Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 3.9e-134 481.5 246 100.0
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 1.6e-132 476.1 246 98.8
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 1.6e-132 476.1 246 98.8
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 3.6e-132 474.9 246 98.4
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 3.6e-132 474.9 246 98.4
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 1.1e-131 473.4 246 98.4
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 4.2e-128 461.5 246 96.7
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 2.1e-124 449.1 246 93.9
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 2.1e-124 449.1 246 93.9
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.1e-117 426.8 246 88.6
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 1.2e-114 416.8 239 87.9
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 7.6e-114 414.1 246 85.4
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 1.0e-113 413.7 246 86.2
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 1.7e-113 412.9 240 86.2
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 1.6e-108 396.4 235 85.5
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 1.4e-102 376.7 247 78.5
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.4e-94 350.1 235 72.3
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 1.1e-93 347.1 225 73.8
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 1.5e-93 346.7 224 74.6
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 2.0e-93 346.3 224 73.2
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 3.3e-93 345.5 224 74.6
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 5.7e-93 344.7 229 71.2
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 4.8e-92 341.7 229 71.2
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 6.3e-92 341.3 224 70.1
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 6.3e-92 341.3 239 66.9
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 8.2e-92 340.9 223 71.7
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 8.2e-92 340.9 239 67.8
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 8.2e-92 340.9 240 68.8
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 1.1e-91 340.5 229 70.7
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.8e-91 339.7 224 69.6
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 3.1e-91 339.0 224 70.1
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 3.1e-91 339.0 224 72.8
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 3.1e-91 339.0 229 70.7
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 3.1e-91 339.0 240 68.3
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 1.2e-90 337.0 240 66.2
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 2.0e-90 336.3 223 69.5
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 2.6e-90 335.9 229 69.4
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 3.5e-90 335.5 224 71.9
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 3.5e-90 335.5 251 65.3
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 3.5e-90 335.5 240 67.1
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 4.5e-90 335.1 248 66.5
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 7.7e-90 334.3 229 67.7
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.0e-89 334.0 224 69.2
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.0e-89 334.0 224 71.4
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 1.7e-89 333.2 223 70.9
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 2.2e-89 332.8 229 69.4
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 2.2e-89 332.8 230 69.6
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 2.9e-89 332.4 230 68.7
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 3.8e-89 332.0 229 69.4
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 5.0e-89 331.6 229 69.0
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 6.5e-89 331.3 229 68.6
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 8.5e-89 330.9 229 68.6
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 8.5e-89 330.9 224 69.2
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 1.1e-88 330.5 228 68.9
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 1.9e-88 329.7 224 70.5
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 1.9e-88 329.7 228 68.9
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 2.5e-88 329.3 224 68.3
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 2.5e-88 329.3 237 65.4
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 3.2e-88 328.9 228 68.9
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 4.2e-88 328.6 224 68.8
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 7.2e-88 327.8 229 67.2
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 9.4e-88 327.4 228 68.4
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 2.1e-87 326.2 229 67.2
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 2.7e-87 325.9 241 66.4
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 3.6e-87 325.5 228 67.1
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 4.7e-87 325.1 229 67.7
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 4.7e-87 325.1 231 66.2
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 1.8e-86 323.2 227 67.8
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 3.0e-86 322.4 239 67.8
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 3.0e-86 322.4 229 67.7
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 4.0e-86 322.0 249 63.9
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 5.2e-86 321.6 223 68.2
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 8.8e-86 320.9 223 69.1
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 5.7e-85 318.2 223 69.1
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 7.5e-85 317.8 224 68.3
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 9.7e-85 317.4 223 67.7
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 1.7e-84 316.6 224 65.2
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 1.7e-84 316.6 227 68.3
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 2.2e-84 316.2 233 67.8
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 2.8e-84 315.8 225 67.6
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 3.7e-84 315.5 217 68.7
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 4.8e-84 315.1 224 67.0
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 3.1e-83 312.4 231 65.8
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 4.1e-83 312.0 227 66.5
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 3.8e-81 305.4 262 59.9
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 5.5e-80 301.6 226 64.6
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 9.4e-80 300.8 217 66.4
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 2.3e-78 296.2 266 58.6
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 1.6e-74 283.5 196 67.3
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 1.1e-72 277.3 231 63.2
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 9.4e-72 274.2 225 59.6
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.1e-71 273.1 196 66.3
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.2e-69 267.3 221 61.1
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 5.7e-69 265.0 242 56.6
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 2.9e-65 252.7 177 68.9
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 4.7e-63 245.4 231 55.4
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 2.0e-61 240.0 228 52.6
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 1.1e-59 234.2 185 63.8
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 6.6e-57 224.9 150 70.0
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.5e-56 223.8 229 53.3
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 1.9e-56 223.4 233 50.6
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 3.6e-55 219.2 229 51.1
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.2e-50 204.1 156 63.5
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 9.5e-48 194.5 261 41.0
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 8.9e-46 188.0 138 63.0
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 9.2e-43 177.9 125 65.6
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 1.3e-41 174.1 229 42.8
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.7e-41 173.7 200 48.0
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 2.5e-40 169.9 223 39.9
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 1.8e-38 163.7 224 42.4
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 5.8e-37 158.7 198 46.5
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 1.5e-32 144.1 172 45.3
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 1.1e-30 137.9 261 35.6
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 2.7e-26 123.2 80 67.5
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 9.0e-22 108.2 111 50.5
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 3.0e-17 93.2 61 68.9
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 6.2e-15 85.5 57 68.4
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.8e-14 84.0 127 37.8
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 6.4e-12 75.5 56 64.3
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 2.4e-11 73.6 65 55.4
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 1.3e-09 67.8 50 60.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 7.4e-08 62.0 47 51.1
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.3e-07 61.2 205 25.4
C05p20820 Brassica napus HOM05D006717 ORTHO05D008139 6.2e-07 58.9 30 86.7
BolC5t30781H Brassica oleracea HOM05D006717 ORTHO05D008139 8.1e-07 58.5 30 86.7
unitig_46.g18777 Utricularia gibba HOM05D004879 ORTHO05D425869 6.9e-06 55.5 39 66.7
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 9.0e-06 55.1 39 53.8


User provided reference genes

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