Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p11180 Brassica napus HOM05D007344 ORTHO05D009010 1.0e-134 483.4 240 100.0
BraA07t28908Z Brassica rapa HOM05D007344 ORTHO05D009010 2.2e-134 482.3 240 99.6
C07p16850 Brassica napus HOM05D007344 ORTHO05D009010 1.0e-126 456.8 240 94.6
BolC7t42191H Brassica oleracea HOM05D007344 ORTHO05D009010 2.5e-125 452.2 240 93.8
BcaC06g35373 Brassica carinata HOM05D007344 ORTHO05D009010 3.2e-125 451.8 240 93.8
Sp1g24730 Schrenkiella parvula HOM05D007344 ORTHO05D009010 5.8e-74 281.6 240 65.8
CARHR027960 Cardamine hirsuta HOM05D007344 ORTHO05D009010 9.8e-74 280.8 226 64.6
BcaB07g32467 Brassica carinata HOM05D007344 ORTHO05D009010 4.9e-73 278.5 219 65.8
A09p37590 Brassica napus HOM05D007344 ORTHO05D009010 1.1e-72 277.3 226 63.7
BraA09t39269Z Brassica rapa HOM05D007344 ORTHO05D009010 1.1e-72 277.3 226 64.2
BcaC05g26866 Brassica carinata HOM05D007344 ORTHO05D009010 8.6e-70 267.7 226 61.9
BolC5t31464H Brassica oleracea HOM05D007344 ORTHO05D009010 8.6e-70 267.7 226 61.9
C05p27460 Brassica napus HOM05D007344 ORTHO05D009010 8.9e-67 257.7 233 57.9
Thhalv10009709m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 2.3e-62 243.0 165 75.2
Aa31LG6G10960 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.6e-52 210.3 214 52.8
Aa31sc276G90 Aethionema arabicum HOM05D007344 ORTHO05D009010 3.9e-46 189.1 219 50.2
Aa31LG6G10970 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.1e-45 187.6 226 49.1
THA.LOC104813298 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 2.5e-32 143.3 222 41.0
C06p46460 Brassica napus HOM05D007344 ORTHO05D009010 4.8e-28 129.0 206 41.7
BolC6t39693H Brassica oleracea HOM05D007344 ORTHO05D009010 1.3e-25 120.9 227 38.3
CARHR065170 Cardamine hirsuta HOM05D007344 ORTHO05D009010 1.3e-25 120.9 204 39.7
THA.LOC104814041 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.7e-25 120.6 209 36.8
BcaC08g46676 Brassica carinata HOM05D007344 ORTHO05D009010 2.9e-25 119.8 228 38.2
C06p46520 Brassica napus HOM05D007344 ORTHO05D009010 2.9e-25 119.8 228 38.2
BolC6t39697H Brassica oleracea HOM05D007344 ORTHO05D009010 6.5e-25 118.6 228 37.7
AT1G72290 Arabidopsis thaliana HOM05D007344 ORTHO05D009010 8.5e-25 118.2 225 37.8
Sp5g27360 Schrenkiella parvula HOM05D007344 ORTHO05D009010 1.1e-24 117.9 231 36.8
Thhalv10019095m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 1.9e-24 117.1 229 37.6
Carub.0002s1910 Capsella rubella HOM05D007344 ORTHO05D009010 5.5e-24 115.5 217 35.9
AL2G31960 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 7.2e-24 115.2 235 37.4
Carub.0002s1909 Capsella rubella HOM05D007344 ORTHO05D009010 9.3e-24 114.8 224 39.3
BcaB03g14972 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-23 114.4 225 39.1
BcaB03g14973 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-23 114.4 222 38.3
BcaB03g14974 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-23 114.4 225 39.1
Carub.0002s1914 Capsella rubella HOM05D007344 ORTHO05D009010 2.7e-23 113.2 220 37.3
A07p38410 Brassica napus HOM05D007344 ORTHO05D009010 3.6e-23 112.8 229 37.1
BraA07t31402Z Brassica rapa HOM05D007344 ORTHO05D009010 3.6e-23 112.8 229 37.1
AL2G33090 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 7.9e-23 111.7 226 34.5
BcaB02g07012 Brassica carinata HOM05D007344 ORTHO05D009010 7.9e-23 111.7 222 38.3
THA.LOC104813935 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 6.7e-22 108.6 224 31.2
BolC6t39698H Brassica oleracea HOM05D007344 ORTHO05D009010 4.3e-21 105.9 230 37.8
BcaB03g14970 Brassica carinata HOM05D007344 ORTHO05D009010 5.7e-21 105.5 212 38.2
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 5.7e-21 105.5 229 31.9
AT1G73325 Arabidopsis thaliana HOM05D000535 ORTHO05D000427 7.4e-21 105.1 226 34.1
CARHR066380 Cardamine hirsuta HOM05D000535 ORTHO05D000427 7.4e-21 105.1 222 33.8
THA.LOC104812280 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 7.4e-21 105.1 115 47.0
Thhalv10019129m.g Eutrema salsugineum HOM05D000535 ORTHO05D000427 2.2e-20 103.6 207 35.3
BolC6t39791H Brassica oleracea HOM05D000535 ORTHO05D009010 2.8e-20 103.2 204 33.8
BcaB05g24737 Brassica carinata HOM05D007344 ORTHO05D009010 3.7e-20 102.8 222 34.2
CARHR065180 Cardamine hirsuta HOM05D007344 ORTHO05D009010 3.7e-20 102.8 217 37.3
Aa31LG4G3590 Aethionema arabicum HOM05D000535 ORTHO05D009010 4.8e-20 102.4 202 36.6
BcaB07g32466 Brassica carinata HOM05D007344 ORTHO05D009010 6.3e-20 102.1 73 68.5
Aa31LG4G3600 Aethionema arabicum HOM05D000535 ORTHO05D000427 8.2e-20 101.7 205 35.1
BcaB05g24739 Brassica carinata HOM05D007344 ORTHO05D009010 1.8e-19 100.5 229 35.4
BcaC08g46756 Brassica carinata HOM05D000535 ORTHO05D009010 3.1e-19 99.8 204 33.3
Sp5g28260 Schrenkiella parvula HOM05D000535 ORTHO05D009010 3.1e-19 99.8 219 32.4
BcaB05g24736 Brassica carinata HOM05D007344 ORTHO05D009010 5.3e-19 99.0 222 34.2
AL2G31970 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 9.1e-19 98.2 159 39.0
Carub.0002s1912 Capsella rubella HOM05D007344 ORTHO05D009010 9.1e-19 98.2 217 32.7
BcaB03g15050 Brassica carinata HOM05D000535 ORTHO05D000427 1.5e-18 97.4 204 33.8
BolC6t39696H Brassica oleracea HOM05D007344 ORTHO05D009010 2.0e-18 97.1 195 35.4
BcaC03g15366 Brassica carinata HOM05D007344 ORTHO05D009010 2.6e-18 96.7 229 33.6
C02p29750 Brassica napus HOM05D007344 ORTHO05D009010 2.6e-18 96.7 229 33.6
A07p39300 Brassica napus HOM05D000535 ORTHO05D009010 4.5e-18 95.9 204 32.4
BraA07t31479Z Brassica rapa HOM05D000535 ORTHO05D009010 4.5e-18 95.9 204 32.4
BcaB05g24743 Brassica carinata HOM05D007344 ORTHO05D009010 5.9e-18 95.5 219 35.6
BcaC03g15361 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-17 94.4 211 35.1
BolC2t09022H Brassica oleracea HOM05D007344 ORTHO05D009010 1.3e-17 94.4 217 34.6
BcaB05g24740 Brassica carinata HOM05D007344 ORTHO05D009010 1.7e-17 94.0 219 34.7
C06p47530 Brassica napus HOM05D000535 ORTHO05D009010 1.7e-17 94.0 204 31.9
THA.LOC104812190 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.7e-17 94.0 177 33.3
A02p17860 Brassica napus HOM05D007344 ORTHO05D009010 1.9e-16 90.5 218 33.9
BraA02t06836Z Brassica rapa HOM05D007344 ORTHO05D009010 1.9e-16 90.5 218 33.9
BcaC03g15365 Brassica carinata HOM05D007344 ORTHO05D009010 2.5e-16 90.1 217 34.1
C02p29730 Brassica napus HOM05D007344 ORTHO05D009010 2.5e-16 90.1 217 34.1
BcaC08g46673 Brassica carinata HOM05D007344 ORTHO05D009010 5.5e-16 89.0 227 34.4
C06p46430 Brassica napus HOM05D007344 ORTHO05D009010 5.5e-16 89.0 227 34.4
BcaB03g14976 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-15 87.8 210 32.9
BraA07t31400Z Brassica rapa HOM05D007344 ORTHO05D009010 6.1e-15 85.5 234 33.8
THA.LOC104812189 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 1.0e-14 84.7 219 30.1
BolC6t39700H Brassica oleracea HOM05D007344 ORTHO05D009010 1.4e-14 84.3 239 32.6
BcaC08g46679 Brassica carinata HOM05D007344 ORTHO05D009010 1.8e-14 84.0 239 32.6
C06p46550 Brassica napus HOM05D007344 ORTHO05D009010 1.8e-14 84.0 239 32.6
BcaC08g46677 Brassica carinata HOM05D007344 ORTHO05D009010 7.4e-13 78.6 218 33.0
C06p46530 Brassica napus HOM05D007344 ORTHO05D009010 9.7e-13 78.2 84 50.0
THA.LOC104812195 Tarenaya hassleriana HOM05D000535 ORTHO05D000427 2.8e-12 76.6 160 31.9
BolC2t09020H Brassica oleracea HOM05D007344 ORTHO05D009010 6.3e-12 75.5 190 34.7
BcaB03g14975 Brassica carinata HOM05D007344 ORTHO05D009010 5.3e-11 72.4 235 30.2
Glyma.16G212200 Glycine max HOM05D000535 ORTHO05D000427 1.2e-10 71.2 164 32.9
EL10Ac6g13199 Beta vulgaris HOM05D000535 ORTHO05D000427 1.5e-10 70.9 172 28.5
PSO017G1606 Papaver somniferum HOM05D000535 ORTHO05D000427 1.5e-10 70.9 165 30.9
BcaC08g46678 Brassica carinata HOM05D007344 ORTHO05D009010 2.0e-10 70.5 191 31.9
C06p46540 Brassica napus HOM05D007344 ORTHO05D009010 2.0e-10 70.5 191 31.9
BolC6t39699H Brassica oleracea HOM05D007344 ORTHO05D009010 2.0e-10 70.5 191 31.9
Psat5g029920 Pisum sativum HOM05D000535 ORTHO05D013302 3.4e-10 69.7 209 29.7
PSO170G4576 Papaver somniferum HOM05D000535 ORTHO05D000427 4.5e-10 69.3 163 30.1
Thecc.05G197900 Theobroma cacao HOM05D000535 ORTHO05D000427 1.0e-09 68.2 167 33.5
Manes.01G126100 Manihot esculenta HOM05D000535 ORTHO05D000427 1.3e-09 67.8 158 33.5
COL.COLO4_08721 Corchorus olitorius HOM05D000535 ORTHO05D000427 1.7e-09 67.4 167 31.7
MSTRG.11561 Avicennia marina HOM05D000535 ORTHO05D000427 3.8e-09 66.2 167 31.1
Sabra04G0045700 Salix brachista HOM05D000535 ORTHO05D000427 3.8e-09 66.2 215 28.8
Cc00_g34040 Coffea canephora HOM05D000535 ORTHO05D000427 5.0e-09 65.9 171 29.8
Cc04_g08410 Coffea canephora HOM05D000535 ORTHO05D000427 5.0e-09 65.9 182 28.0
FAN08G0118 Fragaria x ananassa HOM05D000535 ORTHO05D000427 5.0e-09 65.9 167 30.5
AUR62028777 Chenopodium quinoa HOM05D000535 ORTHO05D000427 8.5e-09 65.1 158 30.4
Cc00_g23760 Coffea canephora HOM05D000535 ORTHO05D000427 8.5e-09 65.1 171 29.8
Cc00_g28690 Coffea canephora HOM05D000535 ORTHO05D000427 8.5e-09 65.1 171 29.8
Manes.01G126000 Manihot esculenta HOM05D000535 ORTHO05D000427 8.5e-09 65.1 193 31.1
A07p38420 Brassica napus HOM05D007344 ORTHO05D009010 1.1e-08 64.7 195 31.3
BraA07t31403Z Brassica rapa HOM05D007344 ORTHO05D009010 1.1e-08 64.7 195 31.3
CSS0038986 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 1.9e-08 63.9 164 30.5
CSS0016167 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 2.5e-08 63.5 204 27.9
Cc04_g08380 Coffea canephora HOM05D000535 ORTHO05D000427 4.2e-08 62.8 160 29.4
TAR371G0845 Trochodendron aralioides HOM05D000535 ORTHO05D000427 5.5e-08 62.4 147 31.3
Ah.02g129700 Amaranthus hybridus HOM05D000535 ORTHO05D000427 7.2e-08 62.0 168 28.6
MBI06_g27485_MAGBIO Magnolia biondii HOM05D000535 ORTHO05D000427 7.2e-08 62.0 161 29.8
Cc00_g28730 Coffea canephora HOM05D000535 ORTHO05D000427 1.2e-07 61.2 171 29.2
MBI18_g32029_MAGBIO Magnolia biondii HOM05D000535 ORTHO05D000427 1.6e-07 60.8 149 31.5
Ca_15754_v3 Cicer arietinum L. HOM05D000535 ORTHO05D013302 2.1e-07 60.5 211 27.0
Ciclev10016767m.g Citrus clementina HOM05D000535 ORTHO05D000427 3.6e-07 59.7 130 33.8
CsaV3_2G005020 Cucumis sativus L. HOM05D000535 ORTHO05D000427 4.7e-07 59.3 121 36.4
AUR62028778 Chenopodium quinoa HOM05D000535 ORTHO05D000427 6.1e-07 58.9 159 27.0
BraA07t31310Z Brassica rapa HOM05D008834 ORTHO05D011314 1.0e-06 58.2 151 31.8
CAN.G765.33 Capsicum annuum HOM05D000535 ORTHO05D011982 1.4e-06 57.8 178 27.5
CAN.G765.29 Capsicum annuum HOM05D000535 ORTHO05D011982 2.3e-06 57.0 168 28.6
ClCG02G016010 Citrullus lanatus HOM05D000535 ORTHO05D000427 2.3e-06 57.0 221 28.1
Lj9P411T41 Lonicera japonica HOM05D000535 ORTHO05D000427 2.3e-06 57.0 163 30.1
Dinv08278 Davidia involucrata HOM05D000535 ORTHO05D000427 3.0e-06 56.6 173 30.1
PGR142G1324 Punica granatum HOM05D000535 ORTHO05D000427 3.0e-06 56.6 199 29.6
Cc04_g08350 Coffea canephora HOM05D000535 ORTHO05D000427 3.9e-06 56.2 173 28.3
CiPaw.11G154900 Carya illinoinensis HOM05D000535 ORTHO05D000427 6.7e-06 55.5 155 29.0
Lj6P734T41 Lonicera japonica HOM05D000535 ORTHO05D000427 6.7e-06 55.5 141 30.5
Medtr8g461050 Medicago truncatula HOM05D000535 ORTHO05D000427 6.7e-06 55.5 141 29.1
Solyc04g150105.1 Solanum lycopersicum HOM05D000535 ORTHO05D000427 6.7e-06 55.5 172 28.5
TAR629G0176 Trochodendron aralioides HOM05D000535 ORTHO05D000427 6.7e-06 55.5 164 28.0
ECA233G2609 Erigeron canadensis HOM05D021928 ORTHO05D015640 8.8e-06 55.1 127 33.9
Nitab4.5_0003884g0060 Nicotiana tabacum HOM05D000535 ORTHO05D000427 8.8e-06 55.1 132 31.8
Nitab4.5_0012105g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 8.8e-06 55.1 167 30.5
VMungo0464G1765 Vigna mungo HOM05D010343 ORTHO05D011300 8.8e-06 55.1 113 34.5
VMungo1127G0967 Vigna mungo HOM05D000535 ORTHO05D000427 8.8e-06 55.1 160 25.6


User provided reference genes

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