Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.8e-146 522.7 291 100.0
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 4.8e-139 498.0 291 95.2
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 7.9e-118 427.6 296 82.8
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 7.9e-118 427.6 290 82.1
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.7e-104 383.3 277 75.5
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 2.9e-104 382.5 277 75.5
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 4.2e-103 378.6 278 75.2
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.6e-102 376.7 274 79.2
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.9e-95 353.2 284 72.5
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 5.5e-95 351.7 297 70.4
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 2.7e-94 349.4 252 77.8
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 3.9e-93 345.5 274 74.8
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 3.7e-91 339.0 281 69.8
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 3.7e-91 339.0 281 69.8
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 5.0e-88 328.6 309 66.7
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.4e-82 310.5 289 64.7
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 2.6e-76 289.7 285 62.8
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 4.3e-55 219.2 245 56.3
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.3e-48 197.6 126 81.0
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 2.3e-48 196.8 126 82.5
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 2.6e-36 156.8 263 44.9
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 5.8e-36 155.6 255 43.9
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 7.6e-36 155.2 120 80.8
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 8.4e-35 151.8 93 84.9
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 8.4e-35 151.8 93 84.9
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.1e-34 151.4 275 41.1
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.9e-34 150.6 259 43.2
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 2.4e-34 150.2 168 54.2
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 1.0e-32 144.8 93 82.8
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 6.6e-32 142.1 268 41.0
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 1.1e-31 141.4 262 42.0
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.5e-31 141.0 149 56.4
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 2.5e-31 140.2 134 59.7
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 2.5e-31 140.2 168 50.0
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.3e-31 139.8 134 59.0
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 5.6e-31 139.0 180 50.6
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 9.6e-31 138.3 264 40.5
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 1.3e-30 137.9 180 50.0
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-30 137.9 134 59.0
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 4.8e-30 136.0 143 53.1
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.2e-30 135.6 145 56.6
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.8e-29 134.0 139 55.4
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 2.4e-29 133.7 129 58.9
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 5.3e-29 132.5 159 49.7
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-28 131.0 121 60.3
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 4.4e-28 129.4 126 60.3
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.8e-28 129.0 121 60.3
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 7.6e-28 128.6 252 40.9
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 4.9e-27 125.9 127 56.7
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 8.4e-27 125.2 196 45.9
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 1.1e-26 124.8 129 56.6
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.1e-26 124.8 193 46.1
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.4e-26 124.4 197 44.7
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.9e-26 124.0 163 49.7
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 4.2e-26 122.9 141 48.9
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 7.1e-26 122.1 160 45.6
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.2e-25 121.3 183 43.7
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.5e-25 119.8 121 53.7
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 4.6e-25 119.4 112 56.2
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.7e-24 117.5 167 48.5
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 2.3e-24 117.1 110 58.2
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 2.3e-24 117.1 114 58.8
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 3.0e-24 116.7 120 53.3
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 8.7e-24 115.2 121 48.8
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 4.3e-23 112.8 182 45.1
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 4.3e-23 112.8 126 51.6
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 1.3e-22 111.3 119 54.6
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.3e-22 111.3 252 36.9
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 2.1e-22 110.5 156 45.5
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 2.8e-22 110.2 118 55.1
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 3.6e-22 109.8 88 64.8
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 6.2e-22 109.0 157 45.2
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 6.2e-22 109.0 245 35.1
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.1e-22 108.6 114 52.6
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.8e-21 107.5 186 39.8
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 5.3e-21 105.9 63 76.2
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.3e-21 105.9 114 53.5
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 9.0e-21 105.1 185 40.0
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.2e-20 104.8 114 52.6
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 2.0e-20 104.0 243 36.2
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.6e-20 102.1 123 48.8
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.6e-20 102.1 124 48.4
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.3e-19 101.3 124 48.4
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 1.3e-19 101.3 97 53.6
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.9e-19 100.1 131 44.3
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.9e-19 100.1 131 44.3
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 2.9e-19 100.1 113 49.6
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 2.9e-19 100.1 72 66.7
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 2.9e-19 100.1 72 66.7
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 4.9e-19 99.4 94 53.2
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 6.4e-19 99.0 132 48.5
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 6.4e-19 99.0 98 56.1
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 8.4e-19 98.6 120 49.2
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.4e-19 98.6 116 46.6
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 1.1e-18 98.2 131 43.5
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 1.4e-18 97.8 119 47.9
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 2.4e-18 97.1 212 35.8
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.2e-18 96.7 131 42.7
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 7.1e-18 95.5 157 43.9
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.2e-17 94.7 116 50.0
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.1e-17 94.0 163 44.2
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 3.5e-17 93.2 146 41.8
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 3.5e-17 93.2 116 49.1
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 6.0e-17 92.4 84 53.6
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 6.0e-17 92.4 82 57.3
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 7.9e-17 92.0 126 43.7
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.9e-16 89.7 126 42.9
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 3.9e-16 89.7 156 42.9
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 5.1e-16 89.4 89 55.1
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 6.7e-16 89.0 148 38.5
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 8.7e-16 88.6 169 41.4
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-15 88.2 211 34.6
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.9e-15 87.4 115 48.7
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.5e-15 87.0 158 39.2
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 3.3e-15 86.7 113 48.7
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 7.4e-15 85.5 108 46.3
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.6e-14 84.3 121 48.8
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 1.6e-14 84.3 81 58.0
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.1e-14 84.0 171 40.4
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 4.8e-14 82.8 141 46.1
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 4.8e-14 82.8 186 34.9
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 4.8e-14 82.8 138 42.8
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 4.8e-14 82.8 122 45.9
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 6.2e-14 82.4 61 63.9
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 6.2e-14 82.4 122 42.6
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.8e-13 80.9 157 39.5
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.4e-13 80.5 157 39.5
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 1.5e-12 77.8 175 35.4
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 5.8e-12 75.9 109 46.8
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 7.6e-12 75.5 182 34.1
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 7.6e-12 75.5 182 36.3
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 4.9e-11 72.8 46 67.4
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.4e-10 71.2 113 38.1
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 1.4e-10 71.2 294 30.6
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 4.2e-10 69.7 113 37.2
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 4.2e-10 69.7 113 41.6
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 9.3e-10 68.6 150 38.0
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 9.3e-10 68.6 172 37.8
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 1.2e-09 68.2 160 38.1
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 2.1e-09 67.4 158 39.9
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 2.1e-09 67.4 88 46.6
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 4.6e-09 66.2 121 43.0
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 6.0e-09 65.9 46 63.0
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 6.7e-08 62.4 42 71.4
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.9e-07 60.8 150 35.3
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 5.7e-07 59.3 146 34.2
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 7.4e-07 58.9 111 41.4
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 2.1e-06 57.4 146 33.6
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 3.7e-06 56.6 155 33.5
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 4.8e-06 56.2 171 30.4
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 6.2e-06 55.8 161 35.4
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 6.2e-06 55.8 161 35.4
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 8.2e-06 55.5 119 37.8


User provided reference genes

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