Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p09070 Brassica napus HOM05D008307 ORTHO05D010374 0.0e+00 1252.7 650 100.0
BraA07t28701Z Brassica rapa HOM05D008307 ORTHO05D010374 0.0e+00 1232.6 650 98.8
C07p14040 Brassica napus HOM05D008307 ORTHO05D010374 5.6e-305 1050.4 651 87.9
BolC7t41901H Brassica oleracea HOM05D008307 ORTHO05D010374 7.5e-302 1040.0 651 87.4
BcaC06g35512 Brassica carinata HOM05D008307 ORTHO05D010374 1.5e-286 989.2 657 83.4
Thhalv10020149m.g Eutrema salsugineum HOM05D008307 ORTHO05D010374 5.0e-205 718.4 746 58.7
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 1.6e-179 633.6 796 50.9
AT3G23370 Arabidopsis thaliana HOM05D008307 ORTHO05D010374 1.0e-165 587.8 824 47.3
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 1.1e-111 408.3 318 63.2
THA.LOC104822237 Tarenaya hassleriana HOM05D008307 ORTHO05D010374 9.4e-95 352.1 734 37.9
Carub.0003s2363 Capsella rubella HOM05D008307 ORTHO05D010374 5.9e-89 332.8 239 67.4
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 4.1e-74 283.5 317 46.4
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 1.2e-70 271.9 318 44.7
TWI73G0959 Tripterygium wilfordii HOM05D008307 ORTHO05D010374 3.1e-69 267.3 307 46.3
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 1.1e-66 258.8 285 45.3
RcHm_v2.0_Chr4g0393941 Rosa chinensis HOM05D008307 ORTHO05D010374 1.9e-66 258.1 423 34.5
TAR365G0480 Trochodendron aralioides HOM05D008307 ORTHO05D010374 4.1e-66 256.9 303 45.9
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 2.8e-62 244.2 505 32.9
FvH4_4g03920 Fragaria vesca HOM05D008307 ORTHO05D010374 5.2e-61 240.0 353 36.8
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 8.9e-61 239.2 329 40.1
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 2.0e-60 238.0 370 39.5
FAN22G1022 Fragaria x ananassa HOM05D000478 ORTHO05D010374 8.3e-59 232.6 363 35.5
Rhsim04G0177000 Rhododendron simsii HOM05D008307 ORTHO05D010374 8.6e-56 222.6 594 32.8
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 2.8e-54 217.6 234 47.9
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 3.6e-54 217.2 293 39.6
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 2.3e-53 214.5 565 30.1
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 2.3e-53 214.5 293 40.3
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 1.5e-52 211.8 298 40.9
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 4.4e-52 210.3 293 38.9
FAN17G2370 Fragaria x ananassa HOM05D000478 ORTHO05D010374 2.9e-51 207.6 260 41.5
DCAR_027325 Daucus carota HOM05D008307 ORTHO05D010374 6.4e-51 206.5 330 37.6
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 1.4e-50 205.3 313 37.7
vmacro08510 Vaccinium macrocarpon HOM05D008307 ORTHO05D010374 4.1e-50 203.8 308 39.6
CSS0044876 Camellia sinensis var. sinensis HOM05D008307 ORTHO05D010374 2.1e-49 201.4 201 54.2
Migut.N00284 Erythranthe guttata HOM05D008307 ORTHO05D010374 7.8e-49 199.5 304 37.2
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 6.6e-48 196.4 284 38.4
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 3.3e-47 194.1 293 38.2
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 4.3e-47 193.7 413 31.2
Peaxi162Scf00041g00209 Petunia axillaris HOM05D008307 ORTHO05D010374 1.1e-45 189.1 374 34.8
PGR031G2080 Punica granatum HOM05D008307 ORTHO05D010374 5.8e-44 183.3 215 40.9
DCAR_024261 Daucus carota HOM05D008307 ORTHO05D010374 1.3e-43 182.2 548 28.8
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 6.4e-43 179.9 302 36.4
FAN12G4262 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.0e-40 172.6 193 45.6
SGA_v2.0_scaffold31G12662 Striga asiatica HOM05D008307 ORTHO05D010374 1.3e-40 172.2 362 33.1
Prupe.1G041400 Prunus persica HOM05D008307 ORTHO05D010374 4.2e-34 150.6 199 39.2
Carub.0003s2362 Capsella rubella HOM05D008307 ORTHO05D010374 2.7e-33 147.9 342 38.9
Thecc.04G258000 Theobroma cacao HOM05D008307 ORTHO05D010374 9.6e-31 139.4 177 42.9
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 4.0e-29 134.0 288 30.9
Gohir.D10G155880 Gossypium hirsutum HOM05D008307 ORTHO05D010374 1.7e-27 128.6 284 31.7
Gorai.011G175900 Gossypium raimondii HOM05D008307 ORTHO05D010374 1.6e-25 122.1 483 26.1
Cc03_g05710 Coffea canephora HOM05D008307 ORTHO05D010374 6.0e-25 120.2 139 41.0
Cc03_g05700 Coffea canephora HOM05D008307 ORTHO05D010374 1.7e-19 102.1 158 38.6
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 3.3e-15 87.8 316 23.7
SMO329G0060 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 3.3e-15 87.8 154 33.1
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 5.7e-15 87.0 147 33.3
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 1.4e-13 82.4 151 33.8
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 9.0e-13 79.7 313 25.2
Mapoly0004s0145 Marchantia polymorpha HOM05D008307 ORTHO05D010374 5.5e-10 70.5 295 24.1
Pp3c5_17310 Physcomitrium patens HOM05D008307 ORTHO05D010374 7.4e-07 60.1 112 30.4
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 4.8e-06 57.4 146 25.3


User provided reference genes

Program Settings