Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 4.5e-155 551.2 279 100.0
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 2.0e-147 525.8 282 96.1
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 5.4e-132 474.6 279 87.1
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 2.4e-124 449.1 279 82.4
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 8.4e-109 397.5 314 70.7
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 1.5e-105 386.7 315 69.2
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 1.9e-105 386.3 313 69.3
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 4.5e-102 375.2 319 65.8
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 1.8e-98 363.2 316 66.5
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.1e-97 360.5 315 64.4
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 4.8e-96 355.1 315 65.4
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 4.8e-96 355.1 315 65.4
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 4.8e-96 355.1 315 65.4
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 6.9e-95 351.3 316 63.9
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 1.7e-93 346.7 314 64.3
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 8.4e-93 344.4 313 63.3
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.5e-86 323.6 310 61.3
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 6.3e-80 301.6 168 91.1
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 3.8e-69 265.8 320 51.2
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 2.5e-68 263.1 328 50.6
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 2.5e-68 263.1 328 50.6
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 2.5e-68 263.1 328 50.6
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 9.1e-63 244.6 321 49.2
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.0e-62 243.4 320 53.1
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.3e-61 240.7 299 49.8
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 2.2e-61 240.0 325 48.3
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 1.9e-60 236.9 333 46.8
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 3.2e-60 236.1 345 46.7
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.7e-59 233.0 347 46.4
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 1.8e-58 230.3 351 44.7
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 2.3e-58 229.9 347 47.0
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 3.0e-58 229.6 316 48.4
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.2e-57 227.6 331 45.9
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 2.6e-57 226.5 345 45.5
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 4.8e-56 222.2 306 48.4
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 4.8e-56 222.2 312 48.4
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 8.2e-56 221.5 306 48.0
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 1.4e-55 220.7 352 47.2
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 1.8e-55 220.3 308 48.7
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 3.1e-55 219.5 313 48.6
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 4.1e-55 219.2 349 44.4
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-52 211.1 351 42.7
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 2.0e-49 200.3 348 41.1
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 2.0e-49 200.3 348 41.1
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 2.0e-49 200.3 348 41.1
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.3e-48 197.6 351 40.7
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 1.3e-48 197.6 352 40.6
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.7e-48 196.1 351 40.2
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.8e-47 193.7 352 40.6
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 4.1e-47 192.6 347 40.3
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 5.4e-47 192.2 352 40.3
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 7.0e-47 191.8 351 40.5
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 4.5e-46 189.1 346 40.8
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.3e-45 187.6 349 39.0
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.9e-45 186.4 330 39.7
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 3.8e-45 186.0 318 41.8
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 8.6e-45 184.9 338 40.8
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 1.5e-44 184.1 317 40.7
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 1.5e-44 184.1 345 40.3
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 1.9e-44 183.7 352 40.6
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.5e-44 183.3 335 39.4
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 2.5e-44 183.3 337 39.5
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 3.2e-44 183.0 362 36.5
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.2e-44 182.6 339 40.4
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 7.2e-44 181.8 337 40.1
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.6e-43 180.6 342 40.9
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.1e-43 180.3 342 40.6
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 2.1e-43 180.3 359 37.9
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 2.1e-43 180.3 358 39.1
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.8e-43 179.9 336 39.9
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 2.8e-43 179.9 341 39.0
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 3.6e-43 179.5 356 37.9
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 3.6e-43 179.5 337 38.6
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 3.6e-43 179.5 333 38.4
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 1.0e-42 177.9 345 38.0
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 2.3e-42 176.8 346 39.3
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 6.8e-42 175.3 341 41.3
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 8.8e-42 174.9 360 36.7
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 1.2e-41 174.5 338 37.6
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 1.2e-41 174.5 343 37.9
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 9.8e-41 171.4 361 37.7
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 9.8e-41 171.4 360 37.8
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 1.7e-40 170.6 366 37.7
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 3.7e-40 169.5 339 38.1
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 6.3e-40 168.7 354 37.3
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 1.1e-39 167.9 313 40.3
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 1.4e-39 167.5 338 39.3
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.4e-39 167.5 268 40.7
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 3.1e-39 166.4 366 35.5
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 3.1e-39 166.4 308 39.9
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 5.4e-39 165.6 341 38.1
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 5.4e-39 165.6 338 36.7
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 9.2e-39 164.9 308 43.2
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 1.2e-38 164.5 334 37.7
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 2.0e-38 163.7 340 37.1
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 7.8e-38 161.8 303 39.6
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 1.0e-37 161.4 323 38.4
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 1.0e-37 161.4 321 40.8
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 1.7e-37 160.6 262 40.1
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.7e-37 160.6 348 37.1
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.3e-37 160.2 338 36.7
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 3.8e-37 159.5 353 36.8
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 5.0e-37 159.1 314 39.2
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 1.5e-36 157.5 349 33.8
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.5e-36 157.5 336 35.1
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.9e-36 157.1 330 37.0
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 2.5e-36 156.8 360 35.8
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 5.6e-36 155.6 287 38.3
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 7.3e-36 155.2 355 35.5
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 9.5e-36 154.8 342 37.4
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.2e-35 154.5 264 42.4
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 1.6e-35 154.1 350 35.1
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 2.1e-35 153.7 291 40.5
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 3.6e-35 152.9 325 36.3
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 3.6e-35 152.9 363 34.2
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 1.0e-34 151.4 361 34.1
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.4e-34 151.0 361 33.5
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 2.3e-34 150.2 277 39.4
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 6.8e-34 148.7 340 35.0
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.2e-33 147.9 318 36.2
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.2e-33 147.9 334 36.5
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.6e-33 146.7 322 37.0
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 3.4e-33 146.4 316 38.3
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 4.4e-33 146.0 333 38.4
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 5.7e-33 145.6 331 35.0
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 7.5e-33 145.2 311 37.3
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 9.8e-33 144.8 268 38.8
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.3e-32 144.4 318 38.1
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 8.3e-32 141.7 331 35.3
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.4e-31 141.0 313 37.7
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 3.2e-31 139.8 369 33.1
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 5.4e-31 139.0 320 35.0
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 5.4e-31 139.0 337 34.4
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 9.2e-31 138.3 343 33.5
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 3.5e-30 136.3 352 36.4
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 4.6e-30 136.0 334 33.8
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 8.6e-29 131.7 326 33.7
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.5e-28 131.0 310 34.8
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 2.5e-28 130.2 268 38.4
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 7.3e-28 128.6 318 34.3
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 9.5e-28 128.3 337 35.6
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.6e-27 127.5 321 33.3
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 3.6e-27 126.3 332 34.6
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 4.0e-26 122.9 352 33.0
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.5e-25 120.9 333 32.4
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 3.4e-25 119.8 315 31.4
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 5.8e-25 119.0 172 43.0
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 7.5e-25 118.6 308 35.4
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 9.8e-25 118.2 363 32.5
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 2.9e-24 116.7 277 32.5
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 2.9e-24 116.7 294 33.0
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 8.3e-24 115.2 191 41.4
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 7.0e-23 112.1 329 28.9
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.6e-22 110.9 162 45.1
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 3.5e-22 109.8 310 35.5
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 6.0e-22 109.0 210 36.7
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 7.8e-22 108.6 333 31.8
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 5.0e-21 105.9 302 34.8
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 3.3e-20 103.2 321 30.8
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 9.5e-20 101.7 386 29.3
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 1.1e-18 98.2 305 33.1
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 1.8e-18 97.4 81 63.0
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 2.3e-18 97.1 404 28.7
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 8.9e-18 95.1 213 33.8
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-16 91.3 76 67.1
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.3e-16 91.3 323 32.5
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 4.9e-16 89.4 77 62.3
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 6.4e-16 89.0 230 35.2
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 8.3e-16 88.6 51 72.5
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-15 88.2 114 49.1
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 4.4e-09 66.2 170 30.6
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 7.6e-09 65.5 283 26.9
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 2.2e-08 63.9 171 32.2
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 8.4e-08 62.0 193 31.1


User provided reference genes

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