Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p09810 Brassica napus HOM05D000091 ORTHO05D099131 2.7e-35 151.4 72 100.0
C07p15080 Brassica napus HOM05D000091 ORTHO05D101439 6.7e-34 146.7 73 98.6
Thhalv10020370m.g Eutrema salsugineum HOM05D000091 ORTHO05D003024 1.5e-09 65.9 49 57.1
Potri.016G139900 Populus trichocarpa HOM05D000091 ORTHO05D003024 2.5e-09 65.1 53 52.8
TWI74G1296 Tripterygium wilfordii HOM05D000091 ORTHO05D003024 3.3e-09 64.7 49 57.1
BcaB07g32668 Brassica carinata HOM05D000091 ORTHO05D003024 4.3e-09 64.3 49 61.2
Cfa017005 Carpinus fangiana HOM05D000091 ORTHO05D003024 9.7e-09 63.2 49 55.1
Ca_07786_v3 Cicer arietinum L. HOM05D000091 ORTHO05D003024 9.7e-09 63.2 49 53.1
Phvul.008G080100 Phaseolus vulgaris HOM05D000091 ORTHO05D003024 1.3e-08 62.8 49 53.1
Rhsim05G0232800 Rhododendron simsii HOM05D000091 ORTHO05D003024 1.3e-08 62.8 50 54.0
Sp3g07100 Schrenkiella parvula HOM05D000091 ORTHO05D003024 1.7e-08 62.4 49 55.1
VMungo1383G2436 Vigna mungo HOM05D000091 ORTHO05D003024 1.7e-08 62.4 49 53.1
AL3G19530 Arabidopsis lyrata HOM05D000091 ORTHO05D003024 2.2e-08 62.0 49 57.1
AT3G08570 Arabidopsis thaliana HOM05D000091 ORTHO05D003024 2.2e-08 62.0 49 57.1
BcaC05g27079 Brassica carinata HOM05D000091 ORTHO05D003024 2.2e-08 62.0 49 59.2
A09p35870 Brassica napus HOM05D000091 ORTHO05D003024 2.2e-08 62.0 49 59.2
C05p29600 Brassica napus HOM05D000091 ORTHO05D003024 2.2e-08 62.0 49 59.2
BolC5t31691H Brassica oleracea HOM05D000091 ORTHO05D003024 2.2e-08 62.0 49 59.2
BraA09t39113Z Brassica rapa HOM05D000091 ORTHO05D003024 2.2e-08 62.0 49 59.2
Carub.0003s0770 Capsella rubella HOM05D000091 ORTHO05D003024 2.2e-08 62.0 49 57.1
CARHR082870 Cardamine hirsuta HOM05D000091 ORTHO05D003024 2.2e-08 62.0 50 56.0
Migut.J00016 Erythranthe guttata HOM05D000091 ORTHO05D003024 2.2e-08 62.0 49 51.0
Glyma.18G216600 Glycine max HOM05D000091 ORTHO05D003024 2.2e-08 62.0 49 53.1
Thecc.04G148500 Theobroma cacao HOM05D000091 ORTHO05D003024 2.2e-08 62.0 49 55.1
ATR1127G091 Amborella trichopoda HOM05D000091 ORTHO05D003024 2.8e-08 61.6 49 51.0
Haze_21201 Corylus avellana HOM05D000091 ORTHO05D003024 2.8e-08 61.6 49 53.1
Lj2C56T10 Lonicera japonica HOM05D000091 ORTHO05D003024 2.8e-08 61.6 49 53.1
THA.LOC104816157 Tarenaya hassleriana HOM05D000091 ORTHO05D003024 2.8e-08 61.6 49 51.0
Glyma.09G272500 Glycine max HOM05D000091 ORTHO05D003024 3.7e-08 61.2 49 53.1
Manes.08G169100 Manihot esculenta HOM05D000091 ORTHO05D003024 3.7e-08 61.2 49 55.1
CiPaw.09G222900 Carya illinoinensis HOM05D000091 ORTHO05D003024 4.8e-08 60.8 49 55.1
Medtr7g073980 Medicago truncatula HOM05D000091 ORTHO05D003024 4.8e-08 60.8 49 55.1
Psat3g117480 Pisum sativum HOM05D000091 ORTHO05D003024 4.8e-08 60.8 49 53.1
Zm00001eb405800 Zea mays HOM05D000091 ORTHO05D003024 4.8e-08 60.8 49 51.0
AL3G19660 Arabidopsis lyrata HOM05D000091 ORTHO05D003024 6.3e-08 60.5 49 53.1
Dinv25364 Davidia involucrata HOM05D000091 ORTHO05D003024 6.3e-08 60.5 49 51.0
Duzib151G1028 Durio zibethinus HOM05D000091 ORTHO05D003024 6.3e-08 60.5 49 55.1
SalBow5G1530 Salvia bowleyana HOM05D000091 ORTHO05D003024 6.3e-08 60.5 49 53.1
SalBow5G4782 Salvia bowleyana HOM05D000091 ORTHO05D003024 6.3e-08 60.5 49 53.1
TPR.G35101 Trifolium pratense HOM05D000091 ORTHO05D003024 6.3e-08 60.5 49 53.1
FvH4_6g09490 Fragaria vesca HOM05D000091 ORTHO05D003024 8.2e-08 60.1 49 49.0
Lj1g0010611 Lotus japonicus HOM05D000091 ORTHO05D003024 8.2e-08 60.1 49 55.1
QL07p031272 Quercus lobata HOM05D000091 ORTHO05D003024 8.2e-08 60.1 49 53.1
QL07p031630 Quercus lobata HOM05D000091 ORTHO05D003024 8.2e-08 60.1 49 53.1
Aa31LG5G11400 Aethionema arabicum HOM05D000091 ORTHO05D003024 1.1e-07 59.7 45 57.8
AUR62006444 Chenopodium quinoa HOM05D000091 ORTHO05D003024 1.1e-07 59.7 49 53.1
AUR62029797 Chenopodium quinoa HOM05D000091 ORTHO05D003024 1.1e-07 59.7 49 53.1
MD04G1177100 Malus domestica HOM05D000091 ORTHO05D003024 1.1e-07 59.7 49 51.0
RcHm_v2.0_Chr3g0460071 Rosa chinensis HOM05D000091 ORTHO05D003024 1.1e-07 59.7 49 46.9
Sed0006696 Sechium edule HOM05D000091 ORTHO05D003024 1.1e-07 59.7 66 42.4
vmacro20390 Vaccinium macrocarpon HOM05D000091 ORTHO05D003024 1.1e-07 59.7 49 53.1
Nitab4.5_0001876g0030 Nicotiana tabacum HOM05D000091 ORTHO05D003024 1.4e-07 59.3 49 53.1
Sabra04G0156500 Salix brachista HOM05D000091 ORTHO05D003024 1.4e-07 59.3 49 51.0
BraA03t12810Z Brassica rapa HOM05D000091 ORTHO05D003024 1.8e-07 58.9 66 43.9
Ciclev10011315m.g Citrus clementina HOM05D000091 ORTHO05D003024 1.8e-07 58.9 49 51.0
Gohir.A02G002000 Gossypium hirsutum HOM05D000091 ORTHO05D003024 1.8e-07 58.9 49 53.1
Gorai.005G002800 Gossypium raimondii HOM05D000091 ORTHO05D003024 1.8e-07 58.9 49 53.1
Os12g0117600 Oryza sativa ssp. japonica HOM05D000091 ORTHO05D003024 1.8e-07 58.9 49 46.9
CARHR082960 Cardamine hirsuta HOM05D000091 ORTHO05D003024 2.4e-07 58.5 49 53.1
arahy.Tifrunner.gnm1.ann1.2IS61F Arachis hypogaea HOM05D000091 ORTHO05D003024 3.1e-07 58.2 50 44.0
arahy.Tifrunner.gnm1.ann1.UYIL0G Arachis hypogaea HOM05D000091 ORTHO05D003024 3.1e-07 58.2 50 44.0
Cpa.g.sc72.25 Carica papaya HOM05D000091 ORTHO05D003024 3.1e-07 58.2 49 49.0
Gohir.D02G002300 Gossypium hirsutum HOM05D000091 ORTHO05D003024 3.1e-07 58.2 49 53.1
Lj1g0019993 Lotus japonicus HOM05D000091 ORTHO05D003024 3.1e-07 58.2 49 51.0
Manes.09G122200 Manihot esculenta HOM05D000091 ORTHO05D003024 3.1e-07 58.2 49 53.1
Nitab4.5_0000048g0280 Nicotiana tabacum HOM05D000091 ORTHO05D003024 3.1e-07 58.2 49 51.0
GSVIVG01029878001 Vitis vinifera HOM05D000091 ORTHO05D003024 3.1e-07 58.2 49 46.9
AT3G08660 Arabidopsis thaliana HOM05D000091 ORTHO05D003024 4.1e-07 57.8 66 42.4
MSTRG.5480 Avicennia marina HOM05D000091 ORTHO05D003024 4.1e-07 57.8 49 51.0
BcaB04g18576 Brassica carinata HOM05D000091 ORTHO05D003024 4.1e-07 57.8 44 59.1
A03p36420 Brassica napus HOM05D000091 ORTHO05D003024 4.1e-07 57.8 66 43.9
C03p44030 Brassica napus HOM05D000091 ORTHO05D003024 4.1e-07 57.8 66 43.9
MBI15_g36680_MAGBIO Magnolia biondii HOM05D000091 ORTHO05D003024 4.1e-07 57.8 49 46.9
Os11g0118500 Oryza sativa ssp. japonica HOM05D000091 ORTHO05D003024 4.1e-07 57.8 49 46.9
Prupe.6G296800 Prunus persica HOM05D000091 ORTHO05D003024 4.1e-07 57.8 49 49.0
Solyc09g048980.4 Solanum lycopersicum HOM05D000091 ORTHO05D003024 4.1e-07 57.8 49 49.0
Sopen09g016530 Solanum pennellii HOM05D000091 ORTHO05D003024 4.1e-07 57.8 49 49.0
EL10Ac7g17134 Beta vulgaris HOM05D000091 ORTHO05D003024 5.3e-07 57.4 49 49.0
MD12G1192300 Malus domestica HOM05D000091 ORTHO05D003024 5.3e-07 57.4 49 49.0
Nn2g10237 Nelumbo nucifera HOM05D000091 ORTHO05D003024 5.3e-07 57.4 49 46.9
PGSC0003DMG400004044 Solanum tuberosum HOM05D000091 ORTHO05D003024 5.3e-07 57.4 49 49.0
BcaC01g04189 Brassica carinata HOM05D000091 ORTHO05D003024 6.9e-07 57.0 66 43.9
BolC3t16674H Brassica oleracea HOM05D000091 ORTHO05D003024 6.9e-07 57.0 66 43.9
Lsat_1_v5_gn_8_109560 Lactuca sativa HOM05D000091 ORTHO05D003024 6.9e-07 57.0 49 49.0
Lalb_Chr19g0123931 Lupinus albus HOM05D000091 ORTHO05D003024 9.1e-07 56.6 49 49.0
Oeu013179.1 Olea europaea HOM05D000091 ORTHO05D003024 9.1e-07 56.6 49 49.0
Sp1g26430 Schrenkiella parvula HOM05D000091 ORTHO05D003024 9.1e-07 56.6 64 46.9
Hund19742 Selenicereus undatus HOM05D000091 ORTHO05D003024 9.1e-07 56.6 49 46.9
CSS0015449 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D003024 1.2e-06 56.2 49 46.9
CSS0016624 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D003024 1.2e-06 56.2 49 46.9
Carub.0003s0779 Capsella rubella HOM05D000091 ORTHO05D003024 1.2e-06 56.2 49 46.9
ECA236G4059 Erigeron canadensis HOM05D000091 ORTHO05D003024 1.5e-06 55.8 49 46.9
BcaB07g32694 Brassica carinata HOM05D000091 ORTHO05D003024 2.0e-06 55.5 36 75.0
PGR031G0626 Punica granatum HOM05D000091 ORTHO05D003024 2.0e-06 55.5 63 44.4
TAR636G3346 Trochodendron aralioides HOM05D000091 ORTHO05D003024 2.6e-06 55.1 64 43.8
Sc20g0007190 Simmondsia chinensis HOM05D000091 ORTHO05D003024 3.4e-06 54.7 49 46.9
FAN02G2358 Fragaria x ananassa HOM05D000091 ORTHO05D003024 4.5e-06 54.3 57 43.9
FAN05G4327 Fragaria x ananassa HOM05D000091 ORTHO05D003024 4.5e-06 54.3 57 43.9
FAN14G4854 Fragaria x ananassa HOM05D000091 ORTHO05D003024 4.5e-06 54.3 57 43.9
HanXRQChr06g0181131 Helianthus annuus HOM05D000091 ORTHO05D003024 4.5e-06 54.3 64 42.2
FAN09G3912 Fragaria x ananassa HOM05D000091 ORTHO05D003024 7.7e-06 53.5 57 42.1
PSO339G6303 Papaver somniferum HOM05D000091 ORTHO05D003024 7.7e-06 53.5 49 49.0
PSO384G3447 Papaver somniferum HOM05D000091 ORTHO05D003024 7.7e-06 53.5 49 49.0


User provided reference genes

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