Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p16360 Brassica napus HOM05D003466 ORTHO05D004102 8.0e-199 697.2 433 100.0
BraA07t29363Z Brassica rapa HOM05D003466 ORTHO05D004102 1.0e-182 643.7 433 92.8
BolC7t42929H Brassica oleracea HOM05D003466 ORTHO05D004102 2.0e-165 586.3 434 77.4
C07p24050 Brassica napus HOM05D003466 ORTHO05D004102 2.6e-165 585.9 434 77.2
BcaB03g14395 Brassica carinata HOM05D003466 ORTHO05D004102 3.4e-157 558.9 434 75.1
BcaB08g34851 Brassica carinata HOM05D003466 ORTHO05D004102 2.2e-132 476.5 442 71.9
Sp3g32640 Schrenkiella parvula HOM05D003466 ORTHO05D004102 1.3e-113 414.1 455 62.0
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 3.8e-108 396.0 453 64.9
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 1.4e-107 394.0 454 66.1
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 1.4e-107 394.0 454 66.1
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 4.2e-107 392.5 454 64.1
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 5.5e-107 392.1 451 65.2
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 1.6e-106 390.6 447 65.5
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 2.3e-105 386.7 450 65.8
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 3.9e-105 386.0 448 65.4
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 5.1e-105 385.6 446 65.2
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 2.5e-104 383.3 448 65.0
BcaC04g18745 Brassica carinata HOM05D003466 ORTHO05D004102 2.2e-103 380.2 445 65.4
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 9.0e-102 374.8 454 62.3
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 2.9e-100 369.8 454 60.4
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 6.5e-100 368.6 454 55.7
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 8.5e-100 368.2 453 59.8
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 1.4e-99 367.5 453 63.1
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 1.9e-99 367.1 454 59.9
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 1.2e-98 364.4 454 59.7
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 1.6e-90 337.4 454 52.9
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 2.1e-90 337.0 446 60.8
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 2.1e-90 337.0 446 60.8
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 4.7e-90 335.9 453 52.1
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 2.3e-89 333.6 456 53.7
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 8.2e-87 325.1 451 54.1
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 5.3e-86 322.4 449 50.6
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 5.3e-86 322.4 445 49.4
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 9.1e-86 321.6 447 53.2
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 1.2e-85 321.2 446 53.1
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 6.5e-84 315.5 454 50.9
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 8.5e-84 315.1 452 51.8
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 1.1e-83 314.7 453 54.3
Sabra19G0050200 Salix brachista HOM05D003466 ORTHO05D004102 1.9e-83 313.9 453 55.0
Zm00001eb196610 Zea mays HOM05D003466 ORTHO05D004102 1.9e-83 313.9 446 56.5
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 3.2e-83 313.2 449 48.6
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 3.2e-83 313.2 448 48.9
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 3.2e-83 313.2 455 50.1
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 4.2e-83 312.8 448 50.9
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 1.6e-82 310.8 448 50.2
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 3.6e-82 309.7 451 54.3
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 5.2e-81 305.8 448 49.1
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 6.7e-81 305.4 447 48.5
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 2.0e-80 303.9 450 50.9
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 2.0e-80 303.9 449 47.9
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 2.0e-80 303.9 449 52.6
Peaxi162Scf00673g00432 Petunia axillaris HOM05D003466 ORTHO05D004102 1.7e-79 300.8 446 53.6
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 1.4e-78 297.7 457 47.0
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 1.8e-78 297.4 449 48.8
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 1.8e-78 297.4 452 50.7
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 7.0e-78 295.4 450 48.0
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 9.1e-78 295.0 451 45.0
HanXRQChr01g0026931 Helianthus annuus HOM05D003466 ORTHO05D004102 2.0e-77 293.9 451 54.1
Manes.09G136800 Manihot esculenta HOM05D003466 ORTHO05D004102 5.9e-77 292.4 448 52.7
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 3.8e-76 289.7 448 48.0
Potri.013G065600 Populus trichocarpa HOM05D003466 ORTHO05D004102 5.0e-76 289.3 450 52.2
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 6.5e-76 288.9 462 48.5
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 8.5e-76 288.5 452 45.6
Ciclev10020229m.g Citrus clementina HOM05D003466 ORTHO05D004102 8.5e-76 288.5 452 52.0
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 8.5e-76 288.5 456 46.5
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 1.1e-75 288.1 452 45.4
ECA248G3292 Erigeron canadensis HOM05D003466 ORTHO05D004102 1.9e-75 287.3 452 49.6
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 1.9e-75 287.3 451 47.0
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 3.2e-75 286.6 453 48.8
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 5.5e-75 285.8 453 47.0
Thhalv10023093m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 7.2e-75 285.4 446 50.0
CANSAT25G0815 Cannabis sativa HOM05D003466 ORTHO05D004102 9.4e-75 285.0 466 47.0
CANSAT80G2535 Cannabis sativa HOM05D003466 ORTHO05D004102 9.4e-75 285.0 466 47.0
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 9.4e-75 285.0 455 46.4
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 1.2e-74 284.6 449 45.4
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 2.1e-74 283.9 449 47.7
Nitab4.5_0005883g0020 Nicotiana tabacum HOM05D003466 ORTHO05D004102 2.1e-74 283.9 445 51.5
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 2.7e-74 283.5 448 47.1
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 2.7e-74 283.5 448 48.2
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 4.7e-74 282.7 449 47.2
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 6.1e-74 282.3 455 47.0
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 6.1e-74 282.3 448 47.3
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 8.0e-74 282.0 451 47.7
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 1.8e-73 280.8 448 47.3
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 2.3e-73 280.4 451 47.7
Medtr8g083140 Medicago truncatula HOM05D003466 ORTHO05D004102 2.3e-73 280.4 454 48.2
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 2.3e-73 280.4 450 47.8
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 4.0e-73 279.6 451 47.9
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 4.0e-73 279.6 451 47.9
Gohir.A11G229400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 4.0e-73 279.6 453 47.0
Gohir.D11G241400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 4.0e-73 279.6 453 47.0
Gorai.007G255500 Gossypium raimondii HOM05D003466 ORTHO05D004102 4.0e-73 279.6 453 47.0
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 4.0e-73 279.6 448 47.1
Actinidia38929 Actinidia chinensis HOM05D003466 ORTHO05D004102 5.2e-73 279.3 450 48.0
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 5.2e-73 279.3 451 46.8
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 6.8e-73 278.9 450 48.0
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 2.6e-72 276.9 453 45.9
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 3.4e-72 276.6 454 46.3
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 5.7e-72 275.8 451 45.9
ATR0697G059 Amborella trichopoda HOM05D003466 ORTHO05D004102 1.7e-71 274.2 444 45.9
Thecc.05G242600 Theobroma cacao HOM05D003466 ORTHO05D004102 2.2e-71 273.9 451 48.6
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 2.8e-71 273.5 454 45.8
Cpa.g.sc2.346 Carica papaya HOM05D003466 ORTHO05D004102 6.3e-71 272.3 450 52.4
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 8.3e-71 271.9 448 45.5
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 8.3e-71 271.9 448 45.5
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 1.2e-69 268.1 454 46.0
Duzib128G1823 Durio zibethinus HOM05D003466 ORTHO05D004102 1.6e-69 267.7 450 47.8
Pp3c6_19380 Physcomitrium patens HOM05D003466 ORTHO05D004102 3.5e-69 266.5 451 45.2
Aqoxy1G00514 Aquilegia oxysepala HOM05D003466 ORTHO05D004102 7.7e-69 265.4 449 46.8
CAN.G1076.6 Capsicum annuum HOM05D003466 ORTHO05D004102 1.3e-68 264.6 448 51.8
Hund15775 Selenicereus undatus HOM05D003466 ORTHO05D004102 1.3e-68 264.6 457 48.6
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 1.7e-68 264.2 448 45.1
Duzib106G0204 Durio zibethinus HOM05D003466 ORTHO05D004102 3.8e-68 263.1 449 47.0
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 8.5e-68 261.9 271 53.5
arahy.Tifrunner.gnm1.ann1.WPUK1Z Arachis hypogaea HOM05D003466 ORTHO05D004102 1.1e-67 261.5 462 48.9
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 1.5e-67 261.2 450 45.3
arahy.Tifrunner.gnm1.ann1.GMJ520 Arachis hypogaea HOM05D003466 ORTHO05D004102 2.5e-67 260.4 460 48.7
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 4.2e-67 259.6 457 47.5
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 4.2e-67 259.6 454 45.6
FAN15G1350 Fragaria x ananassa HOM05D003466 ORTHO05D004102 7.2e-67 258.8 448 45.3
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 2.7e-66 256.9 475 40.6
Solyc01g100500.3 Solanum lycopersicum HOM05D003466 ORTHO05D004102 3.6e-66 256.5 445 48.8
Sopen01g044010 Solanum pennellii HOM05D003466 ORTHO05D004102 3.6e-66 256.5 445 49.9
Mapoly0065s0046 Marchantia polymorpha HOM05D003466 ORTHO05D004102 4.7e-66 256.1 455 46.6
Haze_22082 Corylus avellana HOM05D003466 ORTHO05D004102 2.0e-64 250.8 420 45.5
PGSC0003DMG400002770 Solanum tuberosum HOM05D003466 ORTHO05D004102 2.6e-64 250.4 445 49.2
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 4.4e-64 249.6 458 45.6
Nitab4.5_0000368g0060 Nicotiana tabacum HOM05D003466 ORTHO05D004102 4.4e-64 249.6 445 48.8
Sc10g0003130 Simmondsia chinensis HOM05D003466 ORTHO05D004102 7.5e-64 248.8 453 47.0
Sabra15G0065800 Salix brachista HOM05D003466 ORTHO05D004102 1.8e-62 244.2 397 47.4
VMungo0251G3008 Vigna mungo HOM05D003466 ORTHO05D004102 1.2e-61 241.5 424 44.6
SMO364G0903 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 1.6e-61 241.1 461 43.8
Dinv13777 Davidia involucrata HOM05D003466 ORTHO05D004102 5.9e-61 239.2 414 46.6
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.3e-60 238.0 448 45.1
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 3.3e-59 233.4 460 45.2
FAN27G0165 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.6e-58 231.1 342 48.8
Lj1C1073T5 Lonicera japonica HOM05D003466 ORTHO05D004102 3.0e-57 226.9 433 45.5
Lj1C1073T4 Lonicera japonica HOM05D003466 ORTHO05D004102 3.4e-56 223.4 403 45.2
AagrBONN_evm.TU.Sc2ySwM_362.1620 Anthoceros agrestis HOM05D003466 ORTHO05D004102 1.4e-54 218.0 401 47.4
FAN01G2678 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.4e-54 218.0 261 48.7
COL.COLO4_23028 Corchorus olitorius HOM05D003466 ORTHO05D004102 5.4e-54 216.1 420 45.0
Cc00_g13080 Coffea canephora HOM05D003466 ORTHO05D004102 3.5e-53 213.4 452 42.0
SEGI_19842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 1.1e-51 208.4 417 41.2
SEGI_30994 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 1.1e-51 208.4 417 41.2
COL.COLO4_29543 Corchorus olitorius HOM05D003466 ORTHO05D004102 1.4e-49 201.4 427 45.4
GSVIVG01029154001 Vitis vinifera HOM05D003466 ORTHO05D004102 4.0e-49 199.9 451 35.9
FAN15G3298 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.3e-47 194.9 390 40.0
vmacro09137 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 9.2e-46 188.7 276 43.8
Oeu046439.1 Olea europaea HOM05D003466 ORTHO05D004102 1.5e-43 181.4 441 34.9
AUR62042249 Chenopodium quinoa HOM05D003466 ORTHO05D004102 5.6e-43 179.5 408 33.8
COL.COLO4_28634 Corchorus olitorius HOM05D003466 ORTHO05D004102 4.7e-42 176.4 164 57.3
BraA01t03144Z Brassica rapa HOM05D003466 ORTHO05D004102 1.1e-41 175.3 351 46.2
Lj1g0005079 Lotus japonicus HOM05D003466 ORTHO05D004102 5.2e-41 172.9 224 48.2
Oeu012666.1 Olea europaea HOM05D003466 ORTHO05D004102 1.2e-40 171.8 371 39.6
RcHm_v2.0_Chr3g0479581 Rosa chinensis HOM05D003466 ORTHO05D004102 1.1e-38 165.2 422 42.9
QL04p079025 Quercus lobata HOM05D003466 ORTHO05D004102 2.7e-37 160.6 238 43.3
MCO04G495 Micromonas commoda HOM05D003466 ORTHO05D004102 3.5e-37 160.2 260 43.1
Nitab4.5_0000841g0090 Nicotiana tabacum HOM05D003466 ORTHO05D004102 5.6e-35 152.9 362 47.8
Cre05.g232950 Chlamydomonas reinhardtii HOM05D003466 ORTHO05D004102 4.4e-32 143.3 248 42.3
AUR62032478 Chenopodium quinoa HOM05D003466 ORTHO05D004102 4.9e-31 139.8 418 39.5
CARHR265890 Cardamine hirsuta HOM05D003466 ORTHO05D004102 1.6e-29 134.8 283 47.7
Cfa017016 Carpinus fangiana HOM05D003466 ORTHO05D004102 6.0e-29 132.9 199 42.2
Carub.0008s1310 Capsella rubella HOM05D003466 ORTHO05D004102 3.0e-28 130.6 284 48.2
Ah.10g029710 Amaranthus hybridus HOM05D003466 ORTHO05D004102 1.1e-27 128.6 138 50.0
Os02g0294000 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 2.1e-26 124.4 230 39.6
Ah.12g064760 Amaranthus hybridus HOM05D003466 ORTHO05D004102 8.9e-25 119.0 424 38.0
Atru.chr1.1445 Acer truncatum HOM05D003466 ORTHO05D004102 2.6e-24 117.5 125 53.6
SMO236G0087 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 2.9e-23 114.0 126 50.0
PRCOL_00005274 Prasinoderma coloniale HOM05D003466 ORTHO05D004102 3.8e-23 113.6 239 47.7
SMO236G0065 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 3.8e-23 113.6 126 50.0
SMO192G0020 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 9.3e-22 109.0 142 47.2
MD01G1107400 Malus domestica HOM05D003466 ORTHO05D004102 3.3e-19 100.5 231 42.0
HPP92_009864 Vanilla planifolia HOM05D003466 ORTHO05D004102 9.6e-19 99.0 258 42.2
Prupe.2G026300 Prunus persica HOM05D003466 ORTHO05D004102 4.9e-15 86.7 73 58.9
AL8G27400 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 6.4e-15 86.3 102 47.1
HanXRQChr11g0348041 Helianthus annuus HOM05D003466 ORTHO05D004102 8.4e-15 85.9 105 46.7
Rhsim07G0175900 Rhododendron simsii HOM05D003466 ORTHO05D004102 3.2e-14 84.0 97 46.4
CDE06G0675 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 5.4e-14 83.2 114 51.8
Thhalv10009152m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 7.3e-11 72.8 89 49.4
COL.COLO4_23021 Corchorus olitorius HOM05D003466 ORTHO05D000454 9.6e-11 72.4 268 44.0
Thhalv10023970m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 2.8e-10 70.9 88 48.9
Eucgr.L03273 Eucalyptus grandis HOM05D003466 ORTHO05D004102 3.4e-08 63.9 191 43.5


User provided reference genes

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