Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 7.2e-156 553.9 286 100.0
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 5.0e-149 531.2 291 96.6
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 2.8e-128 462.2 294 86.1
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 2.8e-128 462.2 294 86.1
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 2.8e-128 462.2 294 86.1
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 1.1e-124 450.3 291 84.2
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 3.1e-106 389.0 296 73.3
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.8e-98 363.2 291 71.1
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.6e-91 339.0 290 67.9
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.5e-84 317.0 293 66.6
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 9.3e-79 297.7 299 62.9
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 6.4e-72 275.0 289 58.1
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.0e-69 267.7 301 54.5
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 5.6e-68 261.9 292 54.8
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 2.1e-67 260.0 290 54.8
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.5e-65 253.8 303 52.5
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.1e-62 243.4 297 52.9
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.3e-61 240.7 300 51.3
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.3e-61 240.7 300 51.3
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 2.3e-61 240.0 300 52.3
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 2.3e-61 240.0 300 52.3
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 2.3e-61 240.0 303 50.5
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 3.3e-60 236.1 301 52.2
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 1.8e-58 230.3 299 50.8
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 5.3e-58 228.8 300 50.3
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.5e-57 227.3 296 51.0
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 2.0e-57 226.9 299 50.2
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 2.6e-57 226.5 299 49.8
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 5.9e-57 225.3 299 49.8
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.2e-56 223.4 297 48.8
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 4.2e-55 219.2 297 48.5
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 3.3e-52 209.5 286 50.3
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 2.8e-35 153.3 309 40.5
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 8.2e-35 151.8 313 38.7
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 3.1e-34 149.8 310 38.1
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.0e-32 144.8 310 37.1
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.2e-32 143.7 311 37.3
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.9e-31 140.6 323 38.1
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.2e-31 139.8 324 39.8
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 5.5e-31 139.0 310 37.7
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.6e-30 137.5 323 39.9
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 4.7e-30 136.0 310 36.8
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.0e-29 134.8 323 39.6
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.0e-29 134.8 311 36.7
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 1.5e-28 131.0 324 38.9
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 2.6e-28 130.2 298 37.6
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 4.4e-28 129.4 336 34.2
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 1.3e-27 127.9 318 36.5
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.7e-27 127.5 294 36.7
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.7e-27 126.3 315 36.5
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.8e-26 124.0 307 33.9
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.3e-24 117.9 303 33.0
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.7e-24 117.5 299 35.5
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 5.0e-24 115.9 299 33.8
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.5e-24 115.5 299 32.8
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 6.5e-24 115.5 299 34.1
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 3.2e-23 113.2 296 34.1
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 3.2e-23 113.2 303 34.0
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 4.2e-23 112.8 287 31.7
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 5.5e-23 112.5 315 34.3
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 2.1e-22 110.5 296 31.8
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.0e-21 108.2 315 32.1
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.4e-21 107.8 309 33.7
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 4.0e-21 106.3 278 36.7
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 5.2e-21 105.9 294 34.0
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 1.2e-20 104.8 306 33.7
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.5e-20 104.4 302 33.4
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 3.4e-20 103.2 311 31.8
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.8e-19 100.1 313 31.0
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 2.8e-19 100.1 307 32.6
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 3.7e-19 99.8 301 31.9
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.1e-18 98.2 322 29.5
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.4e-18 97.8 296 32.8
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.8e-18 97.4 296 33.1
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.8e-18 97.4 320 30.6
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 2.4e-18 97.1 229 36.2
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.1e-18 96.7 265 34.7
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.1e-18 96.7 306 29.4
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.1e-18 96.7 305 30.8
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 4.1e-18 96.3 296 32.1
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 5.4e-18 95.9 287 33.8
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 5.4e-18 95.9 295 31.5
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 7.0e-18 95.5 290 33.4
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 9.1e-18 95.1 178 39.3
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 9.1e-18 95.1 327 30.3
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.2e-17 94.7 311 30.9
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.7e-17 93.6 311 31.5
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.7e-17 93.6 314 29.6
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 4.5e-17 92.8 307 35.8
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 5.9e-17 92.4 301 30.6
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 5.9e-17 92.4 295 30.2
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 1.0e-16 91.7 309 29.4
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.0e-16 91.7 295 30.2
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 2.2e-16 90.5 312 30.1
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.9e-16 90.1 310 31.9
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 2.9e-16 90.1 295 31.5
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 2.9e-16 90.1 300 30.0
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 8.5e-16 88.6 337 29.1
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 8.5e-16 88.6 311 30.9
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.5e-15 87.8 299 32.8
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 1.5e-15 87.8 309 29.4
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.5e-15 87.8 271 30.3
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.9e-15 87.4 312 31.4
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 5.5e-15 85.9 304 33.6
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.2e-15 85.5 309 31.1
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 2.1e-14 84.0 269 30.9
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.6e-14 83.2 298 30.2
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 4.7e-14 82.8 327 30.0
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 4.7e-14 82.8 316 30.7
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.4e-13 81.3 304 31.6
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 2.3e-13 80.5 315 27.6
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 5.2e-13 79.3 305 32.1
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 8.8e-13 78.6 313 31.6
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 2.0e-12 77.4 280 30.4
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 3.4e-12 76.6 307 29.3
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 3.4e-12 76.6 305 29.5
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 2.8e-11 73.6 310 28.1
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 4.9e-11 72.8 144 34.7
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 6.3e-11 72.4 173 33.5
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 8.3e-11 72.0 308 29.2
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.4e-10 71.2 307 28.3
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.8e-10 70.9 307 26.7
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 7.0e-10 68.9 311 29.6
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 3.5e-09 66.6 260 28.1
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.7e-08 64.3 302 28.1
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 1.7e-08 64.3 129 33.3
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.7e-08 64.3 260 28.8
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 2.3e-08 63.9 136 36.8
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 2.9e-08 63.5 133 34.6
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 2.9e-08 63.5 300 27.7
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.9e-08 63.5 260 28.8
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.9e-07 60.8 273 28.9
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.9e-07 60.8 300 30.3
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 4.3e-07 59.7 234 27.8
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.7e-06 56.2 89 42.7


User provided reference genes

Program Settings