Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p13680 Brassica napus HOM05D008804 ORTHO05D011259 1.6e-55 219.2 108 100.0
BraA07t29120Z Brassica rapa HOM05D008804 ORTHO05D011259 2.8e-52 208.4 104 99.0
A07p13490 Brassica napus HOM05D008804 ORTHO05D011259 6.2e-52 207.2 104 98.1
C07p25990 Brassica napus HOM05D008804 ORTHO05D011259 1.2e-50 203.0 104 97.1
BolC7t43128H Brassica oleracea HOM05D008804 ORTHO05D011259 1.2e-50 203.0 104 97.1
C07p20130 Brassica napus HOM05D008804 ORTHO05D011259 7.6e-50 200.3 104 96.2
BolC7t42534H Brassica oleracea HOM05D008804 ORTHO05D011259 7.6e-50 200.3 104 96.2
BcaB03g14125 Brassica carinata HOM05D008804 ORTHO05D011259 5.6e-45 184.1 104 87.5
Sp1g21290 Schrenkiella parvula HOM05D008804 ORTHO05D011259 1.8e-43 179.1 113 80.5
A08p27940 Brassica napus HOM05D008804 ORTHO05D011259 1.1e-40 169.9 112 77.7
BraA08t34725Z Brassica rapa HOM05D008804 ORTHO05D011259 1.1e-40 169.9 112 77.7
A09p40860 Brassica napus HOM05D008804 ORTHO05D011259 4.2e-40 167.9 113 76.1
BraA09t39578Z Brassica rapa HOM05D008804 ORTHO05D011259 4.2e-40 167.9 113 76.1
C08p22190 Brassica napus HOM05D008804 ORTHO05D011259 5.5e-40 167.5 112 77.7
BolC8t49865H Brassica oleracea HOM05D008804 ORTHO05D011259 5.5e-40 167.5 112 77.7
BcaC05g26296 Brassica carinata HOM05D008804 ORTHO05D011259 9.3e-40 166.8 113 75.2
BcaC07g39224 Brassica carinata HOM05D008804 ORTHO05D011259 9.3e-40 166.8 112 77.7
C05p23110 Brassica napus HOM05D008804 ORTHO05D011259 9.3e-40 166.8 113 75.2
BolC5t31010H Brassica oleracea HOM05D008804 ORTHO05D011259 9.3e-40 166.8 113 75.2
BolC5t31012H Brassica oleracea HOM05D008804 ORTHO05D011259 9.3e-40 166.8 113 75.2
BcaB03g11962 Brassica carinata HOM05D008804 ORTHO05D011259 2.1e-39 165.6 112 76.8
BcaB07g32370 Brassica carinata HOM05D008804 ORTHO05D011259 3.5e-39 164.9 113 74.3
Sp1g21280 Schrenkiella parvula HOM05D008804 ORTHO05D011259 1.3e-25 119.8 113 57.5
A08p27950 Brassica napus HOM05D008804 ORTHO05D011259 6.5e-25 117.5 109 57.8
BraA08t34726Z Brassica rapa HOM05D008804 ORTHO05D011259 6.5e-25 117.5 109 57.8
BcaB03g11961 Brassica carinata HOM05D008804 ORTHO05D011259 8.5e-25 117.1 115 54.8
C08p22180 Brassica napus HOM05D008804 ORTHO05D011259 8.5e-25 117.1 109 57.8
BolC8t49864H Brassica oleracea HOM05D008804 ORTHO05D011259 8.5e-25 117.1 109 57.8
BcaB05g22564 Brassica carinata HOM05D008804 ORTHO05D011259 4.4e-21 104.8 67 74.6
BcaC05g26295 Brassica carinata HOM05D008804 ORTHO05D011259 4.8e-20 101.3 59 79.7
BcaC07g39223 Brassica carinata HOM05D008804 ORTHO05D011259 1.3e-17 93.2 74 64.9
Thhalv10009502m.g Eutrema salsugineum HOM05D008804 ORTHO05D011259 3.2e-16 88.6 112 44.6
AT1G24000 Arabidopsis thaliana HOM05D008804 ORTHO05D011259 4.2e-16 88.2 112 42.0
Sp1g21300 Schrenkiella parvula HOM05D009416 ORTHO05D014496 8.8e-14 80.5 110 45.5
C08p22200 Brassica napus HOM05D009416 ORTHO05D014496 2.0e-13 79.3 120 38.3
BolC8t49866H Brassica oleracea HOM05D009416 ORTHO05D014496 2.6e-13 79.0 118 41.5
AL1G37760 Arabidopsis lyrata HOM05D008804 ORTHO05D011259 7.4e-13 77.4 115 41.7
Sp1g28840 Schrenkiella parvula HOM05D009416 ORTHO05D014496 7.4e-13 77.4 110 42.7
BcaB03g11964 Brassica carinata HOM05D009416 ORTHO05D014496 1.7e-12 76.3 120 35.8
A08p27930 Brassica napus HOM05D009416 ORTHO05D014496 2.2e-12 75.9 120 38.3
BraA08t34724Z Brassica rapa HOM05D009416 ORTHO05D014496 2.2e-12 75.9 120 38.3
Thhalv10009521m.g Eutrema salsugineum HOM05D008804 ORTHO05D011259 6.3e-12 74.3 57 64.9
A07p13480 Brassica napus HOM05D000197 ORTHO05D000114 1.4e-11 73.2 110 38.2
Sp1g21310 Schrenkiella parvula HOM05D008804 ORTHO05D021419 4.5e-10 68.2 130 32.3
Aa31LG7G7810 Aethionema arabicum HOM05D000197 ORTHO05D000114 1.1e-08 63.5 146 34.2
BcaC07g39227 Brassica carinata HOM05D009416 ORTHO05D095777 1.1e-08 63.5 109 40.4
C08p22220 Brassica napus HOM05D009416 ORTHO05D014496 1.1e-08 63.5 109 40.4
BcaB03g11965 Brassica carinata HOM05D009416 ORTHO05D014496 1.5e-08 63.2 110 37.3
COL.COLO4_13135 Corchorus olitorius HOM05D000197 ORTHO05D000114 2.5e-08 62.4 80 38.8
AT1G23910 Arabidopsis thaliana HOM05D008804 ORTHO05D011259 3.2e-08 62.0 63 47.6
Sp1g21330 Schrenkiella parvula HOM05D008804 ORTHO05D021419 3.2e-08 62.0 133 32.3
A07p13670 Brassica napus HOM05D000197 ORTHO05D000114 4.2e-08 61.6 146 29.5
BraA07t29119Z Brassica rapa HOM05D000197 ORTHO05D000114 4.2e-08 61.6 146 29.5
Sp1g21350 Schrenkiella parvula HOM05D000197 ORTHO05D000114 4.2e-08 61.6 87 39.1
BcaB03g14124 Brassica carinata HOM05D000197 ORTHO05D000114 5.5e-08 61.2 146 30.8
BolC8t49867H Brassica oleracea HOM05D009416 ORTHO05D014496 5.5e-08 61.2 109 39.4
BcaC06g35074 Brassica carinata HOM05D000197 ORTHO05D000114 9.4e-08 60.5 146 28.8
Carub.0008s0722 Capsella rubella HOM05D008804 ORTHO05D021419 9.4e-08 60.5 133 33.8
C04p52250 Brassica napus HOM05D009416 ORTHO05D024478 1.2e-07 60.1 109 37.6
BolC4t26801H Brassica oleracea HOM05D009416 ORTHO05D024478 1.2e-07 60.1 109 37.6
BcaC02g08587 Brassica carinata HOM05D009416 ORTHO05D024478 1.6e-07 59.7 109 36.7
C07p20100 Brassica napus HOM05D000197 ORTHO05D000114 2.1e-07 59.3 146 28.8
BolC7t42531H Brassica oleracea HOM05D000197 ORTHO05D000114 2.1e-07 59.3 146 28.8
BraA04t17372Z Brassica rapa HOM05D009416 ORTHO05D024478 2.1e-07 59.3 109 37.6
A04p17490 Brassica napus HOM05D009416 ORTHO05D024478 6.1e-07 57.8 109 36.7
Carub.0001s2344 Capsella rubella HOM05D000197 ORTHO05D000114 8.0e-07 57.4 70 41.4
Thhalv10008991m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 8.0e-07 57.4 146 28.1
BcaC02g08586 Brassica carinata HOM05D009416 ORTHO05D024055 1.0e-06 57.0 113 35.4
BolC4t26802H Brassica oleracea HOM05D009416 ORTHO05D024055 1.0e-06 57.0 113 35.4
CAN.G4322.1 Capsicum annuum HOM05D000197 ORTHO05D000114 1.0e-06 57.0 71 43.7
MELO3C012016.2 Cucumis melo HOM05D000197 ORTHO05D000114 1.8e-06 56.2 64 46.9
arahy.Tifrunner.gnm1.ann1.WH3HWC Arachis hypogaea HOM05D000197 ORTHO05D000114 3.0e-06 55.5 146 28.8
A04p17500 Brassica napus HOM05D009416 ORTHO05D024055 3.0e-06 55.5 110 34.5
BraA04t17373Z Brassica rapa HOM05D009416 ORTHO05D024055 3.0e-06 55.5 110 34.5
PGSC0003DMG400008794 Solanum tuberosum HOM05D000197 ORTHO05D000114 3.0e-06 55.5 71 42.3
AL1G38840 Arabidopsis lyrata HOM05D008804 ORTHO05D021419 4.0e-06 55.1 134 29.9
C04p52260 Brassica napus HOM05D009416 ORTHO05D024055 4.0e-06 55.1 107 35.5
CARHR024320 Cardamine hirsuta HOM05D000197 ORTHO05D000114 4.0e-06 55.1 70 38.6
Dinv24891 Davidia involucrata HOM05D000197 ORTHO05D000114 5.2e-06 54.7 66 43.9
PGSC0003DMG400030243 Solanum tuberosum HOM05D000197 ORTHO05D000114 5.2e-06 54.7 71 40.8
Solyc09g005425.1 Solanum lycopersicum HOM05D000197 ORTHO05D000114 6.7e-06 54.3 71 39.4
Solyc09g005500.3 Solanum lycopersicum HOM05D000197 ORTHO05D000114 6.7e-06 54.3 71 39.4
Sopen09g001410 Solanum pennellii HOM05D000197 ORTHO05D000114 6.7e-06 54.3 71 39.4
Dinv18607 Davidia involucrata HOM05D000197 ORTHO05D000114 8.8e-06 53.9 70 37.1
Dinv26223 Davidia involucrata HOM05D000197 ORTHO05D000114 8.8e-06 53.9 70 37.1
Manes.17G078900 Manihot esculenta HOM05D000197 ORTHO05D000114 8.8e-06 53.9 67 40.3
PGSC0003DMG400016068 Solanum tuberosum HOM05D000197 ORTHO05D000114 8.8e-06 53.9 71 40.8


User provided reference genes

Program Settings