
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 1.4e-20 105.5 484 29.1
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.8e-20 105.1 501 28.7
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.3e-20 104.8 511 27.8
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 3.0e-20 104.4 529 28.7
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 3.0e-20 104.4 550 28.7
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 5.2e-20 103.6 548 28.5
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.2e-19 102.4 488 27.9
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 3.4e-19 100.9 553 27.1
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 7.5e-19 99.8 549 27.1
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 6.4e-18 96.7 517 27.9
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 1.1e-17 95.9 538 27.9
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 1.8e-17 95.1 491 27.9
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 7.0e-17 93.2 321 30.2
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 1.6e-16 92.0 542 26.9
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 1.6e-16 92.0 478 28.2
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 2.7e-16 91.3 511 26.2
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 5.9e-16 90.1 553 27.7
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 1.0e-15 89.4 480 28.5
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 1.0e-15 89.4 557 28.7
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 1.7e-15 88.6 465 28.2
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 2.3e-15 88.2 516 26.7
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 2.3e-15 88.2 547 26.7
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 3.0e-15 87.8 531 29.0
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 3.9e-15 87.4 550 25.8
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 3.9e-15 87.4 471 26.8
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.1e-14 85.9 550 25.6
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.5e-14 85.5 555 27.6
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 4.3e-14 84.0 531 25.4
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.6e-13 82.0 536 26.7
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 2.8e-13 81.3 496 27.6
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 4.7e-13 80.5 462 29.4
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 8.0e-13 79.7 522 26.8
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 1.1e-12 79.3 442 24.9
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 2.3e-12 78.2 543 24.9
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 5.2e-12 77.0 412 27.2
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 5.2e-12 77.0 545 26.2
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 2.6e-11 74.7 408 25.7
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 1.3e-10 72.4 446 27.8
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 3.7e-10 70.9 446 25.8
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 6.4e-10 70.1 490 27.6
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 8.3e-10 69.7 522 24.5
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 1.1e-09 69.3 464 26.7
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.4e-09 68.9 481 27.4
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 1.9e-09 68.6 538 25.7
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 2.4e-09 68.2 315 28.6
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 5.4e-09 67.0 267 29.2
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 9.2e-09 66.2 464 27.2
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.2e-08 65.9 422 26.5
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 2.0e-08 65.1 108 41.7
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 2.0e-08 65.1 512 25.6
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.0e-08 65.1 492 26.2
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 2.7e-08 64.7 109 41.3
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 6.0e-08 63.5 438 26.7
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 6.0e-08 63.5 563 24.5
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 6.0e-08 63.5 129 36.4
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 7.8e-08 63.2 362 27.6
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.0e-07 62.8 101 42.6
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 1.0e-07 62.8 435 27.1
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 1.0e-07 62.8 389 28.0
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 1.7e-07 62.0 461 26.5
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 6.6e-07 60.1 461 28.9
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 8.6e-07 59.7 503 26.0
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 1.5e-06 58.9 405 25.9
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 2.5e-06 58.2 248 34.3
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 2.5e-06 58.2 278 29.9
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 2.5e-06 58.2 524 23.5
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 3.3e-06 57.8 382 25.4
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 3.3e-06 57.8 125 34.4
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 4.3e-06 57.4 412 25.7


User provided reference genes

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