Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p10520 Brassica napus HOM05D010411 ORTHO05D011177 1.4e-40 169.1 80 100.0
A07p10510 Brassica napus HOM05D010411 ORTHO05D011177 1.6e-36 155.6 79 93.7
BraA07t28849Z Brassica rapa HOM05D010411 ORTHO05D011177 3.9e-35 151.0 79 91.1
BraA07t28850Z Brassica rapa HOM05D010411 ORTHO05D011177 3.3e-34 147.9 79 88.6
A05p17080 Brassica napus HOM05D010411 ORTHO05D011177 4.8e-33 144.1 78 85.9
BolC9t54369H Brassica oleracea HOM05D010411 ORTHO05D011177 4.1e-32 141.0 78 87.2
BolC9t54368H Brassica oleracea HOM05D010411 ORTHO05D011177 1.5e-31 139.0 78 85.9
BraA09t36884Z Brassica rapa HOM05D010411 ORTHO05D011177 1.9e-29 132.1 78 80.8
C09p14620 Brassica napus HOM05D001215 ORTHO05D024523 1.5e-26 122.5 70 82.9
A07p10500 Brassica napus HOM05D010411 ORTHO05D011177 1.7e-22 109.0 62 87.1
AT1G36000 Arabidopsis thaliana HOM05D010411 ORTHO05D011177 1.8e-19 99.0 76 57.9
C09p14640 Brassica napus HOM05D010411 ORTHO05D011177 3.0e-19 98.2 57 84.2
AT2G19820 Arabidopsis thaliana HOM05D000060 ORTHO05D011177 1.1e-18 96.3 78 59.0
A07p10530 Brassica napus HOM05D010411 ORTHO05D011177 1.1e-18 96.3 55 83.6
CARHR104760 Cardamine hirsuta HOM05D010411 ORTHO05D011177 1.5e-18 95.9 76 57.9
AL8G24570 Arabidopsis lyrata HOM05D010411 ORTHO05D011177 2.0e-18 95.5 76 53.9
AT2G19510 Arabidopsis thaliana HOM05D010411 ORTHO05D011177 1.3e-17 92.8 76 50.0
Carub.0003s2182 Capsella rubella HOM05D010411 ORTHO05D011177 1.7e-17 92.4 78 55.1
Carub.0003s3380 Capsella rubella HOM05D010411 ORTHO05D011177 1.1e-16 89.7 76 48.7
Thhalv10023106m.g Eutrema salsugineum HOM05D010411 ORTHO05D011177 3.1e-16 88.2 76 51.3
Thhalv10023000m.g Eutrema salsugineum HOM05D010411 ORTHO05D011177 4.1e-16 87.8 76 50.0
AL3G35900 Arabidopsis lyrata HOM05D010411 ORTHO05D011177 5.9e-15 84.0 108 43.5
BraA05t20610Z Brassica rapa HOM05D010411 ORTHO05D011177 1.6e-12 75.9 76 52.6
FAN19G2008 Fragaria x ananassa HOM05D000060 ORTHO05D011177 5.7e-10 67.4 76 40.8
FAN23G0354 Fragaria x ananassa HOM05D000060 ORTHO05D011177 9.7e-10 66.6 76 40.8
FvH4_1g07590 Fragaria vesca HOM05D000060 ORTHO05D000082 1.3e-09 66.2 76 40.8
FAN26G2589 Fragaria x ananassa HOM05D000060 ORTHO05D011177 1.3e-09 66.2 76 40.8
FAN26G3365 Fragaria x ananassa HOM05D000060 ORTHO05D000082 1.3e-09 66.2 76 40.8
FAN02G0561 Fragaria x ananassa HOM05D000060 ORTHO05D011177 3.7e-09 64.7 76 40.8
FAN28G2870 Fragaria x ananassa HOM05D000060 ORTHO05D000082 6.3e-09 63.9 76 40.8
THA.LOC104817840 Tarenaya hassleriana HOM05D000060 ORTHO05D011177 8.2e-09 63.5 79 39.2
Prupe.7G208700 Prunus persica HOM05D000060 ORTHO05D000082 3.1e-08 61.6 77 36.4
ECA234G4654 Erigeron canadensis HOM05D000060 ORTHO05D000082 1.2e-07 59.7 76 35.5
Prupe.7G145700 Prunus persica HOM05D000060 ORTHO05D000082 1.6e-07 59.3 72 37.5
PGR142G3068 Punica granatum HOM05D000060 ORTHO05D000082 2.0e-07 58.9 77 35.1
QL02p062491 Quercus lobata HOM05D000060 ORTHO05D000082 2.7e-07 58.5 77 35.1
Gohir.A10G058500 Gossypium hirsutum HOM05D000060 ORTHO05D000082 4.5e-07 57.8 73 35.6
Gohir.D10G060300 Gossypium hirsutum HOM05D000060 ORTHO05D000082 4.5e-07 57.8 73 35.6
Gorai.011G064500 Gossypium raimondii HOM05D000060 ORTHO05D000082 4.5e-07 57.8 73 35.6
Phvul.011G178700 Phaseolus vulgaris HOM05D000060 ORTHO05D011177 4.5e-07 57.8 68 39.7
CARHR065950 Cardamine hirsuta HOM05D000060 ORTHO05D000082 5.9e-07 57.4 76 36.8
Duzib235G0961 Durio zibethinus HOM05D000060 ORTHO05D000082 5.9e-07 57.4 73 35.6
Duzib160G0356 Durio zibethinus HOM05D000060 ORTHO05D000082 7.7e-07 57.0 73 34.2
RcHm_v2.0_Chr2g0093461 Rosa chinensis HOM05D000060 ORTHO05D000082 7.7e-07 57.0 76 36.8
Prupe.7G209000 Prunus persica HOM05D000060 ORTHO05D000082 1.3e-06 56.2 77 33.8
FvH4_6g33490 Fragaria vesca HOM05D000060 ORTHO05D000082 1.7e-06 55.8 73 34.2
FAN14G2199 Fragaria x ananassa HOM05D000060 ORTHO05D000082 1.7e-06 55.8 73 34.2
RcHm_v2.0_Chr2g0143351 Rosa chinensis HOM05D000060 ORTHO05D000082 1.7e-06 55.8 73 35.6
THA.LOC104814042 Tarenaya hassleriana HOM05D000060 ORTHO05D000082 1.7e-06 55.8 77 33.8
Thecc.06G112900 Theobroma cacao HOM05D000060 ORTHO05D000082 1.7e-06 55.8 73 35.6
CARHR088630 Cardamine hirsuta HOM05D000060 ORTHO05D000082 2.9e-06 55.1 73 35.6
FAN02G2282 Fragaria x ananassa HOM05D000060 ORTHO05D000082 2.9e-06 55.1 73 34.2
TAR625G0507 Trochodendron aralioides HOM05D000060 ORTHO05D414121 2.9e-06 55.1 73 35.6
EL10Ac7g16344 Beta vulgaris HOM05D000060 ORTHO05D000082 3.8e-06 54.7 73 34.2
Thecc.06G112600 Theobroma cacao HOM05D000060 ORTHO05D000082 3.8e-06 54.7 77 32.5
COL.COLO4_30671 Corchorus olitorius HOM05D000060 ORTHO05D000082 5.0e-06 54.3 73 34.2
Nn8g38847 Nelumbo nucifera HOM05D000060 ORTHO05D000082 5.0e-06 54.3 76 34.2
PGR142G1119 Punica granatum HOM05D000060 ORTHO05D011177 5.0e-06 54.3 72 37.5
AT3G13850 Arabidopsis thaliana HOM05D000060 ORTHO05D000082 6.5e-06 53.9 73 34.2
BcaB06g25430 Brassica carinata HOM05D000060 ORTHO05D000082 6.5e-06 53.9 73 37.0
Carub.0003s1339 Capsella rubella HOM05D000060 ORTHO05D000082 6.5e-06 53.9 73 34.2
AL3G26010 Arabidopsis lyrata HOM05D000060 ORTHO05D000082 8.5e-06 53.5 73 34.2
Lalb_Chr03g0029761 Lupinus albus HOM05D000060 ORTHO05D000082 8.5e-06 53.5 76 31.6


User provided reference genes

Program Settings