Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 5.3e-90 334.3 169 100.0
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 2.1e-54 216.1 108 99.1
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 5.9e-49 198.0 108 93.5
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.0e-48 197.2 108 92.6
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 5.0e-48 194.9 108 92.6
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 7.5e-44 181.0 177 61.6
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 8.9e-37 157.5 108 75.9
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 5.7e-36 154.8 109 80.7
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-34 150.6 102 76.5
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.7e-33 146.0 112 77.7
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 6.6e-32 141.4 107 77.6
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.3e-31 138.7 112 75.9
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 4.4e-28 128.6 117 70.1
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 8.6e-24 114.4 111 60.4
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.8e-22 109.4 99 62.6
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.0e-20 103.2 118 50.8
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.0e-20 103.2 98 58.2
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.2e-19 99.8 128 48.4
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.4e-18 97.1 112 55.4
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.4e-18 95.1 99 57.6
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.6e-17 92.0 109 51.4
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.0e-16 89.4 112 48.2
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.9e-15 86.7 109 48.6
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 2.5e-15 86.3 101 53.5
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 3.3e-15 85.9 112 48.2
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 3.3e-15 85.9 112 47.3
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 4.3e-15 85.5 100 52.0
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 5.6e-15 85.1 111 48.6
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 7.3e-15 84.7 109 48.6
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 7.3e-15 84.7 109 48.6
C03p53040 Brassica napus HOM05D037847 ORTHO05D032416 2.8e-14 82.8 81 58.0
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.8e-14 82.8 98 53.1
BcaC01g03387 Brassica carinata HOM05D037847 ORTHO05D032416 4.7e-14 82.0 57 71.9
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 8.1e-14 81.3 101 54.5
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 8.1e-14 81.3 97 51.5
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-13 80.9 113 48.7
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.1e-13 80.9 113 48.7
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.8e-13 80.1 120 49.2
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.8e-13 80.1 112 47.3
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.3e-13 79.7 96 53.1
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 2.3e-13 79.7 115 47.0
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.1e-13 79.3 121 46.3
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.0e-13 79.0 114 47.4
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.0e-13 79.0 121 46.3
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 4.0e-13 79.0 95 49.5
BolC3t17568H Brassica oleracea HOM05D037847 ORTHO05D032416 5.2e-13 78.6 81 56.8
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 5.2e-13 78.6 103 50.5
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 5.2e-13 78.6 102 51.0
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 6.8e-13 78.2 111 47.7
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 8.9e-13 77.8 113 47.8
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 8.9e-13 77.8 116 48.3
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.9e-13 77.8 121 46.3
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 8.9e-13 77.8 96 51.0
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.2e-12 77.4 110 48.2
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.5e-12 77.0 96 52.1
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.5e-12 77.0 109 45.0
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 4.4e-12 75.5 95 50.5
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 5.8e-12 75.1 115 47.8
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 7.5e-12 74.7 112 44.6
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 7.5e-12 74.7 99 45.5
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 7.5e-12 74.7 101 49.5
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 9.9e-12 74.3 95 49.5
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 9.9e-12 74.3 107 46.7
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 9.9e-12 74.3 110 51.8
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.3e-11 73.9 103 48.5
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.7e-11 73.6 93 47.3
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.7e-11 73.6 91 48.4
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 1.7e-11 73.6 97 48.5
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.7e-11 73.6 104 48.1
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 2.2e-11 73.2 106 46.2
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 2.2e-11 73.2 98 49.0
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.9e-11 72.8 94 51.1
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.9e-11 72.8 101 44.6
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.9e-11 72.8 113 46.9
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.9e-11 72.8 108 46.3
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 3.7e-11 72.4 101 44.6
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.7e-11 72.4 94 51.1
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 4.9e-11 72.0 97 44.3
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 6.4e-11 71.6 94 50.0
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 6.4e-11 71.6 93 46.2
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 6.4e-11 71.6 114 43.9
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 8.3e-11 71.2 107 45.8
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-10 70.9 94 48.9
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.1e-10 70.9 94 48.9
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.1e-10 70.9 106 44.3
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.1e-10 70.9 93 48.4
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.1e-10 70.9 93 48.4
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.1e-10 70.9 112 47.3
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.1e-10 70.9 102 48.0
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.4e-10 70.5 111 42.3
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-10 70.5 94 48.9
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.4e-10 70.5 107 44.9
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.9e-10 70.1 84 52.4
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.9e-10 70.1 107 45.8
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.9e-10 70.1 109 43.1
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.9e-10 70.1 100 46.0
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 2.4e-10 69.7 94 47.9
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.4e-10 69.7 93 45.2
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.2e-10 69.3 93 51.6
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 3.2e-10 69.3 101 44.6
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.2e-10 69.3 124 41.9
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.2e-10 69.3 124 41.9
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 4.1e-10 68.9 94 52.1
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 4.1e-10 68.9 108 46.3
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.4e-10 68.6 113 46.9
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 5.4e-10 68.6 91 49.5
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 5.4e-10 68.6 110 42.7
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 7.1e-10 68.2 94 47.9
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 9.2e-10 67.8 87 50.6
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 9.2e-10 67.8 94 52.1
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 9.2e-10 67.8 109 43.1
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 9.2e-10 67.8 93 48.4
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.6e-09 67.0 103 44.7
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.6e-09 67.0 103 44.7
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.6e-09 67.0 110 43.6
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 2.1e-09 66.6 90 46.7
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 2.1e-09 66.6 96 47.9
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.1e-09 66.6 112 43.8
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.1e-09 66.6 103 44.7
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.7e-09 66.2 94 47.9
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 2.7e-09 66.2 98 44.9
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 2.7e-09 66.2 92 44.6
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.7e-09 66.2 93 45.2
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 3.5e-09 65.9 97 48.5
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 3.5e-09 65.9 86 46.5
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 3.5e-09 65.9 94 48.9
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 4.6e-09 65.5 101 42.6
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 6.0e-09 65.1 100 45.0
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 6.0e-09 65.1 96 46.9
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.8e-09 64.7 113 44.2
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.8e-09 64.7 113 44.2
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 7.8e-09 64.7 96 42.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.0e-08 64.3 84 47.6
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-08 63.9 85 47.1
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-08 63.9 85 47.1
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.7e-08 63.5 111 43.2
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.3e-08 63.2 85 47.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 3.0e-08 62.8 88 50.0
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 3.9e-08 62.4 99 46.5
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 3.9e-08 62.4 104 44.2
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 5.1e-08 62.0 96 43.8
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 6.6e-08 61.6 116 41.4
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 6.6e-08 61.6 91 46.2
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 6.6e-08 61.6 95 40.0
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 8.6e-08 61.2 89 44.9
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 1.9e-07 60.1 93 47.3
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 3.3e-07 59.3 105 37.1
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 3.3e-07 59.3 98 39.8
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 3.3e-07 59.3 142 36.6
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.3e-07 58.2 93 46.2
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.3e-07 58.2 93 46.2
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 1.6e-06 57.0 93 37.6
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.6e-06 57.0 95 38.9
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 2.1e-06 56.6 89 41.6
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.1e-06 56.6 104 39.4
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 2.1e-06 56.6 91 45.1
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.8e-06 56.2 109 40.4
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.8e-06 56.2 86 47.7
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.8e-06 56.2 94 43.6
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.6e-06 55.8 83 47.0
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.7e-06 55.5 116 35.3
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 8.1e-06 54.7 99 43.4
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 8.1e-06 54.7 92 44.6


User provided reference genes

Program Settings