Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 4.8e-88 327.8 164 100.0
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.1e-71 273.5 175 80.6
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.0e-69 266.9 175 78.9
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.0e-69 266.9 175 78.9
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 4.4e-65 251.5 181 73.5
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 6.3e-64 247.7 175 74.9
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 3.5e-62 241.9 183 72.1
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.0e-61 240.4 181 72.4
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.3e-61 240.0 203 66.5
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.9e-61 238.8 182 71.4
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.9e-60 236.1 183 70.5
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.2e-60 235.0 179 71.5
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 5.5e-60 234.6 175 72.0
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 1.6e-59 233.0 179 68.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.3e-58 229.2 179 69.8
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.0e-58 228.8 180 70.6
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.2e-49 200.3 160 69.4
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.5e-49 199.9 179 58.7
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.7e-48 195.3 179 57.0
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.9e-40 168.3 153 64.7
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 7.3e-36 154.5 112 72.3
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 4.4e-33 145.2 173 47.4
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 2.7e-30 136.0 174 47.1
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.7e-30 136.0 182 44.0
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.0e-29 134.0 175 42.9
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.3e-29 133.7 173 43.4
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 7.3e-28 127.9 173 43.4
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.7e-27 125.2 174 45.4
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 4.0e-26 122.1 172 42.4
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.2e-25 120.6 192 39.1
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 1.5e-25 120.2 173 41.6
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 2.0e-25 119.8 173 41.6
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.9e-24 115.9 162 40.7
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 3.7e-24 115.5 161 41.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 4.9e-24 115.2 167 39.5
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 6.4e-24 114.8 165 40.0
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 8.3e-24 114.4 167 38.9
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 1.9e-23 113.2 165 39.4
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 4.1e-23 112.1 164 40.2
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 7.1e-23 111.3 160 38.8
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 7.1e-23 111.3 175 37.1
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 9.2e-23 110.9 165 38.8
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 2.1e-22 109.8 171 38.0
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 2.1e-22 109.8 166 39.2
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 3.5e-22 109.0 159 37.1
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 7.8e-22 107.8 161 37.3
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.3e-21 107.1 162 39.5
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 1.3e-21 107.1 163 36.8
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.3e-21 107.1 167 37.7
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.7e-21 106.7 163 37.4
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.7e-21 106.7 166 38.0
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.0e-21 105.9 161 36.0
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 3.0e-21 105.9 154 40.3
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 3.0e-21 105.9 162 35.8
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 3.9e-21 105.5 162 38.3
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 3.9e-21 105.5 179 38.0
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 5.1e-21 105.1 164 37.8
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 5.1e-21 105.1 163 38.0
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 6.6e-21 104.8 160 37.5
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 6.6e-21 104.8 160 36.9
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 8.6e-21 104.4 163 38.0
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 8.6e-21 104.4 159 39.6
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 8.6e-21 104.4 163 38.7
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 1.1e-20 104.0 165 35.2
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.1e-20 104.0 162 37.0
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 1.5e-20 103.6 173 36.4
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.9e-20 103.2 159 37.1
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.9e-20 103.2 167 37.1
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.5e-20 102.8 166 36.1
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 3.3e-20 102.4 165 37.6
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 4.3e-20 102.1 163 37.4
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 5.6e-20 101.7 162 37.0
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 5.6e-20 101.7 177 35.0
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 7.3e-20 101.3 163 37.4
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 2.1e-19 99.8 173 35.3
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.1e-19 99.8 160 35.6
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 2.1e-19 99.8 160 36.9
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.8e-19 99.4 162 35.8
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.6e-19 99.0 163 35.6
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.7e-19 98.6 158 38.6
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 6.2e-19 98.2 160 35.6
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.1e-19 97.8 158 38.0
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.1e-18 97.4 168 35.1
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.1e-18 97.4 163 34.4
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.4e-18 97.1 174 33.3
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 1.4e-18 97.1 160 35.6
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 3.1e-18 95.9 162 36.4
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 4.0e-18 95.5 167 34.1
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.0e-18 95.5 158 37.3
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 6.8e-18 94.7 158 32.9
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.9e-18 94.4 158 37.3
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 8.9e-18 94.4 161 33.5
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.0e-17 93.2 163 36.2
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 2.0e-17 93.2 197 32.5
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 2.6e-17 92.8 158 32.3
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 2.6e-17 92.8 153 34.0
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.4e-17 92.4 166 36.7
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.6e-17 91.3 160 33.8
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.3e-16 90.5 160 33.8
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.2e-16 89.7 166 34.9
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.2e-16 89.7 164 34.8
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.4e-15 87.0 176 34.7
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 2.4e-15 86.3 195 29.2
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 4.2e-15 85.5 180 31.7
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 5.4e-15 85.1 140 35.0
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 5.4e-15 85.1 117 39.3
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 2.1e-14 83.2 188 30.3
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 2.7e-14 82.8 133 34.6
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 3.5e-14 82.4 129 38.0
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 3.5e-14 82.4 119 37.8
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 2.3e-13 79.7 159 30.8
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 3.0e-13 79.3 119 38.7
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 3.0e-13 79.3 232 26.7
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 3.0e-13 79.3 175 32.0
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 6.6e-13 78.2 123 34.1
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.5e-12 77.0 175 31.4
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 2.5e-12 76.3 158 32.3
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 4.3e-12 75.5 157 28.7
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 4.3e-12 75.5 121 34.7
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 4.3e-12 75.5 124 34.7
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 2.8e-11 72.8 118 37.3
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 6.2e-11 71.6 100 40.0
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 1.1e-10 70.9 112 34.8
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 5.2e-10 68.6 96 36.5
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 9.0e-10 67.8 162 26.5
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.6e-09 66.2 89 34.8
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 4.4e-09 65.5 89 36.0
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 9.9e-09 64.3 94 38.3
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-07 60.8 88 35.2
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 2.4e-07 59.7 45 62.2
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 4.2e-07 58.9 45 62.2
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 4.2e-07 58.9 45 62.2
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 4.2e-07 58.9 60 51.7
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 7.1e-07 58.2 89 30.3
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 9.3e-07 57.8 47 55.3
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 9.3e-07 57.8 48 56.2
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.2e-06 57.4 43 62.8
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 2.1e-06 56.6 43 60.5
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.5e-06 55.8 42 64.3


User provided reference genes

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