Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p16240 Brassica napus HOM05D000394 ORTHO05D024082 2.2e-70 268.9 135 100.0
BraA07t29353Z Brassica rapa HOM05D000394 ORTHO05D024082 2.2e-70 268.9 135 100.0
BcaB03g14378 Brassica carinata HOM05D000394 ORTHO05D024082 1.1e-34 150.2 102 82.4
Sp1g17490 Schrenkiella parvula HOM05D000394 ORTHO05D000299 2.1e-33 146.0 163 55.8
A06p15790 Brassica napus HOM05D000394 ORTHO05D000299 2.6e-31 139.0 164 53.0
BraA06t24688Z Brassica rapa HOM05D000394 ORTHO05D000299 2.6e-31 139.0 164 53.0
BolC5t30518H Brassica oleracea HOM05D000394 ORTHO05D000299 4.4e-31 138.3 164 53.0
C05p18100 Brassica napus HOM05D000394 ORTHO05D000299 4.9e-30 134.8 164 52.4
BcaB07g31970 Brassica carinata HOM05D000394 ORTHO05D000299 1.0e-27 127.1 164 50.6
CARHR020170 Cardamine hirsuta HOM05D000394 ORTHO05D000299 1.7e-27 126.3 163 52.8
AT1G19650 Arabidopsis thaliana HOM05D000394 ORTHO05D000299 2.3e-27 125.9 167 50.9
AL1G32370 Arabidopsis lyrata HOM05D000394 ORTHO05D000299 4.6e-20 101.7 87 69.0
Aa31LG7G4260 Aethionema arabicum HOM05D000394 ORTHO05D000299 3.3e-18 95.5 154 44.2
Carub.0001s1919 Capsella rubella HOM05D000394 ORTHO05D000299 2.1e-17 92.8 87 60.9
C07p23860 Brassica napus HOM05D000272 ORTHO05D024082 6.9e-16 87.8 63 79.4
BcaB02g07021 Brassica carinata HOM05D000394 ORTHO05D000299 1.7e-14 83.2 154 40.3
BolC7t42908H Brassica oleracea HOM05D000272 ORTHO05D024082 1.7e-14 83.2 63 77.8
A07p28880 Brassica napus HOM05D000394 ORTHO05D000299 2.9e-14 82.4 154 40.3
BraA07t30530Z Brassica rapa HOM05D000394 ORTHO05D000299 2.9e-14 82.4 154 40.3
THA.LOC104811367 Tarenaya hassleriana HOM05D000394 ORTHO05D000299 3.8e-14 82.0 162 37.0
BcaC08g45583 Brassica carinata HOM05D000394 ORTHO05D000299 6.4e-14 81.3 153 38.6
C06p32660 Brassica napus HOM05D000394 ORTHO05D000299 1.1e-13 80.5 153 38.6
BolC6t38391H Brassica oleracea HOM05D000394 ORTHO05D000299 1.1e-13 80.5 153 38.6
Aa31LG4G5580 Aethionema arabicum HOM05D000394 ORTHO05D000299 2.4e-13 79.3 156 37.8
CARHR068720 Cardamine hirsuta HOM05D000394 ORTHO05D000299 2.4e-13 79.3 152 38.2
AT1G75370 Arabidopsis thaliana HOM05D000394 ORTHO05D000299 3.2e-13 79.0 151 40.4
Sp5g30510 Schrenkiella parvula HOM05D000394 ORTHO05D000299 3.2e-13 79.0 157 38.9
AL2G35300 Arabidopsis lyrata HOM05D000394 ORTHO05D000299 5.5e-13 78.2 157 38.9
Thhalv10018296m.g Eutrema salsugineum HOM05D000394 ORTHO05D000299 5.5e-13 78.2 157 37.6
Carub.0002s2221 Capsella rubella HOM05D000394 ORTHO05D000299 8.7e-11 70.9 157 37.6
Cpa.g.sc106.9 Carica papaya HOM05D000394 ORTHO05D000299 1.5e-10 70.1 103 41.7
Sc18g0004950 Simmondsia chinensis HOM05D000394 ORTHO05D000299 9.6e-10 67.4 69 56.5
Thhalv10007470m.g Eutrema salsugineum HOM05D000394 ORTHO05D000299 1.6e-09 66.6 61 55.7
SalBow6G6222 Salvia bowleyana HOM05D000394 ORTHO05D000299 1.6e-09 66.6 135 37.8
Ah.01g006340 Amaranthus hybridus HOM05D000394 ORTHO05D000299 4.8e-09 65.1 84 47.6
Dinv42042 Davidia involucrata HOM05D000394 ORTHO05D000299 6.2e-09 64.7 146 35.6
ECA240G1392 Erigeron canadensis HOM05D000394 ORTHO05D000299 2.4e-08 62.8 109 40.4
Atru.chr5.3064 Acer truncatum HOM05D000394 ORTHO05D000299 9.0e-08 60.8 83 47.0
MSTRG.27687 Avicennia marina HOM05D000394 ORTHO05D000299 9.0e-08 60.8 89 44.9
MSTRG.5406 Avicennia marina HOM05D000394 ORTHO05D000299 1.2e-07 60.5 69 49.3
CSS0000502 Camellia sinensis var. sinensis HOM05D000394 ORTHO05D000299 1.2e-07 60.5 59 52.5
MELO3C023317.2 Cucumis melo HOM05D000394 ORTHO05D000299 1.5e-07 60.1 177 29.9
Actinidia02228 Actinidia chinensis HOM05D000394 ORTHO05D000299 2.0e-07 59.7 169 32.5
AUR62011290 Chenopodium quinoa HOM05D000394 ORTHO05D000299 2.0e-07 59.7 64 54.7
AUR62016769 Chenopodium quinoa HOM05D000394 ORTHO05D000299 2.0e-07 59.7 64 54.7
Hma1.2p1_0066F.1_g036180 Hydrangea macrophylla HOM05D000394 ORTHO05D000299 2.0e-07 59.7 86 46.5
Psat5g005880 Pisum sativum HOM05D000394 ORTHO05D000299 2.0e-07 59.7 166 31.9
CsaV3_2G014970 Cucumis sativus L. HOM05D000394 ORTHO05D000299 2.6e-07 59.3 85 40.0
Duzib052G1020 Durio zibethinus HOM05D000394 ORTHO05D000299 2.6e-07 59.3 68 51.5
Hma1.2p1_1910F.1_g307250 Hydrangea macrophylla HOM05D000394 ORTHO05D000299 2.6e-07 59.3 83 44.6
Lj5A194G76 Lonicera japonica HOM05D000394 ORTHO05D000299 2.6e-07 59.3 91 41.8
Hund06255 Selenicereus undatus HOM05D000394 ORTHO05D000299 2.6e-07 59.3 82 42.7
MSTRG.16821 Avicennia marina HOM05D000394 ORTHO05D000299 3.4e-07 58.9 84 44.0
ECA240G2485 Erigeron canadensis HOM05D000394 ORTHO05D000299 3.4e-07 58.9 66 51.5
Cfa005044 Carpinus fangiana HOM05D000394 ORTHO05D000299 4.5e-07 58.5 85 44.7
Manes.04G074000 Manihot esculenta HOM05D000394 ORTHO05D000299 4.5e-07 58.5 68 50.0
Rhsim11G0179600 Rhododendron simsii HOM05D000394 ORTHO05D000299 4.5e-07 58.5 63 52.4
Ah.01g019160 Amaranthus hybridus HOM05D000394 ORTHO05D000299 5.8e-07 58.2 168 33.9
arahy.Tifrunner.gnm1.ann1.CN4LCL Arachis hypogaea HOM05D000394 ORTHO05D000299 5.8e-07 58.2 171 32.7
arahy.Tifrunner.gnm1.ann1.LU4RHL Arachis hypogaea HOM05D000394 ORTHO05D000299 5.8e-07 58.2 171 32.7
ClCG11G004200 Citrullus lanatus HOM05D000394 ORTHO05D000299 5.8e-07 58.2 134 31.3
COL.COLO4_25978 Corchorus olitorius HOM05D000394 ORTHO05D000299 5.8e-07 58.2 63 52.4
Duzib041G0691 Durio zibethinus HOM05D000394 ORTHO05D000299 5.8e-07 58.2 63 52.4
Gohir.D02G217600 Gossypium hirsutum HOM05D000394 ORTHO05D000299 5.8e-07 58.2 69 50.7
Gorai.005G245600 Gossypium raimondii HOM05D000394 ORTHO05D000299 5.8e-07 58.2 69 50.7
HanXRQChr12g0376211 Helianthus annuus HOM05D000394 ORTHO05D000299 5.8e-07 58.2 51 58.8
Potri.009G119500 Populus trichocarpa HOM05D000394 ORTHO05D000299 5.8e-07 58.2 69 49.3
PGR042G2761 Punica granatum HOM05D000394 ORTHO05D000299 5.8e-07 58.2 86 43.0
vmacro02082 Vaccinium macrocarpon HOM05D000394 ORTHO05D000299 5.8e-07 58.2 83 45.8
CSS0006938 Camellia sinensis var. sinensis HOM05D000394 ORTHO05D000299 7.6e-07 57.8 52 55.8
Thecc.08G032200 Theobroma cacao HOM05D000394 ORTHO05D000299 7.6e-07 57.8 63 52.4
TPR.G14412 Trifolium pratense HOM05D000394 ORTHO05D000299 7.6e-07 57.8 151 31.8
MSTRG.20066 Avicennia marina HOM05D000394 ORTHO05D000299 1.0e-06 57.4 63 50.8
Dinv23493 Davidia involucrata HOM05D000394 ORTHO05D000299 1.0e-06 57.4 69 49.3
MD10G1070300 Malus domestica HOM05D000394 ORTHO05D000299 1.0e-06 57.4 69 49.3
Nn1g04895 Nelumbo nucifera HOM05D000394 ORTHO05D000299 1.0e-06 57.4 157 31.2
Nn5g29693 Nelumbo nucifera HOM05D000394 ORTHO05D000299 1.0e-06 57.4 161 32.9
Sabra02G0026500 Salix brachista HOM05D000394 ORTHO05D000299 1.0e-06 57.4 159 26.4
THA.LOC104807744 Tarenaya hassleriana HOM05D000394 ORTHO05D000299 1.0e-06 57.4 63 54.0
GSVIVG01023815001 Vitis vinifera HOM05D000394 ORTHO05D000299 1.0e-06 57.4 51 56.9
Prupe.8G091900 Prunus persica HOM05D000394 ORTHO05D000299 1.3e-06 57.0 69 47.8
Sabra09G0092000 Salix brachista HOM05D000394 ORTHO05D000299 1.3e-06 57.0 68 47.1
Thecc.02G081100 Theobroma cacao HOM05D000394 ORTHO05D000299 1.3e-06 57.0 69 47.8
FvH4_2g09500 Fragaria vesca HOM05D000394 ORTHO05D000299 1.7e-06 56.6 69 47.8
FAN20G1766 Fragaria x ananassa HOM05D000394 ORTHO05D000299 1.7e-06 56.6 69 47.8
FAN24G3504 Fragaria x ananassa HOM05D000394 ORTHO05D000299 1.7e-06 56.6 69 47.8
HanXRQChr10g0305021 Helianthus annuus HOM05D000394 ORTHO05D000299 1.7e-06 56.6 69 49.3
Rhsim05G0071800 Rhododendron simsii HOM05D000394 ORTHO05D000299 1.7e-06 56.6 51 54.9
PGSC0003DMG400016909 Solanum tuberosum HOM05D000394 ORTHO05D000299 1.7e-06 56.6 69 49.3
vmacro17470 Vaccinium macrocarpon HOM05D000394 ORTHO05D000299 1.7e-06 56.6 51 54.9
A08p23780 Brassica napus HOM05D000394 ORTHO05D000299 2.2e-06 56.2 162 27.8
BraA08t34330Z Brassica rapa HOM05D000394 ORTHO05D000299 2.2e-06 56.2 162 28.4
Cpa.g.sc99.34 Carica papaya HOM05D000394 ORTHO05D000299 2.2e-06 56.2 165 32.7
ECA234G3339 Erigeron canadensis HOM05D000394 ORTHO05D000299 2.2e-06 56.2 86 44.2
FAN15G1930 Fragaria x ananassa HOM05D000394 ORTHO05D000299 2.2e-06 56.2 69 46.4
Glyma.06G030000 Glycine max HOM05D000394 ORTHO05D000299 2.2e-06 56.2 82 45.1
HanXRQChr03g0073381 Helianthus annuus HOM05D000394 ORTHO05D000299 2.2e-06 56.2 83 41.0
Aqoxy6G01175 Aquilegia oxysepala HOM05D000394 ORTHO05D000299 2.9e-06 55.8 67 44.8
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 2.9e-06 55.8 160 28.8
Ca_15353_v3 Cicer arietinum L. HOM05D000394 ORTHO05D000299 2.9e-06 55.8 65 49.2
Gohir.A03G196400 Gossypium hirsutum HOM05D000394 ORTHO05D000299 2.9e-06 55.8 69 47.8
MD05G1062600 Malus domestica HOM05D000394 ORTHO05D000299 2.9e-06 55.8 69 46.4
Nitab4.5_0002169g0020 Nicotiana tabacum HOM05D000394 ORTHO05D000299 2.9e-06 55.8 69 49.3
Oeu003735.1 Olea europaea HOM05D000394 ORTHO05D000299 2.9e-06 55.8 83 43.4
Sc05g0005400 Simmondsia chinensis HOM05D000394 ORTHO05D000299 2.9e-06 55.8 89 40.4
VMungo1309G1636 Vigna mungo HOM05D000394 ORTHO05D000299 2.9e-06 55.8 81 42.0
arahy.Tifrunner.gnm1.ann1.VU46U9 Arachis hypogaea HOM05D000394 ORTHO05D000299 3.8e-06 55.5 159 28.3
C03p77650 Brassica napus HOM05D000394 ORTHO05D000299 3.8e-06 55.5 160 28.1
BolC3t20022H Brassica oleracea HOM05D000394 ORTHO05D000299 3.8e-06 55.5 160 28.1
Duzib093G1417 Durio zibethinus HOM05D000394 ORTHO05D000299 3.8e-06 55.5 69 46.4
Nitab4.5_0000308g0410 Nicotiana tabacum HOM05D000394 ORTHO05D000299 3.8e-06 55.5 82 43.9
TAR381G0028 Trochodendron aralioides HOM05D000394 ORTHO05D000299 3.8e-06 55.5 71 47.9
TAR381G1302 Trochodendron aralioides HOM05D000394 ORTHO05D000299 3.8e-06 55.5 71 47.9
Ca_18047_v3 Cicer arietinum L. HOM05D000394 ORTHO05D000299 4.9e-06 55.1 182 29.7
DCAR_028970 Daucus carota HOM05D002530 ORTHO05D002802 4.9e-06 55.1 53 54.7
Lsat_1_v5_gn_5_119461 Lactuca sativa HOM05D000394 ORTHO05D000299 4.9e-06 55.1 69 50.7
Peaxi162Scf00016g00516 Petunia axillaris HOM05D000394 ORTHO05D000299 4.9e-06 55.1 69 49.3
QL11p044171 Quercus lobata HOM05D000394 ORTHO05D000299 4.9e-06 55.1 68 44.1
Sed0000907 Sechium edule HOM05D000394 ORTHO05D000299 4.9e-06 55.1 69 46.4
Solyc10g053970.2 Solanum lycopersicum HOM05D000394 ORTHO05D000299 4.9e-06 55.1 69 47.8
Sopen10g023790 Solanum pennellii HOM05D000394 ORTHO05D000299 4.9e-06 55.1 69 47.8
Zm00001eb294580 Zea mays HOM05D000394 ORTHO05D000299 4.9e-06 55.1 69 44.9
CAN.G1058.14 Capsicum annuum HOM05D000394 ORTHO05D000299 6.5e-06 54.7 85 41.2
FAN27G3451 Fragaria x ananassa HOM05D000394 ORTHO05D000299 6.5e-06 54.7 69 46.4
Gohir.A03G079600 Gossypium hirsutum HOM05D000394 ORTHO05D000299 6.5e-06 54.7 63 50.8
Gohir.D02G095500 Gossypium hirsutum HOM05D000394 ORTHO05D000299 6.5e-06 54.7 63 50.8
Gohir.D05G194900 Gossypium hirsutum HOM05D000394 ORTHO05D000299 6.5e-06 54.7 63 49.2
Gorai.005G109200 Gossypium raimondii HOM05D000394 ORTHO05D000299 6.5e-06 54.7 63 50.8
Gorai.009G199800 Gossypium raimondii HOM05D000394 ORTHO05D000299 6.5e-06 54.7 63 49.2
Medtr3g117100 Medicago truncatula HOM05D000394 ORTHO05D000299 6.5e-06 54.7 165 31.5
Os05g0545000 Oryza sativa ssp. japonica HOM05D000394 ORTHO05D000299 6.5e-06 54.7 63 47.6
ATR0585G137 Amborella trichopoda HOM05D000394 ORTHO05D000299 8.4e-06 54.3 68 47.1
EL10Ac9g21695 Beta vulgaris HOM05D000394 ORTHO05D000299 8.4e-06 54.3 68 50.0
Cc00_g15070 Coffea canephora HOM05D000394 ORTHO05D000299 8.4e-06 54.3 51 52.9
Duzib132G0817 Durio zibethinus HOM05D000394 ORTHO05D000299 8.4e-06 54.3 69 47.8
Glyma.17G253000 Glycine max HOM05D000394 ORTHO05D000299 8.4e-06 54.3 82 42.7
Gohir.D13G030900 Gossypium hirsutum HOM05D000394 ORTHO05D000299 8.4e-06 54.3 167 30.5
Lsat_1_v5_gn_9_108160 Lactuca sativa HOM05D000394 ORTHO05D000299 8.4e-06 54.3 60 46.7
Peaxi162Scf00003g01122 Petunia axillaris HOM05D000394 ORTHO05D000299 8.4e-06 54.3 63 50.8
SGA_v2.0_scaffold125G33743 Striga asiatica HOM05D000394 ORTHO05D000299 8.4e-06 54.3 158 31.0
TAR625G1210 Trochodendron aralioides HOM05D000394 ORTHO05D000299 8.4e-06 54.3 64 48.4


User provided reference genes

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