Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 4.3e-104 381.3 191 100.0
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 1.3e-97 359.8 191 92.1
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 3.4e-93 345.1 193 90.7
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 3.7e-92 341.7 193 89.6
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 1.3e-89 333.2 194 88.1
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 2.6e-85 318.9 194 83.0
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 1.1e-83 313.5 193 81.3
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 3.5e-82 308.5 193 80.8
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.3e-81 306.6 198 81.8
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 3.3e-80 302.0 192 80.2
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 4.7e-79 298.1 187 81.3
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 3.1e-70 268.9 144 91.0
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 1.5e-69 266.5 144 91.0
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 6.4e-68 261.2 184 72.8
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 2.1e-66 256.1 191 71.2
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 1.5e-64 250.0 183 70.5
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 7.4e-64 247.7 147 84.4
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 7.6e-61 237.7 187 69.0
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 1.8e-57 226.5 181 68.5
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 1.8e-57 226.5 181 68.5
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 1.7e-52 209.9 182 58.8
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 2.2e-52 209.5 182 59.3
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 6.5e-52 208.0 180 62.2
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 4.6e-50 201.8 179 59.8
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 1.0e-49 200.7 186 58.6
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.8e-49 199.9 175 61.7
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 1.8e-49 199.9 175 61.7
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 5.1e-49 198.4 181 58.0
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.1e-48 197.2 183 59.0
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 3.3e-48 195.7 180 55.6
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 5.7e-48 194.9 181 59.1
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 9.6e-48 194.1 155 65.2
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 9.6e-48 194.1 157 63.7
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 1.3e-47 193.7 188 58.0
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.3e-47 193.7 187 56.1
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.1e-47 193.0 169 59.8
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.1e-47 193.0 178 59.0
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 3.7e-47 192.2 179 59.2
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.7e-47 192.2 157 63.7
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 4.8e-47 191.8 178 59.6
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 6.3e-47 191.4 167 59.3
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 1.1e-46 190.7 165 57.6
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 1.1e-46 190.7 187 56.1
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.4e-46 190.3 193 54.4
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 3.1e-46 189.1 186 54.3
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 3.1e-46 189.1 181 55.2
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 5.3e-46 188.3 185 55.7
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 6.9e-46 188.0 161 57.8
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 9.0e-46 187.6 158 58.2
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 1.2e-45 187.2 191 55.0
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 1.5e-45 186.8 182 55.5
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 1.5e-45 186.8 183 56.8
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.5e-45 186.8 179 58.7
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 2.0e-45 186.4 164 59.8
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 2.0e-45 186.4 166 60.2
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 4.5e-45 185.3 182 54.4
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 4.5e-45 185.3 185 55.7
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 3.8e-44 182.2 167 56.9
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 5.0e-44 181.8 166 56.6
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.1e-43 180.6 157 58.6
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.4e-43 180.3 191 51.8
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 2.5e-43 179.5 146 63.7
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.5e-43 179.5 179 55.9
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 5.5e-43 178.3 149 63.8
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 9.3e-43 177.6 180 53.9
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 1.6e-42 176.8 179 55.3
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.6e-42 176.8 183 50.8
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.1e-42 176.4 162 59.3
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.7e-42 176.0 180 52.8
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 2.7e-42 176.0 182 48.4
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.7e-42 176.0 173 55.5
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 3.6e-42 175.6 160 58.1
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 6.1e-42 174.9 176 53.4
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 6.1e-42 174.9 178 55.1
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 6.1e-42 174.9 171 56.7
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 7.9e-42 174.5 144 61.1
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 7.9e-42 174.5 179 54.7
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 1.8e-41 173.3 160 58.1
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 5.1e-41 171.8 180 54.4
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.1e-40 170.6 160 56.2
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.5e-40 170.2 138 65.9
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 1.5e-40 170.2 174 53.4
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 1.9e-40 169.9 160 56.9
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 2.5e-40 169.5 186 51.6
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 4.3e-40 168.7 132 65.2
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 5.7e-40 168.3 180 51.7
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 1.6e-39 166.8 180 51.7
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 2.2e-39 166.4 140 63.6
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 2.2e-39 166.4 183 51.4
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 2.2e-39 166.4 197 48.7
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.8e-39 166.0 180 48.3
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 2.8e-39 166.0 157 59.2
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 3.7e-39 165.6 155 56.8
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-38 163.3 162 53.7
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-38 163.3 162 53.7
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-38 163.3 162 53.7
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 9.1e-38 161.0 180 47.8
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.2e-37 160.6 183 47.5
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 4.5e-37 158.7 137 64.2
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 4.5e-37 158.7 146 58.2
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 5.0e-36 155.2 164 50.6
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 5.0e-36 155.2 136 58.8
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.1e-35 154.1 263 39.9
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 7.2e-35 151.4 157 49.7
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 7.2e-35 151.4 197 44.2
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 4.6e-34 148.7 169 47.3
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 4.6e-34 148.7 178 44.9
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 1.8e-33 146.7 139 55.4
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 3.9e-33 145.6 131 56.5
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 1.7e-31 140.2 160 48.8
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 4.8e-31 138.7 144 52.8
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 2.9e-28 129.4 124 54.0
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 6.5e-28 128.3 129 55.0
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 7.2e-27 124.8 181 40.3
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 6.7e-25 118.2 155 43.2
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 8.8e-25 117.9 133 47.4
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 2.2e-23 113.2 87 64.4
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 4.8e-23 112.1 144 47.2
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 5.9e-21 105.1 104 55.8
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 6.5e-20 101.7 134 45.5
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 4.2e-19 99.0 115 54.8
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 3.6e-18 95.9 59 74.6
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 8.0e-18 94.7 191 34.0
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 4.0e-17 92.4 92 53.3
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 3.3e-16 89.4 166 38.0
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 3.7e-15 85.9 68 60.3
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 7.0e-14 81.6 85 49.4
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 1.0e-12 77.8 69 52.2
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 4.2e-11 72.4 74 55.4
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 5.2e-09 65.5 75 46.7
C02p33000 Brassica napus HOM05D005768 ORTHO05D041760 1.2e-08 64.3 44 70.5
BolC2t09396H Brassica oleracea HOM05D005768 ORTHO05D041760 1.2e-08 64.3 44 70.5
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 5.7e-08 62.0 149 33.6
BraA07t29281Z Brassica rapa HOM05D005768 ORTHO05D007100 3.7e-07 59.3 26 100.0


User provided reference genes

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