Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1996.5 1001 100.0
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1992.2 1001 99.8
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1983.8 1001 99.2
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1982.2 1001 99.1
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1974.1 1001 98.8
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1937.9 1006 96.4
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1875.9 1007 93.4
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1857.0 1007 92.8
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1818.9 1010 90.5
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1818.9 1003 91.1
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1815.0 1003 90.7
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1812.0 1008 91.1
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1690.2 1006 84.9
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1682.2 1018 84.2
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1487.2 1014 74.5
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1485.7 1011 73.4
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1473.4 1013 74.4
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1472.6 1011 74.7
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1471.8 1015 74.0
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1465.7 1013 73.0
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1458.7 1012 72.9
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1457.2 1017 72.9
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1456.4 1016 73.6
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1455.7 1028 71.7
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1453.3 1017 72.6
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1450.3 1014 72.7
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1446.0 1013 72.6
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1442.9 1002 72.7
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1440.6 1020 71.1
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1437.2 1026 71.4
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1433.7 1013 72.6
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1430.2 1021 70.7
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1429.1 1021 70.6
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1428.3 1009 71.9
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1427.2 1017 71.4
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1425.2 1009 71.4
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1422.1 1018 71.6
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1420.6 1008 71.5
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1417.9 1015 71.6
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1417.9 1015 70.7
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1415.6 1014 72.2
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1414.8 1004 71.5
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1412.5 1034 70.0
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1411.7 1034 70.0
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1409.4 1016 71.4
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1404.0 1027 70.4
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1403.3 1045 69.2
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1402.5 1016 71.1
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1395.9 1020 70.9
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1395.2 1012 70.7
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1394.4 967 73.5
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1394.4 1015 70.1
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1394.0 1055 67.5
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1392.1 1003 70.8
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1388.6 1008 70.3
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1386.7 1004 69.6
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1385.5 1002 70.1
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1384.8 1042 68.1
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1382.9 1016 69.5
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1382.1 1035 68.4
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1380.9 1007 69.2
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1380.2 1004 69.3
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1372.1 1088 66.2
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1371.3 1012 68.4
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1368.2 1004 68.6
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1366.7 1005 68.9
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1364.0 1014 68.7
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1363.6 1007 68.5
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1362.1 1042 67.2
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1360.5 1010 69.3
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1351.3 967 71.8
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1350.1 1028 68.3
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1350.1 1007 67.5
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1342.8 980 69.1
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1335.9 1018 67.6
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1331.6 1010 67.2
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1330.1 975 69.6
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1329.7 1003 68.2
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1317.4 1031 65.7
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1309.7 1023 65.6
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1303.9 1019 65.3
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1302.7 933 72.0
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1299.6 1002 67.6
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1290.8 1019 65.0
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1290.4 1019 65.3
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1285.0 999 67.0
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1284.2 999 66.9
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1279.2 983 66.6
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1276.5 967 67.8
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1276.2 1115 61.2
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1270.4 1001 65.8
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1266.9 1015 65.8
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1263.1 984 67.8
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1262.7 1006 65.2
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1254.2 1009 63.0
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1250.0 1003 64.7
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1248.0 1036 62.7
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1239.9 1007 64.3
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1238.8 1045 62.5
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1223.8 1011 63.5
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1220.7 1030 62.3
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1216.4 943 66.2
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1209.5 1033 61.9
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1204.5 920 68.6
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1201.8 1141 56.1
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1200.7 997 62.1
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1187.2 1174 54.6
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1186.8 1044 60.1
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1177.2 1004 60.4
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1176.0 1002 60.2
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1172.5 1010 61.4
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1159.1 1021 60.7
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1156.7 868 68.7
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1147.1 1002 58.4
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1134.4 1021 59.8
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1104.0 892 65.4
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1100.1 986 60.8
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1089.7 863 66.6
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1082.0 934 59.5
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 6.1e-303 1044.3 812 68.2
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 1.5e-288 996.5 944 57.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.3e-273 946.8 863 58.6
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 4.9e-268 928.3 1036 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 7.3e-264 914.4 1046 48.8
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.5e-256 890.2 778 61.7
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 7.1e-251 871.3 977 48.8
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 7.4e-240 834.7 628 70.7
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 2.1e-234 816.6 626 68.2
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 6.1e-234 815.1 1010 45.7
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.9e-232 810.1 1013 45.6
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.5e-224 783.9 643 65.8
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.5e-216 757.3 620 63.9
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 1.2e-210 737.6 1222 39.8
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 8.0e-210 734.9 869 43.8
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 8.6e-180 635.2 387 78.6
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 3.3e-171 606.7 360 80.3
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 5.4e-158 562.8 389 72.0
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 4.6e-149 533.1 407 68.8
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.1e-147 528.5 565 52.0
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.8e-145 521.2 473 61.5
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 3.0e-140 503.8 534 52.1
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 3.9e-100 370.5 251 74.1
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 3.9e-100 370.5 237 76.8
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 2.0e-99 368.2 205 81.0
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.6e-99 367.9 256 70.7
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 7.2e-86 323.2 238 67.6
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 2.7e-80 304.7 837 28.9
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 2.9e-79 301.2 235 68.9
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 4.0e-76 290.8 162 82.1
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.3e-70 271.2 150 82.0
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 6.4e-58 230.3 177 65.0
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.5e-54 218.4 170 69.4
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 4.6e-48 197.6 293 45.1
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.0e-47 196.4 114 74.6
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 8.6e-47 193.4 147 72.8
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 7.3e-46 190.3 464 31.5
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 4.6e-40 171.0 90 80.0
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 4.3e-38 164.5 148 55.4
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 3.4e-35 154.8 104 76.0
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 5.8e-35 154.1 250 44.0
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 9.6e-30 136.7 72 81.9
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.6e-29 136.0 131 57.3
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 4.0e-28 131.3 77 74.0
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 3.4e-27 128.3 143 57.3
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 3.4e-27 128.3 143 57.3
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 4.9e-26 124.4 81 82.7
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.4e-25 122.1 96 65.6
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 5.6e-22 110.9 96 55.2
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 4.5e-19 101.3 71 67.6
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 2.7e-16 92.0 81 67.9
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.3e-15 89.7 58 79.3
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.1e-14 86.7 71 57.7
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 8.1e-13 80.5 67 71.6
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 3.4e-11 75.1 46 76.1
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.2e-10 72.4 50 68.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.3e-07 62.4 65 46.2


User provided reference genes

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