Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p11420 Brassica napus HOM05D031114 ORTHO05D028230 4.1e-63 244.6 125 100.0
BraA07t28930Z Brassica rapa HOM05D031114 ORTHO05D028230 7.2e-44 180.6 120 82.5
Carub.0001s2665 Capsella rubella HOM05D000367 ORTHO05D002159 2.1e-14 82.8 121 46.3
BcaC01g00024 Brassica carinata HOM05D000367 ORTHO05D002159 1.0e-13 80.5 121 48.8
C03p74920 Brassica napus HOM05D000367 ORTHO05D002159 1.0e-13 80.5 121 48.8
A08p25770 Brassica napus HOM05D000367 ORTHO05D002159 1.3e-13 80.1 57 73.7
BraA08t34527Z Brassica rapa HOM05D000367 ORTHO05D002159 1.3e-13 80.1 57 73.7
Potri.005G160200 Populus trichocarpa HOM05D000367 ORTHO05D002159 6.6e-13 77.8 128 43.0
BcaB03g12125 Brassica carinata HOM05D000367 ORTHO05D002159 8.6e-13 77.4 57 71.9
Thhalv10007688m.g Eutrema salsugineum HOM05D000367 ORTHO05D002159 2.5e-12 75.9 57 66.7
AL1G41760 Arabidopsis lyrata HOM05D000367 ORTHO05D002159 4.3e-12 75.1 57 68.4
AT1G28210 Arabidopsis thaliana HOM05D000367 ORTHO05D002159 4.3e-12 75.1 121 43.0
CARHR027700 Cardamine hirsuta HOM05D000367 ORTHO05D002159 7.3e-12 74.3 57 70.2
Sp1g24410 Schrenkiella parvula HOM05D000367 ORTHO05D002159 7.3e-12 74.3 119 47.9
CiPaw.07G169800 Carya illinoinensis HOM05D000367 ORTHO05D002159 1.2e-11 73.6 134 38.8
BolC3t19743H Brassica oleracea HOM05D000367 ORTHO05D002159 1.6e-11 73.2 154 41.6
THA.LOC104814212 Tarenaya hassleriana HOM05D000367 ORTHO05D002159 1.6e-11 73.2 129 41.1
arahy.Tifrunner.gnm1.ann1.KY1X5P Arachis hypogaea HOM05D000367 ORTHO05D002159 3.6e-11 72.0 120 42.5
Sabra05G0121500 Salix brachista HOM05D000367 ORTHO05D002159 4.7e-11 71.6 70 54.3
arahy.Tifrunner.gnm1.ann1.15GK1E Arachis hypogaea HOM05D000367 ORTHO05D002159 8.1e-11 70.9 120 41.7
arahy.Tifrunner.gnm1.ann1.V36TPP Arachis hypogaea HOM05D000367 ORTHO05D002159 8.1e-11 70.9 120 41.7
Nn6g34164 Nelumbo nucifera HOM05D000367 ORTHO05D002159 1.1e-10 70.5 127 40.2
ClCG08G011410 Citrullus lanatus HOM05D000367 ORTHO05D002159 1.4e-10 70.1 135 39.3
Haze_22361 Corylus avellana HOM05D000367 ORTHO05D002159 1.8e-10 69.7 82 46.3
CsaV3_2G030000 Cucumis sativus L. HOM05D000367 ORTHO05D002159 1.8e-10 69.7 125 43.2
Lj4A731G50 Lonicera japonica HOM05D000367 ORTHO05D002159 2.3e-10 69.3 73 50.7
Lj1g0018482 Lotus japonicus HOM05D000367 ORTHO05D002159 2.3e-10 69.3 57 61.4
Cc10_g15410 Coffea canephora HOM05D000367 ORTHO05D002159 3.1e-10 68.9 57 61.4
FAN18G0082 Fragaria x ananassa HOM05D000367 ORTHO05D002159 3.1e-10 68.9 57 61.4
Lj4A732G46 Lonicera japonica HOM05D000367 ORTHO05D002159 4.0e-10 68.6 57 59.6
Manes.18G062500 Manihot esculenta HOM05D000367 ORTHO05D002159 4.0e-10 68.6 132 37.9
Ciclev10001008m.g Citrus clementina HOM05D000367 ORTHO05D002159 5.2e-10 68.2 131 38.2
Cfa013715 Carpinus fangiana HOM05D000367 ORTHO05D002159 6.8e-10 67.8 72 51.4
Hund16881 Selenicereus undatus HOM05D000367 ORTHO05D002159 6.8e-10 67.8 128 39.1
FAN08G1792 Fragaria x ananassa HOM05D000367 ORTHO05D002159 8.9e-10 67.4 56 60.7
Glyma.14G178800 Glycine max HOM05D000367 ORTHO05D002159 8.9e-10 67.4 57 61.4
RcHm_v2.0_Chr7g0237761 Rosa chinensis HOM05D000367 ORTHO05D002159 8.9e-10 67.4 134 36.6
Solyc01g081330.3 Solanum lycopersicum HOM05D000367 ORTHO05D002159 8.9e-10 67.4 134 38.8
Cpa.g.sc198.40 Carica papaya HOM05D000367 ORTHO05D002159 2.0e-09 66.2 134 35.1
C07p17220 Brassica napus HOM05D031114 ORTHO05D028230 2.6e-09 65.9 126 45.2
Lalb_Chr10g0102621 Lupinus albus HOM05D000367 ORTHO05D002159 2.6e-09 65.9 125 41.6
Medtr5g065160 Medicago truncatula HOM05D000367 ORTHO05D002159 2.6e-09 65.9 121 40.5
PGR031G2334 Punica granatum HOM05D000367 ORTHO05D002159 2.6e-09 65.9 58 56.9
Sed0003307 Sechium edule HOM05D000367 ORTHO05D002159 2.6e-09 65.9 126 38.9
GSVIVG01009117001 Vitis vinifera HOM05D000367 ORTHO05D002159 2.6e-09 65.9 128 38.3
BolC7t42226H Brassica oleracea HOM05D031114 ORTHO05D028230 3.4e-09 65.5 126 44.4
Sopen01g032910 Solanum pennellii HOM05D000367 ORTHO05D002159 3.4e-09 65.5 134 38.1
Glyma.02G211200 Glycine max HOM05D000367 ORTHO05D002159 4.4e-09 65.1 57 59.6
TPR.G26164 Trifolium pratense HOM05D000367 ORTHO05D002159 4.4e-09 65.1 121 40.5
FvH4_5g36030 Fragaria vesca HOM05D000367 ORTHO05D002159 5.8e-09 64.7 131 37.4
Aa31sc50G80 Aethionema arabicum HOM05D000367 ORTHO05D002159 7.5e-09 64.3 121 41.3
Ca_30620_v3 Cicer arietinum L. HOM05D000367 ORTHO05D002159 7.5e-09 64.3 121 39.7
Eucgr.B00059 Eucalyptus grandis HOM05D000367 ORTHO05D002159 7.5e-09 64.3 122 38.5
Nitab4.5_0001788g0180 Nicotiana tabacum HOM05D000367 ORTHO05D002159 7.5e-09 64.3 58 55.2
Psat2g068840 Pisum sativum HOM05D000367 ORTHO05D002159 7.5e-09 64.3 120 40.8
Atru.chr13.1072 Acer truncatum HOM05D000367 ORTHO05D002159 9.9e-09 63.9 54 57.4
TWI36G0447 Tripterygium wilfordii HOM05D000367 ORTHO05D002159 1.3e-08 63.5 127 38.6
DCAR_019299 Daucus carota HOM05D000367 ORTHO05D002159 1.7e-08 63.2 57 57.9
COL.COLO4_11969 Corchorus olitorius HOM05D000367 ORTHO05D002159 2.2e-08 62.8 120 41.7
MELO3C011058.2 Cucumis melo HOM05D000367 ORTHO05D002159 2.2e-08 62.8 99 44.4
Thecc.08G065600 Theobroma cacao HOM05D000367 ORTHO05D002159 2.2e-08 62.8 121 40.5
MD15G1379600 Malus domestica HOM05D000367 ORTHO05D002159 2.9e-08 62.4 57 56.1
Gohir.D06G033400 Gossypium hirsutum HOM05D000367 ORTHO05D002159 3.7e-08 62.0 119 38.7
Gorai.010G036800 Gossypium raimondii HOM05D000367 ORTHO05D002159 3.7e-08 62.0 119 38.7
VMungo0647G2160 Vigna mungo HOM05D000367 ORTHO05D002159 3.7e-08 62.0 57 56.1
Actinidia29603 Actinidia chinensis HOM05D000367 ORTHO05D002159 4.9e-08 61.6 120 39.2
Aqoxy6G00677 Aquilegia oxysepala HOM05D000367 ORTHO05D002159 4.9e-08 61.6 123 38.2
Duzib093G1106 Durio zibethinus HOM05D000367 ORTHO05D002159 4.9e-08 61.6 121 39.7
Phvul.008G178400 Phaseolus vulgaris HOM05D000367 ORTHO05D002159 8.3e-08 60.8 56 57.1
Prupe.1G525700 Prunus persica HOM05D000367 ORTHO05D002159 1.1e-07 60.5 125 37.6
TWI36G1431 Tripterygium wilfordii HOM05D000367 ORTHO05D002159 1.1e-07 60.5 127 37.8
Duzib116G0323 Durio zibethinus HOM05D000367 ORTHO05D002159 1.4e-07 60.1 121 38.8
ECA232G2978 Erigeron canadensis HOM05D000367 ORTHO05D002159 1.4e-07 60.1 127 34.6
Rhsim07G0208500 Rhododendron simsii HOM05D000367 ORTHO05D002159 1.4e-07 60.1 83 42.2
CAN.G992.11 Capsicum annuum HOM05D000367 ORTHO05D002159 1.9e-07 59.7 134 35.8
Sc23g0000490 Simmondsia chinensis HOM05D000367 ORTHO05D002159 1.9e-07 59.7 129 35.7
Gohir.A06G032676 Gossypium hirsutum HOM05D000367 ORTHO05D002159 2.4e-07 59.3 119 37.8
EL10Ac1g01088 Beta vulgaris HOM05D000367 ORTHO05D002159 5.4e-07 58.2 124 34.7
TAR381G0653 Trochodendron aralioides HOM05D000367 ORTHO05D002159 7.1e-07 57.8 125 36.8
PSO675G3089 Papaver somniferum HOM05D000367 ORTHO05D002159 9.2e-07 57.4 123 35.8
HPP92_004271 Vanilla planifolia HOM05D000367 ORTHO05D002159 9.2e-07 57.4 115 40.9
ATR0022G062 Amborella trichopoda HOM05D000367 ORTHO05D002159 1.6e-06 56.6 127 33.9
AUR62027838 Chenopodium quinoa HOM05D000367 ORTHO05D002159 1.6e-06 56.6 127 34.6
Lsat_1_v5_gn_9_74901 Lactuca sativa HOM05D000367 ORTHO05D002159 2.1e-06 56.2 127 33.1
HanXRQChr06g0170591 Helianthus annuus HOM05D000367 ORTHO05D002159 3.5e-06 55.5 123 31.7
vmacro04694 Vaccinium macrocarpon HOM05D000367 ORTHO05D002159 3.5e-06 55.5 57 47.4
MBI02_g18296_MAGBIO Magnolia biondii HOM05D000367 ORTHO05D002159 6.0e-06 54.7 124 35.5


User provided reference genes

Program Settings