Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 1.6e-76 289.3 142 100.0
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 4.5e-74 281.2 142 97.2
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 7.9e-71 270.4 142 95.1
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 7.9e-71 270.4 142 95.1
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 1.3e-70 269.6 142 94.4
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 3.2e-64 248.4 142 87.3
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 3.0e-62 241.9 142 84.5
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 1.5e-61 239.6 141 83.7
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.9e-61 239.2 142 83.1
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 5.7e-61 237.7 142 82.4
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.1e-60 235.7 138 84.8
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 2.8e-60 235.3 142 81.7
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 8.2e-60 233.8 142 81.0
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 2.4e-59 232.3 142 81.0
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 3.1e-59 231.9 142 82.4
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 5.9e-58 227.6 138 83.3
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 7.6e-58 227.3 138 82.6
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 7.7e-50 200.7 116 87.9
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 8.5e-49 197.2 142 71.1
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.0e-46 190.3 141 68.8
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.8e-46 189.5 141 66.7
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 2.3e-46 189.1 142 67.6
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 6.5e-41 171.0 142 60.6
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.1e-40 170.2 141 60.3
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.9e-40 169.5 141 59.6
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 7.2e-40 167.5 142 59.9
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.2e-39 166.8 138 63.8
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 1.0e-38 163.7 142 59.2
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 2.3e-38 162.5 141 58.2
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.6e-37 159.1 142 56.3
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 3.3e-37 158.7 144 58.3
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 5.7e-37 157.9 135 60.0
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 9.7e-37 157.1 116 62.9
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 1.3e-36 156.8 139 56.8
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 6.3e-36 154.5 144 58.3
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 3.1e-35 152.1 138 54.3
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 7.0e-35 151.0 120 60.0
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 7.0e-35 151.0 140 55.7
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 1.2e-34 150.2 120 58.3
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 3.5e-34 148.7 141 56.7
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 4.5e-34 148.3 140 55.7
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 4.5e-34 148.3 140 55.7
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 7.7e-34 147.5 119 63.9
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 7.7e-34 147.5 139 53.2
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 7.7e-34 147.5 139 53.2
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.0e-33 147.1 135 55.6
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 1.3e-33 146.7 120 59.2
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 2.2e-33 146.0 136 55.9
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 5.0e-33 144.8 139 53.2
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 5.0e-33 144.8 120 59.2
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.1e-32 143.7 139 52.5
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 2.5e-32 142.5 156 53.8
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 4.2e-32 141.7 140 57.1
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 9.4e-32 140.6 143 55.2
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 1.2e-31 140.2 142 56.3
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.2e-31 140.2 136 54.4
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 4.7e-31 138.3 122 59.8
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 6.1e-31 137.9 142 54.2
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 6.1e-31 137.9 137 53.3
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.0e-30 137.1 141 54.6
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.4e-30 136.7 141 53.2
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 1.4e-30 136.7 131 55.0
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.4e-30 136.7 143 54.5
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 2.3e-30 136.0 141 54.6
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 4.0e-30 135.2 141 51.1
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 5.2e-30 134.8 143 53.1
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 6.7e-30 134.4 142 55.6
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 1.2e-29 133.7 134 55.2
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 2.0e-29 132.9 101 65.3
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 2.0e-29 132.9 144 50.7
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 2.0e-29 132.9 140 52.1
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 4.4e-29 131.7 139 53.2
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 9.7e-29 130.6 141 46.8
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 1.3e-28 130.2 126 54.8
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.2e-28 129.4 120 57.5
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 2.8e-28 129.0 146 50.0
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 2.8e-28 129.0 117 53.8
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 8.2e-28 127.5 123 54.5
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.1e-27 127.1 119 54.6
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.1e-27 127.1 124 55.6
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.8e-27 126.3 125 53.6
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 1.8e-27 126.3 112 62.5
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 2.4e-27 125.9 131 51.1
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 4.1e-27 125.2 112 61.6
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 2.0e-26 122.9 99 60.6
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 2.7e-26 122.5 121 54.5
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 2.7e-26 122.5 124 56.5
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 3.5e-26 122.1 135 45.9
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 7.7e-26 120.9 143 48.3
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.3e-25 120.2 141 46.1
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 2.2e-25 119.4 140 45.7
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 2.9e-25 119.0 71 74.6
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 3.8e-25 118.6 135 46.7
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 5.0e-25 118.2 60 86.7
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 5.0e-25 118.2 63 84.1
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 6.5e-25 117.9 188 41.0
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 8.5e-25 117.5 110 51.8
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 1.5e-24 116.7 117 51.3
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.9e-24 116.3 102 57.8
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.9e-24 116.3 122 51.6
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 3.2e-24 115.5 120 49.2
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 4.2e-24 115.2 137 46.0
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 4.2e-24 115.2 137 46.0
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 4.2e-24 115.2 109 53.2
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 4.2e-24 115.2 62 79.0
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 4.2e-24 115.2 122 52.5
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 4.2e-24 115.2 115 56.5
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 5.5e-24 114.8 91 60.4
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 5.5e-24 114.8 78 65.4
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 7.2e-24 114.4 65 78.5
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 1.2e-23 113.6 73 72.6
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.6e-23 113.2 116 53.4
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.1e-23 112.8 131 50.4
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 2.7e-23 112.5 62 75.8
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 4.7e-23 111.7 94 58.5
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.0e-22 110.5 121 50.4
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 1.8e-22 109.8 132 43.9
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.0e-22 109.0 61 78.7
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 4.0e-22 108.6 116 55.2
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 4.0e-22 108.6 116 55.2
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 5.2e-22 108.2 101 50.5
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 2.6e-21 105.9 116 50.9
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 3.4e-21 105.5 79 63.3
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.4e-21 105.1 139 45.3
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 9.8e-21 104.0 109 47.7
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 2.8e-20 102.4 177 38.4
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 2.4e-19 99.4 52 82.7
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 2.4e-19 99.4 114 49.1
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 3.1e-19 99.0 61 70.5
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 4.5e-18 95.1 74 64.9
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 4.5e-18 95.1 118 51.7
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.7e-17 93.2 119 46.2
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 7.2e-16 87.8 116 47.4
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 6.1e-15 84.7 118 47.5
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 5.2e-14 81.6 57 64.9
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 8.9e-14 80.9 51 62.7
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.2e-13 80.5 53 62.3
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.5e-13 80.1 55 60.0
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 7.5e-13 77.8 49 65.3
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.1e-11 73.9 61 63.9
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 4.1e-11 72.0 95 45.3
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 4.1e-11 72.0 40 80.0
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 9.2e-11 70.9 136 36.8
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.2e-10 70.5 107 43.0
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 4.5e-10 68.6 100 45.0
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 1.0e-06 57.4 66 42.4
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.4e-06 57.0 72 51.4
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 1.8e-06 56.6 37 70.3
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 4.0e-06 55.5 86 41.9


User provided reference genes

Program Settings