Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p08650 Brassica napus HOM05D007138 ORTHO05D009148 0.0e+00 1151.3 603 100.0
BraA07t28655Z Brassica rapa HOM05D007138 ORTHO05D009148 0.0e+00 1148.7 603 99.8
BcaC06g35563 Brassica carinata HOM05D007138 ORTHO05D009148 5.0e-308 1060.4 635 88.3
C07p13480 Brassica napus HOM05D007138 ORTHO05D009148 1.8e-305 1052.0 635 87.9
BolC7t41843H Brassica oleracea HOM05D007138 ORTHO05D009148 1.8e-305 1052.0 635 87.9
Sp3g21450 Schrenkiella parvula HOM05D007138 ORTHO05D009148 7.4e-219 764.2 633 69.8
BcaB06g26533 Brassica carinata HOM05D007138 ORTHO05D009148 3.9e-204 715.3 613 68.2
Thhalv10002448m.g Eutrema salsugineum HOM05D007138 ORTHO05D009148 2.7e-181 639.4 637 62.2
AL3G38640 Arabidopsis lyrata HOM05D007138 ORTHO05D009148 1.2e-179 634.0 621 61.5
CARHR099730 Cardamine hirsuta HOM05D007138 ORTHO05D009148 2.1e-173 613.2 622 59.6
Carub.0003s2404 Capsella rubella HOM05D007138 ORTHO05D009148 3.5e-168 595.9 619 59.3
AT3G23740 Arabidopsis thaliana HOM05D007138 ORTHO05D009148 1.4e-148 530.8 612 55.1
Aa31LG8G10280 Aethionema arabicum HOM05D007138 ORTHO05D009148 1.7e-130 470.7 690 48.7
THA.LOC104804782 Tarenaya hassleriana HOM05D007138 ORTHO05D009148 3.1e-100 370.2 627 45.0
Atru.chr3.1784 Acer truncatum HOM05D007138 ORTHO05D009148 1.3e-42 178.7 385 36.4
AT4G14120 Arabidopsis thaliana HOM05D007138 ORTHO05D026809 1.8e-39 168.3 374 39.8
Gohir.A02G017700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 1.3e-37 162.2 750 28.5
Gohir.D02G019900 Gossypium hirsutum HOM05D007138 ORTHO05D009148 1.7e-37 161.8 752 28.1
QL06p027005 Quercus lobata HOM05D007138 ORTHO05D009148 2.9e-37 161.0 369 34.1
Migut.G00946 Erythranthe guttata HOM05D007138 ORTHO05D009148 4.9e-37 160.2 565 28.3
Cpa.g.sc157.22 Carica papaya HOM05D007138 ORTHO05D009148 8.3e-37 159.5 508 32.7
FAN12G4162 Fragaria x ananassa HOM05D007138 ORTHO05D009148 8.3e-37 159.5 432 33.3
Gorai.005G025100 Gossypium raimondii HOM05D007138 ORTHO05D009148 1.4e-36 158.7 759 27.8
TAR365G0398 Trochodendron aralioides HOM05D007138 ORTHO05D009148 1.4e-36 158.7 654 28.9
FvH4_4g12980 Fragaria vesca HOM05D007138 ORTHO05D009148 1.2e-35 155.6 432 32.9
Haze_11677 Corylus avellana HOM05D007138 ORTHO05D009148 3.5e-35 154.1 420 31.9
FAN07G0102 Fragaria x ananassa HOM05D007138 ORTHO05D009148 3.5e-35 154.1 432 32.4
MD04G1019900 Malus domestica HOM05D007138 ORTHO05D009148 4.6e-35 153.7 443 30.9
Potri.002G236300 Populus trichocarpa HOM05D007138 ORTHO05D009148 1.0e-34 152.5 395 34.2
GSVIVG01031579001 Vitis vinifera HOM05D007138 ORTHO05D009148 1.0e-34 152.5 417 33.1
Sabra02G0180000 Salix brachista HOM05D007138 ORTHO05D009148 1.7e-34 151.8 391 34.5
ECA233G0560 Erigeron canadensis HOM05D007138 ORTHO05D009148 3.0e-34 151.0 674 28.9
Thecc.04G192200 Theobroma cacao HOM05D007138 ORTHO05D009148 6.6e-34 149.8 416 32.2
Cfa008656 Carpinus fangiana HOM05D007138 ORTHO05D009148 1.1e-33 149.1 342 36.0
AL7G42290 Arabidopsis lyrata HOM05D007138 ORTHO05D026809 2.5e-33 147.9 317 38.8
Dinv27178 Davidia involucrata HOM05D007138 ORTHO05D009148 3.3e-33 147.5 367 34.1
Lsat_1_v5_gn_6_59601 Lactuca sativa HOM05D007138 ORTHO05D009148 3.3e-33 147.5 516 29.7
Duzib151G0530 Durio zibethinus HOM05D007138 ORTHO05D009148 5.6e-33 146.7 402 34.8
Prupe.1G169400 Prunus persica HOM05D007138 ORTHO05D009148 7.3e-33 146.4 456 32.5
TPR.G11960 Trifolium pratense HOM05D000150 ORTHO05D000108 7.3e-33 146.4 332 35.8
RcHm_v2.0_Chr4g0412661 Rosa chinensis HOM05D007138 ORTHO05D009148 9.5e-33 146.0 377 32.6
CARHR220140 Cardamine hirsuta HOM05D007138 ORTHO05D026809 1.2e-32 145.6 330 38.8
Ciclev10004866m.g Citrus clementina HOM05D007138 ORTHO05D009148 1.2e-32 145.6 400 35.2
SalBow2G0985 Salvia bowleyana HOM05D007138 ORTHO05D009148 1.2e-32 145.6 712 27.1
Gohir.A09G207700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 1.6e-32 145.2 429 33.3
Gohir.D09G201200 Gossypium hirsutum HOM05D007138 ORTHO05D009148 1.6e-32 145.2 429 33.3
AUR62020894 Chenopodium quinoa HOM05D007138 ORTHO05D009148 2.8e-32 144.4 424 32.8
Manes.01G054400 Manihot esculenta HOM05D007138 ORTHO05D009148 2.8e-32 144.4 648 28.9
Gorai.006G224900 Gossypium raimondii HOM05D007138 ORTHO05D009148 3.6e-32 144.1 426 33.3
CiPaw.01G114100 Carya illinoinensis HOM05D007138 ORTHO05D009148 1.8e-31 141.7 353 32.9
CANSAT78G1621 Cannabis sativa HOM05D007138 ORTHO05D009148 2.3e-31 141.4 371 30.2
SalBow2G2858 Salvia bowleyana HOM05D007138 ORTHO05D009148 2.3e-31 141.4 695 26.6
arahy.Tifrunner.gnm1.ann1.JT7ZMS Arachis hypogaea HOM05D007138 ORTHO05D009148 8.9e-31 139.4 345 33.6
Eucgr.H02635 Eucalyptus grandis HOM05D007138 ORTHO05D009148 4.4e-30 137.1 370 31.9
Lalb_Chr13g0294671 Lupinus albus HOM05D007138 ORTHO05D009148 4.4e-30 137.1 359 30.4
arahy.Tifrunner.gnm1.ann1.KQUG48 Arachis hypogaea HOM05D007138 ORTHO05D009148 7.5e-30 136.3 346 33.8
Lalb_Chr12g0205841 Lupinus albus HOM05D007138 ORTHO05D009148 7.5e-30 136.3 356 32.9
TWI53G1035 Tripterygium wilfordii HOM05D007138 ORTHO05D009148 9.8e-30 136.0 358 31.6
Ca_18004_v3 Cicer arietinum L. HOM05D007138 ORTHO05D009148 1.7e-29 135.2 332 32.8
Nitab4.5_0000037g0170 Nicotiana tabacum HOM05D007138 ORTHO05D009148 4.9e-29 133.7 638 26.8
Hma1.2p1_1457F.1_g284650 Hydrangea macrophylla HOM05D007138 ORTHO05D009148 6.4e-29 133.3 360 31.9
Hund25334 Selenicereus undatus HOM05D007138 ORTHO05D009148 6.4e-29 133.3 464 28.9
MSTRG.9782 Avicennia marina HOM05D007138 ORTHO05D009148 8.3e-29 132.9 403 32.3
AUR62018524 Chenopodium quinoa HOM05D007138 ORTHO05D009148 2.4e-28 131.3 458 31.4
Lj4g0024791 Lotus japonicus HOM05D007138 ORTHO05D009148 3.2e-28 131.0 352 32.4
EL10Ac3g07428 Beta vulgaris HOM05D007138 ORTHO05D009148 4.1e-28 130.6 444 30.4
Sc13g0000510 Simmondsia chinensis HOM05D007138 ORTHO05D009148 7.1e-28 129.8 494 30.4
CsaV3_6G009270 Cucumis sativus L. HOM05D007138 ORTHO05D009148 2.7e-27 127.9 377 33.7
Nn1g08135 Nelumbo nucifera HOM05D007138 ORTHO05D009148 4.6e-27 127.1 383 32.4
Medtr8g083310 Medicago truncatula HOM05D007138 ORTHO05D009148 6.0e-27 126.7 337 31.8
Aqoxy2G03906 Aquilegia oxysepala HOM05D007138 ORTHO05D009148 7.8e-27 126.3 728 26.2
ClCG06G003170 Citrullus lanatus HOM05D007138 ORTHO05D009148 7.8e-27 126.3 380 32.4
Oeu034315.1 Olea europaea HOM05D007138 ORTHO05D009148 7.8e-27 126.3 364 31.3
Solyc09g092510.3 Solanum lycopersicum HOM05D007138 ORTHO05D009148 7.8e-27 126.3 573 28.1
Sopen09g035410 Solanum pennellii HOM05D007138 ORTHO05D009148 1.3e-26 125.6 564 27.1
Glyma.08G107400 Glycine max HOM05D007138 ORTHO05D009148 3.9e-26 124.0 360 31.4
Cc03_g09210 Coffea canephora HOM05D007138 ORTHO05D009148 5.1e-26 123.6 459 28.5
PGR083G1257 Punica granatum HOM05D007138 ORTHO05D009148 5.1e-26 123.6 349 32.4
PGSC0003DMG400021869 Solanum tuberosum HOM05D007138 ORTHO05D009148 5.1e-26 123.6 559 28.3
Psat0s4823g0040 Pisum sativum HOM05D007138 ORTHO05D009148 1.5e-25 122.1 372 31.5
Sed0014888 Sechium edule HOM05D007138 ORTHO05D009148 4.3e-25 120.6 341 33.4
MELO3C021153.2 Cucumis melo HOM05D007138 ORTHO05D009148 5.6e-25 120.2 140 51.4
HanXRQChr02g0058451 Helianthus annuus HOM05D007138 ORTHO05D009148 7.3e-25 119.8 711 25.2
Phvul.003G291400 Phaseolus vulgaris HOM05D007138 ORTHO05D009148 1.4e-23 115.5 326 33.4
unitig_747.g21666 Utricularia gibba HOM05D007138 ORTHO05D009148 3.1e-23 114.4 342 31.3
Glyma.05G150500 Glycine max HOM05D007138 ORTHO05D009148 6.8e-23 113.2 344 29.7
VMungo0251G1281 Vigna mungo HOM05D007138 ORTHO05D009148 6.8e-23 113.2 132 50.0
MBI11_g07400_MAGBIO Magnolia biondii HOM05D007138 ORTHO05D009148 1.2e-22 112.5 135 44.4
Lsat_1_v5_gn_6_58941 Lactuca sativa HOM05D007138 ORTHO05D009148 2.0e-22 111.7 442 29.0
Peaxi162Scf00286g01047 Petunia axillaris HOM05D007138 ORTHO05D009148 9.9e-22 109.4 524 26.7
Ah.04g149560 Amaranthus hybridus HOM05D001269 ORTHO05D001083 3.7e-21 107.5 351 30.8
Zm00001eb334100 Zea mays HOM05D007138 ORTHO05D009148 4.9e-21 107.1 134 41.8
Carub.0007s2830 Capsella rubella HOM05D007138 ORTHO05D026809 8.4e-21 106.3 264 34.5
Zm00001eb127090 Zea mays HOM05D007138 ORTHO05D009148 2.4e-20 104.8 569 25.1
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 8.6e-18 96.3 138 41.3
Os01g0101800 Oryza sativa ssp. japonica HOM05D007138 ORTHO05D009148 7.3e-17 93.2 593 24.8
Oeu056444.1 Olea europaea HOM05D007138 ORTHO05D009148 9.6e-17 92.8 311 28.3
BcaB06g26535 Brassica carinata HOM05D007138 ORTHO05D009148 1.4e-15 89.0 76 65.8
CDE09G0581 Ceratophyllum demersum HOM05D007138 ORTHO05D009148 3.1e-15 87.8 389 28.3
Atru.chr3.1785 Acer truncatum HOM05D007138 ORTHO05D009148 2.7e-11 74.7 184 34.2
Nn1g02395 Nelumbo nucifera HOM05D007138 ORTHO05D009148 1.1e-09 69.3 38 78.9
ATR0561G013 Amborella trichopoda HOM05D007138 ORTHO05D009148 2.4e-07 61.6 113 32.7


User provided reference genes

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